CX296373

Overview
NameCX296373
Unique NameCX296373
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length549
Libraries
Library NameType
FerrChloL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX296373 vs. ExPASy Swiss-Prot
Match: RL17_BIPLU (60S ribosomal protein L17 OS=Biphyllus lunatus GN=RpL17 PE=2 SV=1)

HSP 1 Score: 142.124 bits (357), Expect = 1.639e-33
Identity = 71/106 (66.98%), Postives = 82/106 (77.36%), Query Frame = -2
Query:  228 YLEDVMAHKQAIPFTRFCRGVGRTAQAKNRNPNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDALYISHIQVNQAQKQRRRTYRAHGRINPYMSSPCHIELTLS 545
            YL++V A K+ +PF RF  GVGR AQAK      QGRWP KSA+F+L LL+NAESNA+  GLDVD L + HIQVN+A   RRRTYRAHGRINPYMSSPCHIEL L+
Sbjct:   47 YLKNVTAQKECVPFRRFNGGVGRCAQAKQFGTT-QGRWPKKSAEFLLQLLRNAESNADYSGLDVDRLVVQHIQVNRAACLRRRTYRAHGRINPYMSSPCHIELWLT 151          
BLAST of CX296373 vs. ExPASy Swiss-Prot
Match: RL17_MACHI (60S ribosomal protein L17 OS=Maconellicoccus hirsutus GN=RpL17 PE=2 SV=1)

HSP 1 Score: 141.739 bits (356), Expect = 2.141e-33
Identity = 69/107 (64.49%), Postives = 85/107 (79.44%), Query Frame = -2
Query:  228 RYLEDVMAHKQAIPFTRFCRGVGRTAQAKNRNPNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDALYISHIQVNQAQKQRRRTYRAHGRINPYMSSPCHIELTLS 548
            ++L++V   ++ +PF RF  GVGR AQAK      QGRWP+KSA+F+L+LL+NAESNAE KGLD D L+I HIQVN+A   RRRTYRAHGRINPYMSSPCHIE+ L+
Sbjct:   46 QFLKNVQDKQECVPFRRFNGGVGRCAQAKQWGTT-QGRWPIKSAQFLLELLRNAESNAEFKGLDSDRLFIEHIQVNRAPCLRRRTYRAHGRINPYMSSPCHIEVILT 151          
BLAST of CX296373 vs. ExPASy Swiss-Prot
Match: RL17_BOMMO (60S ribosomal protein L17 OS=Bombyx mori GN=RpL17 PE=2 SV=1)

HSP 1 Score: 141.739 bits (356), Expect = 2.141e-33
Identity = 73/107 (68.22%), Postives = 83/107 (77.57%), Query Frame = -2
Query:  228 RYLEDVMAHKQAIPFTRFCRGVGRTAQAKNRNPNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDALYISHIQVNQAQKQRRRTYRAHGRINPYMSSPCHIELTLS 548
            RYL++V+  K+ IPF RF  GVGR AQAK      QGRWP KSA+F+L LL+NAESNA+ K LDVD L I HIQVN+A   RRRTYRAHGRINPYMSSPCHIE+ LS
Sbjct:   46 RYLKNVIEKKECIPFRRFNGGVGRCAQAKQFGTT-QGRWPKKSAEFLLQLLRNAESNADNKTLDVDRLVIDHIQVNRAPCLRRRTYRAHGRINPYMSSPCHIEVCLS 151          
BLAST of CX296373 vs. ExPASy Swiss-Prot
Match: RL17_DROYA (60S ribosomal protein L17 OS=Drosophila yakuba GN=RpL17 PE=2 SV=1)

HSP 1 Score: 141.354 bits (355), Expect = 2.796e-33
Identity = 69/107 (64.49%), Postives = 83/107 (77.57%), Query Frame = -2
Query:  228 RYLEDVMAHKQAIPFTRFCRGVGRTAQAKNRNPNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDALYISHIQVNQAQKQRRRTYRAHGRINPYMSSPCHIELTLS 548
            RYL+ V+  K+ +PF RF  GVGR AQAK      QGRWP KSA+F+L LL+NAE+NA+ KGLD D L + HIQVN+AQ  RRRTYRAHGRINPYMSSPCH+E+ L+
Sbjct:   46 RYLKAVIDQKECVPFRRFNGGVGRCAQAKQWKTT-QGRWPKKSAEFLLQLLRNAEANADCKGLDADRLVVHHIQVNRAQCLRRRTYRAHGRINPYMSSPCHVEVILT 151          
BLAST of CX296373 vs. ExPASy Swiss-Prot
Match: RL17_DROME (60S ribosomal protein L17 OS=Drosophila melanogaster GN=RpL17 PE=1 SV=1)

