CX296373

Overview
NameCX296373
Unique NameCX296373
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length549
Libraries
Library NameType
FerrChloL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX296373 vs. ExPASy Swiss-Prot
Match: RL17_THEAN (60S ribosomal protein L17 OS=Theileria annulata GN=RPL17 PE=3 SV=1)

HSP 1 Score: 130.183 bits (326), Expect = 6.446e-30
Identity = 64/104 (61.54%), Postives = 78/104 (75.00%), Query Frame = -2
Query:  237 RYLEDVMAHKQAIPFTRFCRGVGRTAQAKNRNPNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDALYISHIQVNQAQKQRRRTYRAHGRINPYMSSPCHIEL 548
            RYL DV+  K+ +PF +F  GVGR AQAK    + QGRWP KS KF+LDLLKN ESNAEVKGL+   L + H+QVN+A   RRR+YRAHGRI P++S PCH+EL
Sbjct:   46 RYLNDVIDRKRCVPFRKFRGGVGRCAQAKAFK-HTQGRWPEKSCKFLLDLLKNLESNAEVKGLEQSKLRLEHVQVNRAPVGRRRSYRAHGRIIPFLSHPCHVEL 148          
BLAST of CX296373 vs. ExPASy Swiss-Prot
Match: RL22_METMA (50S ribosomal protein L22P OS=Methanosarcina mazei GN=rpl22p PE=3 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 5.858e-15
Identity = 45/107 (42.06%), Postives = 63/107 (58.88%), Query Frame = -2
Query:  228 RYLEDVMAHKQAIPFTRFCRGVGRTAQAKNRNPNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDALYISHIQVNQAQKQRRRTYRAHGRINPYMSSPCHIELTLS 548
            ++LEDV+A KQA+PF R   G G       + P   GR+PV ++K IL +LKNAESNAE KGL+   +YI H  + + +       RA GR +P  +   +IE+ LS
Sbjct:   47 KFLEDVIAMKQAVPFKRHSEGAGH-----RKGPMAGGRYPVSASKEILKVLKNAESNAEYKGLEPANMYIIHAAIQRGRVIHGFMPRARGRASPKDTETVNIEMILS 148          
BLAST of CX296373 vs. ExPASy Swiss-Prot
Match: RL22_METBF (50S ribosomal protein L22P OS=Methanosarcina barkeri (strain Fusaro / DSM 804) GN=rpl22p PE=3 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 7.650e-15
Identity = 45/107 (42.06%), Postives = 64/107 (59.81%), Query Frame = -2
Query:  228 RYLEDVMAHKQAIPFTRFCRGVGRTAQAKNRNPNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDALYISHIQVNQAQKQRRRTYRAHGRINPYMSSPCHIELTLS 548
            ++LEDV+A KQA+PF R   G G       + P   GR+PV ++K IL +L+NAESNAE KGL+   +YI+H  + + +  R    RA GR  P  +   +IE+ LS
Sbjct:   47 KFLEDVIALKQAVPFKRHHDGSGH-----RKGPMAAGRYPVSASKEILKILRNAESNAEYKGLEPANMYITHAAIQRGRVIRGFMPRARGRATPKDTETVNIEMILS 148          
BLAST of CX296373 vs. ExPASy Swiss-Prot
Match: RL22_METBU (50S ribosomal protein L22P OS=Methanococcoides burtonii (strain DSM 6242) GN=rpl22p PE=3 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 3.797e-14
Identity = 43/107 (40.19%), Postives = 64/107 (59.81%), Query Frame = -2
Query:  228 RYLEDVMAHKQAIPFTRFCRGVGRTAQAKNRNPNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDALYISHIQVNQAQKQRRRTYRAHGRINPYMSSPCHIELTLS 548
            +YLEDV+  KQA+PF R    +G       + P   GR+PVK A  +L LLKNAESNAE KGL+ + ++I+H  +N+ +       RA GR +P  +   ++E+ +S
Sbjct:   47 QYLEDVVILKQAVPFGRHNDSLGH-----RKGPMAAGRYPVKVASEMLKLLKNAESNAEYKGLNPEHMFIAHTAMNRGRVIHGMRPRARGRASPENTETVNLEMIIS 148          
BLAST of CX296373 vs. ExPASy Swiss-Prot
