CX296373
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CX296373 vs. ExPASy Swiss-Prot
Match: RL17_THEAN (60S ribosomal protein L17 OS=Theileria annulata GN=RPL17 PE=3 SV=1) HSP 1 Score: 130.183 bits (326), Expect = 6.446e-30 Identity = 64/104 (61.54%), Postives = 78/104 (75.00%), Query Frame = -2 Query: 237 RYLEDVMAHKQAIPFTRFCRGVGRTAQAKNRNPNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDALYISHIQVNQAQKQRRRTYRAHGRINPYMSSPCHIEL 548 RYL DV+ K+ +PF +F GVGR AQAK + QGRWP KS KF+LDLLKN ESNAEVKGL+ L + H+QVN+A RRR+YRAHGRI P++S PCH+EL Sbjct: 46 RYLNDVIDRKRCVPFRKFRGGVGRCAQAKAFK-HTQGRWPEKSCKFLLDLLKNLESNAEVKGLEQSKLRLEHVQVNRAPVGRRRSYRAHGRIIPFLSHPCHVEL 148
BLAST of CX296373 vs. ExPASy Swiss-Prot
Match: RL22_METMA (50S ribosomal protein L22P OS=Methanosarcina mazei GN=rpl22p PE=3 SV=1) HSP 1 Score: 80.4925 bits (197), Expect = 5.858e-15 Identity = 45/107 (42.06%), Postives = 63/107 (58.88%), Query Frame = -2 Query: 228 RYLEDVMAHKQAIPFTRFCRGVGRTAQAKNRNPNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDALYISHIQVNQAQKQRRRTYRAHGRINPYMSSPCHIELTLS 548 ++LEDV+A KQA+PF R G G + P GR+PV ++K IL +LKNAESNAE KGL+ +YI H + + + RA GR +P + +IE+ LS Sbjct: 47 KFLEDVIAMKQAVPFKRHSEGAGH-----RKGPMAGGRYPVSASKEILKVLKNAESNAEYKGLEPANMYIIHAAIQRGRVIHGFMPRARGRASPKDTETVNIEMILS 148
BLAST of CX296373 vs. ExPASy Swiss-Prot
Match: RL22_METBF (50S ribosomal protein L22P OS=Methanosarcina barkeri (strain Fusaro / DSM 804) GN=rpl22p PE=3 SV=1) HSP 1 Score: 80.1073 bits (196), Expect = 7.650e-15 Identity = 45/107 (42.06%), Postives = 64/107 (59.81%), Query Frame = -2 Query: 228 RYLEDVMAHKQAIPFTRFCRGVGRTAQAKNRNPNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDALYISHIQVNQAQKQRRRTYRAHGRINPYMSSPCHIELTLS 548 ++LEDV+A KQA+PF R G G + P GR+PV ++K IL +L+NAESNAE KGL+ +YI+H + + + R RA GR P + +IE+ LS Sbjct: 47 KFLEDVIALKQAVPFKRHHDGSGH-----RKGPMAAGRYPVSASKEILKILRNAESNAEYKGLEPANMYITHAAIQRGRVIRGFMPRARGRATPKDTETVNIEMILS 148
BLAST of CX296373 vs. ExPASy Swiss-Prot
Match: RL22_METBU (50S ribosomal protein L22P OS=Methanococcoides burtonii (strain DSM 6242) GN=rpl22p PE=3 SV=1) HSP 1 Score: 77.7962 bits (190), Expect = 3.797e-14 Identity = 43/107 (40.19%), Postives = 64/107 (59.81%), Query Frame = -2 Query: 228 RYLEDVMAHKQAIPFTRFCRGVGRTAQAKNRNPNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDALYISHIQVNQAQKQRRRTYRAHGRINPYMSSPCHIELTLS 548 +YLEDV+ KQA+PF R +G + P GR+PVK A +L LLKNAESNAE KGL+ + ++I+H +N+ + RA GR +P + ++E+ +S Sbjct: 47 QYLEDVVILKQAVPFGRHNDSLGH-----RKGPMAAGRYPVKVASEMLKLLKNAESNAEYKGLNPEHMFIAHTAMNRGRVIHGMRPRARGRASPENTETVNLEMIIS 148
BLAST of CX296373 vs. ExPASy Swiss-Prot
Match: RL22_METS3 (50S ribosomal protein L22P OS=Methanobrevibacter smithii (strain PS / ATCC 35061 / DSM 861) GN=rpl22p PE=3 SV=1) HSP 1 Score: 77.0258 bits (188), Expect = 6.476e-14 Identity = 42/105 (40.00%), Postives = 64/105 (60.95%), Query Frame = -2 Query: 231 YLEDVMAHKQAIPFTRFCRGVGRTAQAKNRNPNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDALYISHIQVNQAQKQRRRTYRAHGRINPYMSSPCHIELTL 545 YLEDV+ K+++PF R R VG K + GR+PVK+A+ +L +L+NAE+NAE KG+D + L+I HI ++ RA GR+ P+ + HI++ L Sbjct: 49 YLEDVIDMKKSVPFKRHNRQVGHR---KGQEGWAAGRYPVKAAEQVLKVLENAEANAEYKGMDTENLFIEHISSHRGVVLPGVIPRAFGRMTPFNTPTTHIQIVL 150
BLAST of CX296373 vs. ExPASy Swiss-Prot
