CX296373

Overview
NameCX296373
Unique NameCX296373
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length549
Libraries
Library NameType
FerrChloL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX296373 vs. ExPASy Swiss-Prot
Match: RL17_MOUSE (60S ribosomal protein L17 OS=Mus musculus GN=Rpl17 PE=2 SV=3)

HSP 1 Score: 149.828 bits (377), Expect = 7.862e-36
Identity = 74/107 (69.16%), Postives = 86/107 (80.37%), Query Frame = -2
Query:  228 RYLEDVMAHKQAIPFTRFCRGVGRTAQAKNRNPNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDALYISHIQVNQAQKQRRRTYRAHGRINPYMSSPCHIELTLS 548
            +YL+DV   KQ +PF R+  GVGR AQAK      QGRWP KSA+F+L +LKNAESNAE+KGLDVD+L I HIQVN+A K RRRTYRAHGRINPYMSSPCHIE+ L+
Sbjct:   46 KYLKDVTLKKQCVPFRRYNGGVGRCAQAKQWGWT-QGRWPKKSAEFLLHMLKNAESNAELKGLDVDSLVIEHIQVNKAPKMRRRTYRAHGRINPYMSSPCHIEMILT 151          
BLAST of CX296373 vs. ExPASy Swiss-Prot
Match: RL17_BOVIN (60S ribosomal protein L17 OS=Bos taurus GN=RPL17 PE=2 SV=3)

HSP 1 Score: 149.828 bits (377), Expect = 7.862e-36
Identity = 74/107 (69.16%), Postives = 86/107 (80.37%), Query Frame = -2
Query:  228 RYLEDVMAHKQAIPFTRFCRGVGRTAQAKNRNPNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDALYISHIQVNQAQKQRRRTYRAHGRINPYMSSPCHIELTLS 548
            +YL+DV   KQ +PF R+  GVGR AQAK      QGRWP KSA+F+L +LKNAESNAE+KGLDVD+L I HIQVN+A K RRRTYRAHGRINPYMSSPCHIE+ L+
Sbjct:   46 KYLKDVTLKKQCVPFRRYNGGVGRCAQAKQWGWT-QGRWPKKSAEFLLHMLKNAESNAELKGLDVDSLVIEHIQVNKAPKMRRRTYRAHGRINPYMSSPCHIEMILT 151          
BLAST of CX296373 vs. ExPASy Swiss-Prot
Match: RL17_PECGU (60S ribosomal protein L17 OS=Pectinaria gouldii GN=rpl-17 PE=2 SV=1)

HSP 1 Score: 149.058 bits (375), Expect = 1.341e-35
Identity = 73/105 (69.52%), Postives = 84/105 (80.00%), Query Frame = -2
Query:  231 YLEDVMAHKQAIPFTRFCRGVGRTAQAKNRNPNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDALYISHIQVNQAQKQRRRTYRAHGRINPYMSSPCHIELTL 545
            YL +V+ HKQ IPF R   GVGR AQAKN N   QGRWP KS +F+L LLKNAESNAE++GLDVD+L ++H+ V+ A K RRRTYRAHGRINPYMSSPCHIEL L
Sbjct:   47 YLSNVVEHKQCIPFRRHKGGVGRCAQAKNFNTT-QGRWPKKSCEFMLQLLKNAESNAELRGLDVDSLVVAHVSVDAAAKMRRRTYRAHGRINPYMSSPCHIELCL 150          
BLAST of CX296373 vs. ExPASy Swiss-Prot
Match: RL17_CAEEL (60S ribosomal protein L17 OS=Caenorhabditis elegans GN=rpl-17 PE=2 SV=1)

HSP 1 Score: 147.132 bits (370), Expect = 5.096e-35
Identity = 73/106 (68.87%), Postives = 81/106 (76.42%), Query Frame = -2
Query:  228 YLEDVMAHKQAIPFTRFCRGVGRTAQAKNRNPNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDALYISHIQVNQAQKQRRRTYRAHGRINPYMSSPCHIELTLS 545
            +L  V  HK+ +PF RF  G+GR AQ K  N   QGRWPVKSA F+LDLLKNAESNAE KGLDVD L I HI V +A K RRRTYRAHGRINPYMSSPCHIE+ L+
Sbjct:   49 FLNHVKEHKEIVPFRRFHGGIGRAAQTKQWNTT-QGRWPVKSADFLLDLLKNAESNAEYKGLDVDHLVIEHINVQRAAKLRRRTYRAHGRINPYMSSPCHIEVILA 153          
BLAST of CX296373 vs. ExPASy Swiss-Prot
Match: RL17_IXOSC (60S ribosomal protein L17 OS=Ixodes scapularis GN=RpL17 PE=2 SV=1)