Match: RL22_METS3 (50S ribosomal protein L22P OS=Methanobrevibacter smithii (strain PS / ATCC 35061 / DSM 861) GN=rpl22p PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 6.476e-14
Identity = 42/105 (40.00%), Postives = 64/105 (60.95%), Query Frame = -2
Query:  231 YLEDVMAHKQAIPFTRFCRGVGRTAQAKNRNPNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDALYISHIQVNQAQKQRRRTYRAHGRINPYMSSPCHIELTL 545
            YLEDV+  K+++PF R  R VG     K +     GR+PVK+A+ +L +L+NAE+NAE KG+D + L+I HI  ++         RA GR+ P+ +   HI++ L
Sbjct:   49 YLEDVIDMKKSVPFKRHNRQVGHR---KGQEGWAAGRYPVKAAEQVLKVLENAEANAEYKGMDTENLFIEHISSHRGVVLPGVIPRAFGRMTPFNTPTTHIQIVL 150          
BLAST of CX296373 vs. ExPASy Swiss-Prot
Match: RL22_THEVO (50S ribosomal protein L22P OS=Thermoplasma volcanium GN=rpl22p PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 1.105e-13
Identity = 39/105 (37.14%), Postives = 63/105 (60.00%), Query Frame = -2
Query:  228 LEDVMAHKQAIPFTRFCRGVGRTAQAKNRNPNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDALYISHIQVNQAQKQRRRTYRAHGRINPYMSSPCHIELTLS 542
            LEDV++ K AIP+ R+   V       +R   G GR+PVK+AK  +DLL N E+NAE KG++ D+L I H+  N+ +  ++ T +A+GR         ++E+ ++
Sbjct:   46 LEDVVSKKYAIPYFRYLDSVS------HRPGKGPGRYPVKAAKVFIDLLSNVENNAEFKGMNTDSLIIKHVAANKGRMIKKYTPKAYGRAGANFKDLINLEVIVT 144          
BLAST of CX296373 vs. ExPASy Swiss-Prot
Match: RL22_METJA (50S ribosomal protein L22P OS=Methanocaldococcus jannaschii GN=rpl22p PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 1.884e-13
Identity = 42/106 (39.62%), Postives = 63/106 (59.43%), Query Frame = -2
Query:  231 RYLEDVMAHKQAIPFTRFCRGVGRTAQAKNRNPNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDALYISHIQVNQAQKQRRRTYRAHGRINPYMSSPCHIELTL 548
            ++LEDV+A ++ + F R C+ VG     K +     GR+PVK+AK IL +L++A++NAE KGL+ + L I HI  N+    +R   RA GR  P      HI++ L
Sbjct:   50 KFLEDVIAMRRPVLFRRHCKKVGHR---KGKLGWPAGRYPVKAAKAILKILQHAKANAEYKGLNTEKLRIKHISTNKGITIKRYMPRAFGRATPKFQETVHIQVIL 152          
BLAST of CX296373 vs. ExPASy Swiss-Prot
Match: RL22_METAC (50S ribosomal protein L22P OS=Methanosarcina acetivorans GN=rpl22p PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 1.884e-13
Identity = 42/107 (39.25%), Postives = 62/107 (57.94%), Query Frame = -2
Query:  228 RYLEDVMAHKQAIPFTRFCRGVGRTAQAKNRNPNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDALYISHIQVNQAQKQRRRTYRAHGRINPYMSSPCHIELTLS 548
            ++LEDV+A KQA+PF +   G G       + P   G++P+ ++K IL +LKNAESNAE KGL+   +YI H  + + +       RA GR  P  +   +IE+ LS
Sbjct:   47 KFLEDVIAMKQAVPFKKHHDGSGH-----RKGPMAAGKYPISASKEILKVLKNAESNAEYKGLEPANMYIIHAAIQRGRVIHGFMPRARGRATPKDTETVNIEMILS 148          
BLAST of CX296373 vs. ExPASy Swiss-Prot
Match: RL22_PYRKO (50S ribosomal protein L22P OS=Pyrococcus kodakaraensis GN=rpl22p PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 2.461e-13
Identity = 44/106 (41.51%), Postives = 58/106 (54.72%), Query Frame = -2
Query:  231 RYLEDVMAHKQAIPFTRFCRGVGRTAQAKNRNPNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDALYISHIQVNQAQKQRRRTYRAHGRINPYMSSPCHIELTL 548
