CX296351

Overview
NameCX296351
Unique NameCX296351
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length385
Libraries
Library NameType
FerrChloL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CX296351 vs. ExPASy Swiss-Prot
Match: GCSP_BURMS (Glycine dehydrogenase [decarboxylating] OS=Burkholderia mallei (strain SAVP1) GN=gcvP PE=3 SV=1)

HSP 1 Score: 134.42 bits (337), Expect = 1.721e-31
Identity = 63/98 (64.29%), Postives = 81/98 (82.65%), Query Frame = 1 
Query:   61 LGTIAAAPWGSALILPISYTYIAMMGSKGLTEASKIAILNANYMAKRLEKHYPILFRGVNGTVAHEFIVDLRGLKNTAGIEPEDVAQRLMDYGFHGPT 354
            +G ++AAP+GSA ILPIS+ YIAMMG+K LT A++ AILNANY+AKRL  HYP+L+ G  G VAHE I+DLR +K+++GI  +DVA+RLMDYGFH PT
Sbjct:  764 IGAVSAAPYGSASILPISWMYIAMMGAKNLTAATETAILNANYIAKRLAPHYPVLYSGPGGLVAHECILDLRPIKDSSGITVDDVAKRLMDYGFHAPT 861
[Close]
BLAST of CX296351 vs. ExPASy Swiss-Prot
Match: GCSP_BURMA (Glycine dehydrogenase [decarboxylating] OS=Burkholderia mallei GN=gcvP PE=3 SV=1)

HSP 1 Score: 134.42 bits (337), Expect = 1.721e-31
Identity = 63/98 (64.29%), Postives = 81/98 (82.65%), Query Frame = 1 
Query:   61 LGTIAAAPWGSALILPISYTYIAMMGSKGLTEASKIAILNANYMAKRLEKHYPILFRGVNGTVAHEFIVDLRGLKNTAGIEPEDVAQRLMDYGFHGPT 354
            +G ++AAP+GSA ILPIS+ YIAMMG+K LT A++ AILNANY+AKRL  HYP+L+ G  G VAHE I+DLR +K+++GI  +DVA+RLMDYGFH PT
Sbjct:  764 IGAVSAAPYGSASILPISWMYIAMMGAKNLTAATETAILNANYIAKRLAPHYPVLYSGPGGLVAHECILDLRPIKDSSGITVDDVAKRLMDYGFHAPT 861
[Close]
BLAST of CX296351 vs. ExPASy Swiss-Prot
Match: GCSP_BURM9 (Glycine dehydrogenase [decarboxylating] OS=Burkholderia mallei (strain NCTC 10229) GN=gcvP PE=3 SV=1)

HSP 1 Score: 134.42 bits (337), Expect = 1.721e-31
Identity = 63/98 (64.29%), Postives = 81/98 (82.65%), Query Frame = 1 
Query:   61 LGTIAAAPWGSALILPISYTYIAMMGSKGLTEASKIAILNANYMAKRLEKHYPILFRGVNGTVAHEFIVDLRGLKNTAGIEPEDVAQRLMDYGFHGPT 354
            +G ++AAP+GSA ILPIS+ YIAMMG+K LT A++ AILNANY+AKRL  HYP+L+ G  G VAHE I+DLR +K+++GI  +DVA+RLMDYGFH PT
Sbjct:  764 IGAVSAAPYGSASILPISWMYIAMMGAKNLTAATETAILNANYIAKRLAPHYPVLYSGPGGLVAHECILDLRPIKDSSGITVDDVAKRLMDYGFHAPT 861
[Close]
BLAST of CX296351 vs. ExPASy Swiss-Prot
Match: GCSP_BURM7 (Glycine dehydrogenase [decarboxylating] OS=Burkholderia mallei (strain NCTC 10247) GN=gcvP PE=3 SV=1)

HSP 1 Score: 134.42 bits (337), Expect = 1.721e-31
Identity = 63/98 (64.29%), Postives = 81/98 (82.65%), Query Frame = 1 
Query:   61 LGTIAAAPWGSALILPISYTYIAMMGSKGLTEASKIAILNANYMAKRLEKHYPILFRGVNGTVAHEFIVDLRGLKNTAGIEPEDVAQRLMDYGFHGPT 354
            +G ++AAP+GSA ILPIS+ YIAMMG+K LT A++ AILNANY+AKRL  HYP+L+ G  G VAHE I+DLR +K+++GI  +DVA+RLMDYGFH PT
Sbjct:  764 IGAVSAAPYGSASILPISWMYIAMMGAKNLTAATETAILNANYIAKRLAPHYPVLYSGPGGLVAHECILDLRPIKDSSGITVDDVAKRLMDYGFHAPT 861
[Close]
BLAST of CX296351 vs. ExPASy Swiss-Prot
Match: GCSP_BURCC (Glycine dehydrogenase [decarboxylating] OS=Burkholderia cenocepacia (strain MC0-3) GN=gcvP PE=3 SV=1)