HSP 1 Score: 146.747 bits (369), Expect = 6.655e-35
Identity = 74/107 (69.16%), Postives = 85/107 (79.44%), Query Frame = -2
Query:  228 RYLEDVMAHKQAIPFTRFCRGVGRTAQAKNRNPNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDALYISHIQVNQAQKQRRRTYRAHGRINPYMSSPCHIELTLS 548
            RYL++V+A K+ +PF RF  GVGR AQAK      QGRWP KSA+F+  LL+NAESNA+ KGLDVD L I HIQVN+A K RRRTYRAHGRINPYMSSPCHIE+ LS
Sbjct:   46 RYLKNVIAKKEIVPFRRFNGGVGRKAQAKAFGCT-QGRWPKKSAEFLWQLLRNAESNADYKGLDVDRLVIDHIQVNRAPKMRRRTYRAHGRINPYMSSPCHIEVILS 151          
BLAST of CX296373 vs. ExPASy Swiss-Prot
Match: RL17_ARGMO (60S ribosomal protein L17 OS=Argas monolakensis GN=RpL17 PE=2 SV=1)

HSP 1 Score: 146.362 bits (368), Expect = 8.692e-35
Identity = 73/107 (68.22%), Postives = 85/107 (79.44%), Query Frame = -2
Query:  228 RYLEDVMAHKQAIPFTRFCRGVGRTAQAKNRNPNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDALYISHIQVNQAQKQRRRTYRAHGRINPYMSSPCHIELTLS 548
            RYL++V+A K+ +PF RF  GVGR AQAK      QGRWP KSA+F+  LL+NAESNA+ KGLDVD L I HIQVN+A K RRRTYRAHGRINPYMSSPCH+E+ LS
Sbjct:   46 RYLKNVIAKKEIVPFRRFNGGVGRKAQAKAWGCT-QGRWPKKSAEFLWQLLRNAESNADYKGLDVDRLVIDHIQVNRAPKMRRRTYRAHGRINPYMSSPCHVEVILS 151          
BLAST of CX296373 vs. ExPASy Swiss-Prot
Match: RL17_LONON (60S ribosomal protein L17 OS=Lonomia obliqua GN=RpL17 PE=2 SV=1)

HSP 1 Score: 143.28 bits (360), Expect = 7.358e-34
Identity = 74/107 (69.16%), Postives = 82/107 (76.64%), Query Frame = -2
Query:  228 RYLEDVMAHKQAIPFTRFCRGVGRTAQAKNRNPNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDALYISHIQVNQAQKQRRRTYRAHGRINPYMSSPCHIELTLS 548
            RYL++V   K+ IPF RF  GVGR AQAK      QGRWP KSA+F L LL+NAESNA+ KGLDVD L I HIQVN+A   RRRTYRAHGRINPYMSSPCHIE+ LS
Sbjct:   46 RYLKNVTEKKECIPFRRFNGGVGRCAQAKQFGTT-QGRWPKKSAEFPLQLLRNAESNADYKGLDVDRLVIDHIQVNRAPCLRRRTYRAHGRINPYMSSPCHIEVALS 151          
BLAST of CX296373 vs. ExPASy Swiss-Prot
Match: RL17_AGRLI (60S ribosomal protein L17 OS=Agriotes lineatus GN=RpL17 PE=2 SV=1)

HSP 1 Score: 143.28 bits (360), Expect = 7.358e-34
Identity = 70/106 (66.04%), Postives = 83/106 (78.30%), Query Frame = -2
Query:  228 YLEDVMAHKQAIPFTRFCRGVGRTAQAKNRNPNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDALYISHIQVNQAQKQRRRTYRAHGRINPYMSSPCHIELTLS 545
            YL++V+ HK+ +PF RF  GVGR AQAK      QGRWP KSA+F+L +L+NAESNA+  GLDVD L I HIQVN+A   RRRTYRAHGRINPYMSSPCHIE+ L+
Sbjct:   47 YLKNVIGHKECVPFRRFNGGVGRCAQAKQWGTT-QGRWPKKSAEFLLQMLRNAESNADYSGLDVDRLVIEHIQVNRAACLRRRTYRAHGRINPYMSSPCHIEMWLT 151          
BLAST of CX296373 vs. ExPASy Swiss-Prot
Match: RL17_ANOGA (60S ribosomal protein L17 OS=Anopheles gambiae GN=RpL17 PE=3 SV=1)