Match: RL22_THEVO (50S ribosomal protein L22P OS=Thermoplasma volcanium GN=rpl22p PE=3 SV=1) HSP 1 Score: 76.2554 bits (186), Expect = 1.105e-13 Identity = 39/105 (37.14%), Postives = 63/105 (60.00%), Query Frame = -2 Query: 228 LEDVMAHKQAIPFTRFCRGVGRTAQAKNRNPNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDALYISHIQVNQAQKQRRRTYRAHGRINPYMSSPCHIELTLS 542 LEDV++ K AIP+ R+ V +R G GR+PVK+AK +DLL N E+NAE KG++ D+L I H+ N+ + ++ T +A+GR ++E+ ++ Sbjct: 46 LEDVVSKKYAIPYFRYLDSVS------HRPGKGPGRYPVKAAKVFIDLLSNVENNAEFKGMNTDSLIIKHVAANKGRMIKKYTPKAYGRAGANFKDLINLEVIVT 144
BLAST of CX296373 vs. ExPASy Swiss-Prot
Match: RL22_METJA (50S ribosomal protein L22P OS=Methanocaldococcus jannaschii GN=rpl22p PE=3 SV=1) HSP 1 Score: 75.485 bits (184), Expect = 1.884e-13 Identity = 42/106 (39.62%), Postives = 63/106 (59.43%), Query Frame = -2 Query: 231 RYLEDVMAHKQAIPFTRFCRGVGRTAQAKNRNPNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDALYISHIQVNQAQKQRRRTYRAHGRINPYMSSPCHIELTL 548 ++LEDV+A ++ + F R C+ VG K + GR+PVK+AK IL +L++A++NAE KGL+ + L I HI N+ +R RA GR P HI++ L Sbjct: 50 KFLEDVIAMRRPVLFRRHCKKVGHR---KGKLGWPAGRYPVKAAKAILKILQHAKANAEYKGLNTEKLRIKHISTNKGITIKRYMPRAFGRATPKFQETVHIQVIL 152
BLAST of CX296373 vs. ExPASy Swiss-Prot
Match: RL22_METAC (50S ribosomal protein L22P OS=Methanosarcina acetivorans GN=rpl22p PE=3 SV=1) HSP 1 Score: 75.485 bits (184), Expect = 1.884e-13 Identity = 42/107 (39.25%), Postives = 62/107 (57.94%), Query Frame = -2 Query: 228 RYLEDVMAHKQAIPFTRFCRGVGRTAQAKNRNPNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDALYISHIQVNQAQKQRRRTYRAHGRINPYMSSPCHIELTLS 548 ++LEDV+A KQA+PF + G G + P G++P+ ++K IL +LKNAESNAE KGL+ +YI H + + + RA GR P + +IE+ LS Sbjct: 47 KFLEDVIAMKQAVPFKKHHDGSGH-----RKGPMAAGKYPISASKEILKVLKNAESNAEYKGLEPANMYIIHAAIQRGRVIHGFMPRARGRATPKDTETVNIEMILS 148
BLAST of CX296373 vs. ExPASy Swiss-Prot
Match: RL22_PYRKO (50S ribosomal protein L22P OS=Pyrococcus kodakaraensis GN=rpl22p PE=3 SV=1) HSP 1 Score: 75.0998 bits (183), Expect = 2.461e-13 Identity = 44/106 (41.51%), Postives = 58/106 (54.72%), Query Frame = -2 Query: 231 RYLEDVMAHKQAIPFTRFCRGVGRTAQAKNRNPNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDALYISHIQVNQAQKQRRRTYRAHGRINPYMSSPCHIELTL 548 RYL+DV+A K+ +P RF G K G GR+PVK AK + +L NA++NAE KGLDVD L I H ++ R RA GR P+ HIE+ + Sbjct: 50 RYLDDVIAKKRPVPMKRFNDSQGH----KPGKGFGPGRYPVKVAKAVKKILLNAKNNAEQKGLDVDRLKIIHAAAHRGPVLRGYIPRAFGRATPFNEQTTHIEIVV 151
BLAST of CX296373 vs. ExPASy Swiss-Prot
Match: RL22_IGNH4 (50S ribosomal protein L22P OS=Ignicoccus hospitalis (strain KIN4/I / DSM 18386 / JCM 14125) GN=rpl22p PE=3 SV=1) HSP 1 Score: 73.1738 bits (178), Expect = 9.352e-13 Identity = 39/103 (37.86%), Postives = 59/103 (57.28%), Query Frame = -2 Query: 237 YLEDVMAHKQAIPFTRFCRGVGRTAQAKNRNPNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDALYISHIQVNQAQKQRRRTYRAHGRINPYMSSPCHIEL 545 YLE V+ ++ +P+ R+ V +++ GR+PVK+AK+ L LLKN E+NAE KGL+V+ L I HI ++ +R RA GR P H+E+ Sbjct: 51 YLERVIKMEEPVPYRRYHGKVAHKRGLADKHGIPMGRYPVKAAKYFLKLLKNVEANAEFKGLEVEKLKIVHIASHKGMTIKRWMPRAFGRATPEFERRTHLEV 153 The following BLAST results are available for this feature:
BLAST of CX296373 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 64
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Sequences
The
following sequences are available for this feature:
EST sequence >CX296373 ID=CX296373; Name=CX296373; organism=Citrus clementina; type=EST; length=549bpback to top |