HSP 1 Score: 134.42 bits (337), Expect = 1.721e-31
Identity = 63/98 (64.29%), Postives = 80/98 (81.63%), Query Frame = 1 
Query:   61 LGTIAAAPWGSALILPISYTYIAMMGSKGLTEASKIAILNANYMAKRLEKHYPILFRGVNGTVAHEFIVDLRGLKNTAGIEPEDVAQRLMDYGFHGPT 354
            +G ++AAP+GSA ILPIS+ YIAMMG+K LT A++ AILNANY+AKRL  HYP+L+ G  G VAHE I+DLR +K ++GI  +DVA+RLMDYGFH PT
Sbjct:  764 IGAVSAAPYGSASILPISWMYIAMMGAKNLTAATETAILNANYIAKRLAPHYPVLYSGPGGLVAHECILDLRPIKESSGISVDDVAKRLMDYGFHAPT 861
[Close]
BLAST of CX296351 vs. ExPASy Swiss-Prot
Match: GCSP_BORPE (Glycine dehydrogenase [decarboxylating] OS=Bordetella pertussis GN=gcvP PE=3 SV=1)

HSP 1 Score: 134.42 bits (337), Expect = 1.721e-31
Identity = 62/98 (63.27%), Postives = 80/98 (81.63%), Query Frame = 1 
Query:   61 LGTIAAAPWGSALILPISYTYIAMMGSKGLTEASKIAILNANYMAKRLEKHYPILFRGVNGTVAHEFIVDLRGLKNTAGIEPEDVAQRLMDYGFHGPT 354
            +G ++AAP+GSA ILPI Y YIA+MG++GL  A+++AILNANY+A RL  HYP+L+ G NG VAHE I+D+R LK T+GI  ED+A+RLMDYGFH PT
Sbjct:  743 VGPVSAAPYGSAGILPIPYVYIALMGAEGLRRATEVAILNANYIATRLRGHYPVLYAGRNGRVAHECILDVRPLKETSGISAEDIAKRLMDYGFHAPT 840
[Close]
BLAST of CX296351 vs. ExPASy Swiss-Prot
Match: GCSP_AZOSE (Glycine dehydrogenase [decarboxylating] OS=Azoarcus sp. (strain EbN1) GN=gcvP PE=3 SV=1)

HSP 1 Score: 134.42 bits (337), Expect = 1.721e-31
Identity = 66/118 (55.93%), Postives = 84/118 (71.19%), Query Frame = 1 
Query:    1 LPSHPVVSTGGIPAPEKSQPLGTIAAAPWGSALILPISYTYIAMMGSKGLTEASKIAILNANYMAKRLEKHYPILFRGVNGTVAHEFIVDLRGLKNTAGIEPEDVAQRLMDYGFHGPT 354
            +  H V +TG    P K Q  G ++AAP+GSA ILPIS+ YIAMMG  GL  A+++AILNANY+A RL +HYP+L+ G  G VAHE I+D+R +K   GI   D+A+RLMDYGFH PT
Sbjct:  739 MADHVVAATGDETRPNKGQ--GAVSAAPFGSASILPISWMYIAMMGDTGLKLATEVAILNANYVANRLAEHYPVLYTGSQGRVAHECILDIRPIKANTGISEVDIAKRLMDYGFHAPT 854
[Close]
BLAST of CX296351 vs. ExPASy Swiss-Prot
Match: GCSP1_COLP3 (Glycine dehydrogenase [decarboxylating] 1 OS=Colwellia psychrerythraea (strain 34H / ATCC BAA-681) GN=gcvP1 PE=3 SV=1)

HSP 1 Score: 134.42 bits (337), Expect = 1.721e-31
Identity = 64/118 (54.24%), Postives = 89/118 (75.42%), Query Frame = 1 
Query:    1 LPSHPVVSTGGIPAPEKSQPLGTIAAAPWGSALILPISYTYIAMMGSKGLTEASKIAILNANYMAKRLEKHYPILFRGVNGTVAHEFIVDLRGLKNTAGIEPEDVAQRLMDYGFHGPT 354
            LP H +++       E ++  G +++AP+GSA ILPI+Y YIA++G KG+T+A+K AI NANY++K+L +HYPIL+ G NG VAHE IVDLR LK ++G+   D+A+RLMDYGFH PT
Sbjct:  739 LPDHALINVD-----EATKGNGAVSSAPFGSASILPITYLYIALLGKKGVTDATKYAITNANYVSKKLSEHYPILYSGKNGRVAHECIVDLRPLKASSGVTEVDMAKRLMDYGFHSPT 851
[Close]
BLAST of CX296351 vs. ExPASy Swiss-Prot
Match: GCSP_BURM1 (Glycine dehydrogenase [decarboxylating] OS=Burkholderia multivorans (strain ATCC 17616 / 249) GN=gcvP PE=3 SV=1)

