CX296373

Overview
NameCX296373
Unique NameCX296373
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length549
Libraries
Library NameType
FerrChloL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX296373 vs. ExPASy Swiss-Prot
Match: RL22_METMJ (50S ribosomal protein L22P OS=Methanoculleus marisnigri (strain ATCC 35101 / DSM 1498 / JR1) GN=rpl22p PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 1.764e-11
Identity = 43/106 (40.57%), Postives = 59/106 (55.66%), Query Frame = -2
Query:  228 YLEDVMAHKQAIPFTRFCRGVGRTAQAKNRNPNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDALYISHIQVNQAQKQRRRTYRAHGRINPYMSSPCHIELTLS 545
            YL DV+A K+AIPF RF R V   A  +  +    GR+PVK+A+  + LL++ E NAE  GLDV+ L I H   N  +  R    RA GR  P      +IE+ ++
Sbjct:   48 YLTDVVALKKAIPFKRFNRNV---AHKRGLSKWPAGRYPVKAAEAYIRLLESVEKNAEYIGLDVENLRIDHAAANTGRGLRAFFPRAMGRATPKRRETVNIEIVVT 150          
BLAST of CX296373 vs. ExPASy Swiss-Prot
Match: RL22_PYRAB (50S ribosomal protein L22P OS=Pyrococcus abyssi GN=rpl22p PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 2.303e-11
Identity = 42/106 (39.62%), Postives = 58/106 (54.72%), Query Frame = -2
Query:  231 RYLEDVMAHKQAIPFTRFCRGVGRTAQAKNRNPNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDALYISHIQVNQAQKQRRRTYRAHGRINPYMSSPCHIELTL 548
            RYL+DV+A ++ +P  R+    G     K     G GR+PVK AK I  +L NA++NA+ KGLD D L I HI  ++    R    RA GR  P+     HIE+ +
Sbjct:   49 RYLDDVIALRRPVPLKRYNDSQGH----KPGKGFGPGRYPVKVAKAIKKVLLNAQNNAKQKGLDPDKLRIIHIAAHRGPVLRGWYPRAFGRPTPFNEQTTHIEVVV 150          
BLAST of CX296373 vs. ExPASy Swiss-Prot
Match: RL22_PYRFU (50S ribosomal protein L22P OS=Pyrococcus furiosus GN=rpl22p PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 5.131e-11
Identity = 42/106 (39.62%), Postives = 56/106 (52.83%), Query Frame = -2
Query:  231 RYLEDVMAHKQAIPFTRFCRGVGRTAQAKNRNPNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDALYISHIQVNQAQKQRRRTYRAHGRINPYMSSPCHIELTL 548
            RYL+DV+A K+ +P  R+    G     K     G GR+PVK AK I  +L N ++NA  KGLD D L I HI  ++    R    RA GR  P+     HIE+ +
Sbjct:   49 RYLDDVIALKRPVPLKRYNDSQGH----KPGKGFGPGRYPVKVAKAIKKVLLNVKNNAVQKGLDPDKLKIIHIAAHKGPVLRGWYPRAFGRATPFNEQTTHIEVVV 150          
BLAST of CX296373 vs. ExPASy Swiss-Prot
Match: RL22_HALMA (50S ribosomal protein L22P OS=Haloarcula marismortui GN=rpl22p PE=1 SV=2)

HSP 1 Score: 66.6254 bits (161), Expect = 8.753e-11
Identity = 38/105 (36.19%), Postives = 60/105 (57.14%), Query Frame = -2
Query:  231 YLEDVMAHKQAIPFTRFCRGVGRTAQAKNRNPNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDALYISHIQVNQAQKQRRRTYRAHGRINPYMSSPCHIELTL 545
            YLE V+   Q +PF +   GVG  ++    +    GR+P K++K  LDLL+NA  NA+ +G D +A+ I H+  ++  +Q+ R  RA GR + + S    +EL L
Sbjct:   47 YLEAVIEGDQPVPFKQHNSGVGHKSKVDGWDA---GRYPEKASKAFLDLLENAVGNADHQGFDGEAMTIKHVAAHKVGEQQGRKPRAMGRASAWNSPQVDVELIL 148          
The following BLAST results are available for this feature:
BLAST of CX296373 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 64
Match NameE-valueIdentityDescription
RL22_METMJ1.764e-1140.5750S ribosomal protein L22P OS=Methanoculleus maris... [more]
RL22_PYRAB2.303e-1139.6250S ribosomal protein L22P OS=Pyrococcus abyssi GN... [more]
RL22_PYRFU5.131e-1139.6250S ribosomal protein L22P OS=Pyrococcus furiosus ... [more]
RL22_HALMA8.753e-1136.1950S ribosomal protein L22P OS=Haloarcula marismort... [more]

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Properties
Property NameValue
Genbank descriptionC05139G07SK FerrChloL1 Citrus clementina cDNA clone C05139G07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX296373 ID=CX296373; Name=CX296373; organism=Citrus clementina; type=EST; length=549bp
CGAGCCATGGCAAGACAGAATAAACTAAATACTGAACCAACAGAAGTCTT
CAGGAACAAGTATCTTGTAAACAAAATTGTATGTTGTCATGGTAGTACAA
AGGGGGAAAAAAGAGAAATCAAGTCAGGACTCCCAACATTCAAGATAAGG
CACCACTATGTAGCTGTCCTCGGTTTCCTGGAAGCCAACTGGGTCTCCGG
CTCTTTCTTCACAGGTTCCTCCTTTTCTGAGAGTGTCAACTCAATATGAC
ATGGGGAAGACATGTATGGGTTAATCCTTCCATGTGCACGATAAGTCCGA
CGCCTCTGCTTCTGGGCTTGATTCACTTGGATGTGAGAAATGTAAAGCGC
GTCCACATCTAAGCCTTTCACCTCTGCATTACTCTCAGCATTCTTGAGTA
AATCCAGAATGAACTTTGCAGATTTAACCGGCCAGCGACCTTGACCATTT
GGATTACGGTTTTTAGCCTGTGCAGTTCGCCCAACACCGCGACAGAAGCG
GGTGAATGGTATGGCTTGCTTGTGAGCCATAACATCCTCCAAGTACCTT
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