HSP 1 Score: 141.354 bits (355), Expect = 2.796e-33
Identity = 69/107 (64.49%), Postives = 83/107 (77.57%), Query Frame = -2
Query:  228 RYLEDVMAHKQAIPFTRFCRGVGRTAQAKNRNPNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDALYISHIQVNQAQKQRRRTYRAHGRINPYMSSPCHIELTLS 548
            RYL+ V+  K+ +PF RF  GVGR AQAK      QGRWP KSA+F+L LL+NAE+NA+ KGLD D L + HIQVN+AQ  RRRTYRAHGRINPYMSSPCH+E+ L+
Sbjct:   46 RYLKAVIDQKECVPFRRFNGGVGRCAQAKQWKTT-QGRWPKKSAEFLLQLLRNAEANADCKGLDADRLVVHHIQVNRAQCLRRRTYRAHGRINPYMSSPCHVEVILT 151          
BLAST of CX296373 vs. ExPASy Swiss-Prot
Match: RL17_AEDAL (60S ribosomal protein L17 OS=Aedes albopictus GN=RpL17 PE=2 SV=1)

HSP 1 Score: 141.354 bits (355), Expect = 2.796e-33
Identity = 69/107 (64.49%), Postives = 86/107 (80.37%), Query Frame = -2
Query:  228 RYLEDVMAHKQAIPFTRFCRGVGRTAQAKNRNPNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDALYISHIQVNQAQKQRRRTYRAHGRINPYMSSPCHIELTLS 548
            ++L++V   K+ +PF RF  GVGR AQAK+ N +  GRWP KSA+F+L LLKNAE+NA+ +GLDVD L + HIQVN+A   RRRTYRAHGRINPYMSSPCHIEL+L+
Sbjct:   46 KFLKNVCEKKECVPFRRFNGGVGRCAQAKHWNTS-VGRWPKKSAEFLLQLLKNAEANADYRGLDVDRLVVDHIQVNRAPCLRRRTYRAHGRINPYMSSPCHIELSLT 151          
BLAST of CX296373 vs. ExPASy Swiss-Prot
Match: RL17_AEDAE (60S ribosomal protein L17 OS=Aedes aegypti GN=RpL17 PE=2 SV=1)

HSP 1 Score: 141.354 bits (355), Expect = 2.796e-33
Identity = 69/107 (64.49%), Postives = 86/107 (80.37%), Query Frame = -2
Query:  228 RYLEDVMAHKQAIPFTRFCRGVGRTAQAKNRNPNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDALYISHIQVNQAQKQRRRTYRAHGRINPYMSSPCHIELTLS 548
            ++L++V   K+ +PF RF  GVGR AQAK+ N +  GRWP KSA+F+L LLKNAE+NA+ +GLDVD L + HIQVN+A   RRRTYRAHGRINPYMSSPCHIEL+L+
Sbjct:   46 KFLKNVCEKKECVPFRRFNGGVGRCAQAKHWNTS-VGRWPKKSAEFLLQLLKNAEANADYRGLDVDRLVVDHIQVNRAPCLRRRTYRAHGRINPYMSSPCHIELSLT 151          
BLAST of CX296373 vs. ExPASy Swiss-Prot
Match: RL17A_SCHPO (60S ribosomal protein L17-A OS=Schizosaccharomyces pombe GN=rpl17a PE=2 SV=1)

HSP 1 Score: 139.813 bits (351), Expect = 8.136e-33
Identity = 68/106 (64.15%), Postives = 80/106 (75.47%), Query Frame = -2
Query:  228 YLEDVMAHKQAIPFTRFCRGVGRTAQAKNRNPNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDALYISHIQVNQAQKQRRRTYRAHGRINPYMSSPCHIELTLS 545
            +L++V  HKQA+PF RF  GVGRTAQ K      Q RWPVKS KF  DLLKNAE+NAE KGLD+D L I H+QVN A KQRRRTYRAHGR+  Y+SSP HIE+ ++
Sbjct:   47 FLDNVKEHKQAVPFRRFNGGVGRTAQGKEFGVT-QARWPVKSVKFFYDLLKNAEANAEAKGLDMDKLIIKHVQVNAAPKQRRRTYRAHGRVTAYLSSPSHIEIIVA 151          
BLAST of CX296373 vs. ExPASy Swiss-Prot
Match: RL17_NEUCR (60S ribosomal protein L17 OS=Neurospora crassa GN=rpl-17 PE=3 SV=1)