            RYL+DV+A K+ +P  RF    G     K     G GR+PVK AK +  +L NA++NAE KGLDVD L I H   ++    R    RA GR  P+     HIE+ +
Sbjct:   50 RYLDDVIAKKRPVPMKRFNDSQGH----KPGKGFGPGRYPVKVAKAVKKILLNAKNNAEQKGLDVDRLKIIHAAAHRGPVLRGYIPRAFGRATPFNEQTTHIEIVV 151          
BLAST of CX296373 vs. ExPASy Swiss-Prot
Match: RL22_IGNH4 (50S ribosomal protein L22P OS=Ignicoccus hospitalis (strain KIN4/I / DSM 18386 / JCM 14125) GN=rpl22p PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 9.352e-13
Identity = 39/103 (37.86%), Postives = 59/103 (57.28%), Query Frame = -2
Query:  237 YLEDVMAHKQAIPFTRFCRGVGRTAQAKNRNPNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDALYISHIQVNQAQKQRRRTYRAHGRINPYMSSPCHIEL 545
            YLE V+  ++ +P+ R+   V       +++    GR+PVK+AK+ L LLKN E+NAE KGL+V+ L I HI  ++    +R   RA GR  P      H+E+
Sbjct:   51 YLERVIKMEEPVPYRRYHGKVAHKRGLADKHGIPMGRYPVKAAKYFLKLLKNVEANAEFKGLEVEKLKIVHIASHKGMTIKRWMPRAFGRATPEFERRTHLEV 153          
The following BLAST results are available for this feature:
BLAST of CX296373 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 64
Match NameE-valueIdentityDescription
RL17_THEAN6.446e-3061.5460S ribosomal protein L17 OS=Theileria annulata GN... [more]
RL22_METMA5.858e-1542.0650S ribosomal protein L22P OS=Methanosarcina mazei... [more]
RL22_METBF7.650e-1542.0650S ribosomal protein L22P OS=Methanosarcina barke... [more]
RL22_METBU3.797e-1440.1950S ribosomal protein L22P OS=Methanococcoides bur... [more]
RL22_METS36.476e-1440.0050S ribosomal protein L22P OS=Methanobrevibacter s... [more]
RL22_THEVO1.105e-1337.1450S ribosomal protein L22P OS=Thermoplasma volcani... [more]
RL22_METJA1.884e-1339.6250S ribosomal protein L22P OS=Methanocaldococcus j... [more]
RL22_METAC1.884e-1339.2550S ribosomal protein L22P OS=Methanosarcina aceti... [more]
RL22_PYRKO2.461e-1341.5150S ribosomal protein L22P OS=Pyrococcus kodakarae... [more]
RL22_IGNH49.352e-1337.8650S ribosomal protein L22P OS=Ignicoccus hospitali... [more]

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Properties
Property NameValue
Genbank descriptionC05139G07SK FerrChloL1 Citrus clementina cDNA clone C05139G07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX296373 ID=CX296373; Name=CX296373; organism=Citrus clementina; type=EST; length=549bp
CGAGCCATGGCAAGACAGAATAAACTAAATACTGAACCAACAGAAGTCTT
CAGGAACAAGTATCTTGTAAACAAAATTGTATGTTGTCATGGTAGTACAA
AGGGGGAAAAAAGAGAAATCAAGTCAGGACTCCCAACATTCAAGATAAGG
CACCACTATGTAGCTGTCCTCGGTTTCCTGGAAGCCAACTGGGTCTCCGG
CTCTTTCTTCACAGGTTCCTCCTTTTCTGAGAGTGTCAACTCAATATGAC
ATGGGGAAGACATGTATGGGTTAATCCTTCCATGTGCACGATAAGTCCGA
CGCCTCTGCTTCTGGGCTTGATTCACTTGGATGTGAGAAATGTAAAGCGC
GTCCACATCTAAGCCTTTCACCTCTGCATTACTCTCAGCATTCTTGAGTA
AATCCAGAATGAACTTTGCAGATTTAACCGGCCAGCGACCTTGACCATTT
GGATTACGGTTTTTAGCCTGTGCAGTTCGCCCAACACCGCGACAGAAGCG
GGTGAATGGTATGGCTTGCTTGTGAGCCATAACATCCTCCAAGTACCTT
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