CX296368

Overview
NameCX296368
Unique NameCX296368
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length582
Libraries
Library NameType
FerrChloL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10576 contig Ccv1_Contig10576:437..1018. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX296368 vs. ExPASy Swiss-Prot
Match: NAC55_ARATH (NAC domain-containing protein 55 OS=Arabidopsis thaliana GN=NAC055 PE=2 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 2.525e-14
Identity = 38/64 (59.38%), Postives = 47/64 (73.44%), Query Frame = 3
Query:    9 KTLGIKKALVFYAGKAPKGIKTNWIMHEYRPANVHRSPATKN-NLRLDDWVLCRLYNKKGRMEK 197
            + +GIKKALVFY GKAPKG KTNWIMHEYR       P+ +N + +LDDWVLCR+Y K+   +K
Sbjct:  109 RRVGIKKALVFYIGKAPKGTKTNWIMHEYRLI----EPSRRNGSTKLDDWVLCRIYKKQTSAQK 168          
BLAST of CX296368 vs. ExPASy Swiss-Prot
Match: NAC77_ORYSJ (NAC domain-containing protein 77 OS=Oryza sativa subsp. japonica GN=NAC77 PE=2 SV=2)

HSP 1 Score: 69.707 bits (169), Expect = 1.173e-11
Identity = 34/64 (53.12%), Postives = 47/64 (73.44%), Query Frame = 3
Query:    3 KPKTLGIKKALVFYAGKAPKGIKTNWIMHEYR-PANVHRSPATKNNLRL---DDWVLCRLYNKK 182
            K + +G+KK LVFY G+APKG KTNW+MHE+R  AN+H       NLRL   D+WV+C++++KK
Sbjct:  128 KKQLVGMKKTLVFYMGRAPKGTKTNWVMHEFRLHANLHNH---HPNLRLNPKDEWVVCKVFHKK 188          
BLAST of CX296368 vs. ExPASy Swiss-Prot
Match: NAC31_ARATH (Protein CUP-SHAPED COTYLEDON 3 OS=Arabidopsis thaliana GN=NAC031 PE=2 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 2.000e-11
Identity = 32/71 (45.07%), Postives = 46/71 (64.79%), Query Frame = 3
Query:   15 LGIKKALVFYAGKAPKGIKTNWIMHEYRPANVHRSPATKNNLRLDDWVLCRLYNKKGRMEKHYPSDQKSIG 227
            +G+KK LVFY G+AP+G+KT W+MHEYR  N H    T      ++WV+CR++NK G        D+K++G
Sbjct:  121 VGMKKTLVFYKGRAPRGLKTKWVMHEYRLENDHSHRHTCK----EEWVICRVFNKTG--------DRKNVG 179          
BLAST of CX296368 vs. ExPASy Swiss-Prot
Match: NAC22_ARATH (NAC domain-containing protein 21/22 OS=Arabidopsis thaliana GN=NAC021 PE=1 SV=2)

HSP 1 Score: 67.781 bits (164), Expect = 4.456e-11
Identity = 28/59 (47.46%), Postives = 41/59 (69.49%), Query Frame = 3
Query:    3 KPKTLGIKKALVFYAGKAPKGIKTNWIMHEYRPANVHRSPATKNNLRLDDWVLCRLYNK 179
            K K +G++K LVFY G+AP+G KT+W+MHE+R    H  P    +   +DWVLCR+++K
Sbjct:  113 KGKLVGMRKTLVFYQGRAPRGRKTDWVMHEFRLQGSHHPPNHSLSSPKEDWVLCRVFHK 171          
The following BLAST results are available for this feature:
BLAST of CX296368 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 14
Match NameE-valueIdentityDescription
NAC55_ARATH2.525e-1459.38NAC domain-containing protein 55 OS=Arabidopsis th... [more]
NAC77_ORYSJ1.173e-1153.13NAC domain-containing protein 77 OS=Oryza sativa s... [more]
NAC31_ARATH2.000e-1145.07Protein CUP-SHAPED COTYLEDON 3 OS=Arabidopsis thal... [more]
NAC22_ARATH4.456e-1147.46NAC domain-containing protein 21/22 OS=Arabidopsis... [more]

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Properties
Property NameValue
Genbank descriptionC05139G01SK FerrChloL1 Citrus clementina cDNA clone C05139G01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX296368 ID=CX296368; Name=CX296368; organism=Citrus clementina; type=EST; length=582bp
GGAAGCCGAAGACTCTTGGTATAAAAAAGGCGCTTGTGTTCTACGCTGGA
AAAGCGCCTAAAGGAATCAAAACTAATTGGATTATGCATGAATATCGCCC
TGCTAATGTTCACAGATCCCCCGCCACCAAAAACAACCTAAGGCTTGACG
ATTGGGTATTATGTCGATTGTACAACAAGAAGGGGAGGATGGAAAAACAT
TACCCCAGCGATCAAAAATCAATTGGATTCCCAGAACTGGAGGAGGATCG
GAAACCAAATATTAACATTTCACGTCAAGAGGTAGCATTAGGAATGCCTC
CACATCAGGGATCGCCTGCGCCAATGATGAATGACCTATTACATATGGAT
ACGTCGGACTCGGTGCCCCGGTTGCAGACGGATTCGAGTTGCTCCGAGCA
CGTGTTGTCGCCGGAGATCACGTGCGATAAGGAGGTCCAAAGTATGCCCA
AATGGAATGATCTAGGCAATGCCTTGAATGATGATTATAATCAGTTCAAT
TTCAACTACATGGACACTAATAGCTTCCAAGACGACCCTTTTGGCCCCGC
AGTTCAGTATCAGATGGATCAGTTATCACCCT
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