HSP 1 Score: 139.043 bits (349), Expect = 1.388e-32
Identity = 66/107 (61.68%), Postives = 82/107 (76.64%), Query Frame = -2
Query:  228 RYLEDVMAHKQAIPFTRFCRGVGRTAQAKNRNPNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDALYISHIQVNQAQKQRRRTYRAHGRINPYMSSPCHIELTLS 548
            ++LE+V+  K+A+P  R+  G GR AQ K    + + RWP KSA+F+L LLKNAE+NA+ KGLD   L + HIQVNQA KQRRRTYRAHGRINPYMS+PCHIEL L+
Sbjct:   46 KFLENVLEKKEAVPMRRYAGGTGRAAQGKQFGVS-RARWPAKSAEFLLGLLKNAEANADAKGLDTGNLVVKHIQVNQAPKQRRRTYRAHGRINPYMSNPCHIELILT 151          
BLAST of CX296373 vs. ExPASy Swiss-Prot
Match: RL17_DROPS (60S ribosomal protein L17 OS=Drosophila pseudoobscura pseudoobscura GN=RpL17 PE=3 SV=1)

HSP 1 Score: 139.043 bits (349), Expect = 1.388e-32
Identity = 67/107 (62.62%), Postives = 83/107 (77.57%), Query Frame = -2
Query:  228 RYLEDVMAHKQAIPFTRFCRGVGRTAQAKNRNPNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDALYISHIQVNQAQKQRRRTYRAHGRINPYMSSPCHIELTLS 548
            R+L+ V+  K+ +PF RF  GVGR AQAK      QGRWP KSA+F+L LL+NAE+NA+ KGLD D + + HIQVN+AQ  RRRTYRAHGRINPYMSSPCH+E+ L+
Sbjct:   46 RFLKAVIDQKECVPFRRFNGGVGRCAQAKQWKTT-QGRWPKKSAEFLLQLLRNAEANADCKGLDADRMVVHHIQVNRAQCLRRRTYRAHGRINPYMSSPCHVEVILT 151          
The following BLAST results are available for this feature:
BLAST of CX296373 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 64
Match NameE-valueIdentityDescription
RL17_BIPLU1.639e-3366.9860S ribosomal protein L17 OS=Biphyllus lunatus GN=... [more]
RL17_MACHI2.141e-3364.4960S ribosomal protein L17 OS=Maconellicoccus hirsu... [more]
RL17_BOMMO2.141e-3368.2260S ribosomal protein L17 OS=Bombyx mori GN=RpL17 ... [more]
RL17_DROYA2.796e-3364.4960S ribosomal protein L17 OS=Drosophila yakuba GN=... [more]
RL17_DROME2.796e-3364.4960S ribosomal protein L17 OS=Drosophila melanogast... [more]
RL17_AEDAL2.796e-3364.4960S ribosomal protein L17 OS=Aedes albopictus GN=R... [more]
RL17_AEDAE2.796e-3364.4960S ribosomal protein L17 OS=Aedes aegypti GN=RpL1... [more]
RL17A_SCHPO8.136e-3364.1560S ribosomal protein L17-A OS=Schizosaccharomyces... [more]
RL17_NEUCR1.388e-3261.6860S ribosomal protein L17 OS=Neurospora crassa GN=... [more]
RL17_DROPS1.388e-3262.6260S ribosomal protein L17 OS=Drosophila pseudoobsc... [more]

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Properties
Property NameValue
Genbank descriptionC05139G07SK FerrChloL1 Citrus clementina cDNA clone C05139G07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX296373 ID=CX296373; Name=CX296373; organism=Citrus clementina; type=EST; length=549bp
CGAGCCATGGCAAGACAGAATAAACTAAATACTGAACCAACAGAAGTCTT
CAGGAACAAGTATCTTGTAAACAAAATTGTATGTTGTCATGGTAGTACAA
AGGGGGAAAAAAGAGAAATCAAGTCAGGACTCCCAACATTCAAGATAAGG
CACCACTATGTAGCTGTCCTCGGTTTCCTGGAAGCCAACTGGGTCTCCGG
CTCTTTCTTCACAGGTTCCTCCTTTTCTGAGAGTGTCAACTCAATATGAC
ATGGGGAAGACATGTATGGGTTAATCCTTCCATGTGCACGATAAGTCCGA
CGCCTCTGCTTCTGGGCTTGATTCACTTGGATGTGAGAAATGTAAAGCGC
GTCCACATCTAAGCCTTTCACCTCTGCATTACTCTCAGCATTCTTGAGTA
AATCCAGAATGAACTTTGCAGATTTAACCGGCCAGCGACCTTGACCATTT
GGATTACGGTTTTTAGCCTGTGCAGTTCGCCCAACACCGCGACAGAAGCG
GGTGAATGGTATGGCTTGCTTGTGAGCCATAACATCCTCCAAGTACCTT
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