HSP 1 Score: 134.035 bits (336), Expect = 2.248e-31
Identity = 63/98 (64.29%), Postives = 80/98 (81.63%), Query Frame = 1 
Query:   61 LGTIAAAPWGSALILPISYTYIAMMGSKGLTEASKIAILNANYMAKRLEKHYPILFRGVNGTVAHEFIVDLRGLKNTAGIEPEDVAQRLMDYGFHGPT 354
            +G ++AAP+GSA ILPIS+ YIAMMG+K LT A++ AILNANY+AKRL  HYP+L+ G  G VAHE I+DLR +K ++GI  +DVA+RLMDYGFH PT
Sbjct:  764 IGAVSAAPYGSASILPISWMYIAMMGAKNLTAATETAILNANYIAKRLAPHYPVLYSGPGGLVAHECILDLRPIKESSGITVDDVAKRLMDYGFHAPT 861
[Close]
BLAST of CX296351 vs. ExPASy Swiss-Prot
Match: GCSP_BORPD (Glycine dehydrogenase [decarboxylating] OS=Bordetella petrii (strain ATCC BAA-461 / DSM 12804 / CCUG 43448) GN=gcvP PE=3 SV=1)

HSP 1 Score: 134.035 bits (336), Expect = 2.248e-31
Identity = 62/98 (63.27%), Postives = 81/98 (82.65%), Query Frame = 1 
Query:   61 LGTIAAAPWGSALILPISYTYIAMMGSKGLTEASKIAILNANYMAKRLEKHYPILFRGVNGTVAHEFIVDLRGLKNTAGIEPEDVAQRLMDYGFHGPT 354
            +G +AAAP+GSA ILPISY YIA+MG+ GL  A+++AILNANY+A RL  +YP+L+ G NG VAHE I+D+R LK+++GI  ED+A+RLMDYGFH PT
Sbjct:  746 IGPVAAAPYGSAGILPISYAYIALMGADGLRRATEVAILNANYVAARLRDYYPVLYAGRNGRVAHECILDVRPLKDSSGISAEDIAKRLMDYGFHAPT 843
The following BLAST results are available for this feature:
BLAST of CX296351 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 309
Match NameE-valueIdentityDescription
GCSP_BURMS1.721e-3164.29Glycine dehydrogenase [decarboxylating] OS=Burkhol... [more]
GCSP_BURMA1.721e-3164.29Glycine dehydrogenase [decarboxylating] OS=Burkhol... [more]
GCSP_BURM91.721e-3164.29Glycine dehydrogenase [decarboxylating] OS=Burkhol... [more]
GCSP_BURM71.721e-3164.29Glycine dehydrogenase [decarboxylating] OS=Burkhol... [more]
GCSP_BURCC1.721e-3164.29Glycine dehydrogenase [decarboxylating] OS=Burkhol... [more]
GCSP_BORPE1.721e-3163.27Glycine dehydrogenase [decarboxylating] OS=Bordete... [more]
GCSP_AZOSE1.721e-3155.93Glycine dehydrogenase [decarboxylating] OS=Azoarcu... [more]
GCSP1_COLP31.721e-3154.24Glycine dehydrogenase [decarboxylating] 1 OS=Colwe... [more]
GCSP_BURM12.248e-3164.29Glycine dehydrogenase [decarboxylating] OS=Burkhol... [more]
GCSP_BORPD2.248e-3163.27Glycine dehydrogenase [decarboxylating] OS=Bordete... [more]

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Properties
Property NameValue
Genbank descriptionC05139D09SK FerrChloL1 Citrus clementina cDNA clone C05139D09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX296351 ID=CX296351; Name=CX296351; organism=Citrus clementina; type=EST; length=385bp
CTGCCTTCACATCCTGTGGTATCCACAGGTGGTATTCCTGCCCCTGAAAA
GTCTCAACCCCTGGGCACAATTGCAGCTGCACCCTGGGGCTCTGCACTTA
TCCTGCCAATATCATATACGTACATAGCTATGATGGGTTCTAAAGGACTC
ACTGAGGCTTCAAAGATAGCTATTCTGAATGCAAACTACATGGCAAAACG
TTTGGAGAAACATTACCCCATCCTTTTCCGTGGTGTCAATGGAACAGTTG
CTCATGAATTCATTGTGGACTTAAGAGGCTTGAAGAATACTGCCGGGATA
GAGCCCGAAGATGTTGCCCAACGTCTTATGGATTATGGATTCCATGGACC
CACATGTCATGGCCTGTTCAGGCACACTTATGATT
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