HSP 1 Score: 142.895 bits (359), Expect = 9.610e-34
Identity = 71/107 (66.36%), Postives = 87/107 (81.31%), Query Frame = -2
Query:  228 RYLEDVMAHKQAIPFTRFCRGVGRTAQAKNRNPNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDALYISHIQVNQAQKQRRRTYRAHGRINPYMSSPCHIELTLS 548
            R+L++V+  K+ +PF RF  GVGR AQAK+   +  GRWP KSA+F+L LLKNAE+NA+ KGLDVD L I+HIQVN+A   RRRTYRAHGRINPYMSSPCHIEL+L+
Sbjct:   46 RFLKNVIEKKECVPFRRFNGGVGRCAQAKHWGTS-VGRWPKKSAEFLLQLLKNAEANADYKGLDVDRLVINHIQVNRAPCLRRRTYRAHGRINPYMSSPCHIELSLT 151          
BLAST of CX296373 vs. ExPASy Swiss-Prot
Match: RL17_PHLPP (60S ribosomal protein L17 OS=Phlebotomus papatasi GN=RpL17 PE=2 SV=1)

HSP 1 Score: 142.51 bits (358), Expect = 1.255e-33
Identity = 71/107 (66.36%), Postives = 84/107 (78.50%), Query Frame = -2
Query:  228 RYLEDVMAHKQAIPFTRFCRGVGRTAQAKNRNPNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDALYISHIQVNQAQKQRRRTYRAHGRINPYMSSPCHIELTLS 548
            R+L++V+  K+ +PF RF  GVGR AQAK      QGRWP KSA+F+L LL+NAESNA+ KGLDVD L I HIQVN+A   RRRTYRAHGRINPYMSSPCHIE+ L+
Sbjct:   46 RFLKNVVEKKECVPFRRFNGGVGRCAQAKQWKTT-QGRWPKKSAEFLLQLLRNAESNADYKGLDVDRLVIDHIQVNRAPCLRRRTYRAHGRINPYMSSPCHIEVILT 151          
The following BLAST results are available for this feature:
BLAST of CX296373 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 64
Match NameE-valueIdentityDescription
RL17_MOUSE7.862e-3669.1660S ribosomal protein L17 OS=Mus musculus GN=Rpl17... [more]
RL17_BOVIN7.862e-3669.1660S ribosomal protein L17 OS=Bos taurus GN=RPL17 P... [more]
RL17_PECGU1.341e-3569.5260S ribosomal protein L17 OS=Pectinaria gouldii GN... [more]
RL17_CAEEL5.096e-3568.8760S ribosomal protein L17 OS=Caenorhabditis elegan... [more]
RL17_IXOSC6.655e-3569.1660S ribosomal protein L17 OS=Ixodes scapularis GN=... [more]
RL17_ARGMO8.692e-3568.2260S ribosomal protein L17 OS=Argas monolakensis GN... [more]
RL17_LONON7.358e-3469.1660S ribosomal protein L17 OS=Lonomia obliqua GN=Rp... [more]
RL17_AGRLI7.358e-3466.0460S ribosomal protein L17 OS=Agriotes lineatus GN=... [more]
RL17_ANOGA9.610e-3466.3660S ribosomal protein L17 OS=Anopheles gambiae GN=... [more]
RL17_PHLPP1.255e-3366.3660S ribosomal protein L17 OS=Phlebotomus papatasi ... [more]

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Properties
Property NameValue
Genbank descriptionC05139G07SK FerrChloL1 Citrus clementina cDNA clone C05139G07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX296373 ID=CX296373; Name=CX296373; organism=Citrus clementina; type=EST; length=549bp
CGAGCCATGGCAAGACAGAATAAACTAAATACTGAACCAACAGAAGTCTT
CAGGAACAAGTATCTTGTAAACAAAATTGTATGTTGTCATGGTAGTACAA
AGGGGGAAAAAAGAGAAATCAAGTCAGGACTCCCAACATTCAAGATAAGG
CACCACTATGTAGCTGTCCTCGGTTTCCTGGAAGCCAACTGGGTCTCCGG
CTCTTTCTTCACAGGTTCCTCCTTTTCTGAGAGTGTCAACTCAATATGAC
ATGGGGAAGACATGTATGGGTTAATCCTTCCATGTGCACGATAAGTCCGA
CGCCTCTGCTTCTGGGCTTGATTCACTTGGATGTGAGAAATGTAAAGCGC
GTCCACATCTAAGCCTTTCACCTCTGCATTACTCTCAGCATTCTTGAGTA
AATCCAGAATGAACTTTGCAGATTTAACCGGCCAGCGACCTTGACCATTT
GGATTACGGTTTTTAGCCTGTGCAGTTCGCCCAACACCGCGACAGAAGCG
GGTGAATGGTATGGCTTGCTTGTGAGCCATAACATCCTCCAAGTACCTT
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