CX296375

Overview
NameCX296375
Unique NameCX296375
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length412
Libraries
Library NameType
FerrChloL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig695 contig Ccv1_Contig695:496..907. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX296375 vs. ExPASy Swiss-Prot
Match: SCP43_ARATH (Serine carboxypeptidase-like 43 OS=Arabidopsis thaliana GN=SCPL43 PE=2 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 1.973e-11
Identity = 49/145 (33.79%), Postives = 69/145 (47.59%), Query Frame = 1
Query:   13 DPCSDKYVNSYLNLAEVQAALHAKHTN----WTTCGD-LRWT--DSPSTVLPTIQQLIASGIRVWIYSGDTDGRVPVTSSRYSINA----LNLPVETAWYPWY-TDXXXXXXXXXXXXXXFTTVRGAGHMVPTNQPQRALIMISS 411
            D C    V   L L ++ A LHA  T     WT C + L ++  D    +LP+++++I +   VWI+SGD D  +P+ SSR  +      LN      +  W+  +              F TVRGA HMVP  +P RAL M SS
Sbjct:  280 DVCYPSIVQQELRLKKMNA-LHANRTRLPYEWTMCSNRLNYSGIDGYIDMLPSLKRIIQNQTPVWIFSGDQDSVIPLQSSRTLVRELAEDLNFKTTIPYGAWFHKEQVGGWVTEYGNLLTFATVRGAAHMVPYAEPSRALHMFSS 423          
BLAST of CX296375 vs. ExPASy Swiss-Prot
Match: CBP1_HORVU (Serine carboxypeptidase 1 OS=Hordeum vulgare GN=CBP1 PE=1 SV=4)

HSP 1 Score: 67.3958 bits (163), Expect = 2.577e-11
Identity = 44/138 (31.88%), Postives = 66/138 (47.83%), Query Frame = 1
Query:   16 PC-SDKYVNSYLNLAEVQAALHAKHTN----WTTCGD-LRWTDSPSTVLPTIQQLIASGIRVWIYSGDTDGRVPVTSSRYSINALNLPVETAWYPWYTD-XXXXXXXXXXXXXXFTTVRGAGHMVPTNQPQRALIMIS 408
            PC SD+   ++L+ A V++A+HA+  +    W  C D L +     +++   + L + G R  I+SGD D  VP T S     +L   V  +W PW T+               F T++GAGH VP  +PQ A    S
Sbjct:  354 PCMSDEVATAWLDNAAVRSAIHAQSVSAIGPWLLCTDKLYFVHDAGSMIAYHKNLTSQGYRAIIFSGDHDMCVPFTGSEAWTKSLGYGVVDSWRPWITNGQVSGYTEGYEHGLTFATIKGAGHTVPEYKPQEAFAFYS 491          
BLAST of CX296375 vs. ExPASy Swiss-Prot
Match: CBP1_ORYSJ (Serine carboxypeptidase 1 OS=Oryza sativa subsp. japonica GN=CBP1 PE=2 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 3.366e-11
Identity = 43/138 (31.16%), Postives = 67/138 (48.55%), Query Frame = 1
Query:   16 PC-SDKYVNSYLNLAEVQAALHAKHTN----WTTCGD-LRWTDSPSTVLPTIQQLIASGIRVWIYSGDTDGRVPVTSSRYSINALNLPVETAWYPWYTD-XXXXXXXXXXXXXXFTTVRGAGHMVPTNQPQRALIMIS 408
            PC SD+   ++LN  +V+AA+HA+  +    W  C + L +     +++   + L   G R +IYSGD D  VP T +     +L   V  +W PW+ +               F T++GAGH VP  +PQ +L   S
Sbjct:  365 PCMSDEVATAWLNNDDVRAAIHAQPVSSIGSWLICTNVLDFIHDAGSMISYHKNLTGQGYRAFIYSGDHDMCVPYTGTEAWTRSLGYGVIDSWRPWHLNGQVSGYTQGYEHGLTFATIKGAGHTVPEYKPQESLAFYS 502          
The following BLAST results are available for this feature:
BLAST of CX296375 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 33
Match NameE-valueIdentityDescription
SCP43_ARATH1.973e-1133.79Serine carboxypeptidase-like 43 OS=Arabidopsis tha... [more]
CBP1_HORVU2.577e-1131.88Serine carboxypeptidase 1 OS=Hordeum vulgare GN=CB... [more]
CBP1_ORYSJ3.366e-1131.16Serine carboxypeptidase 1 OS=Oryza sativa subsp. j... [more]

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Properties
Property NameValue
Genbank descriptionC05139G09SK FerrChloL1 Citrus clementina cDNA clone C05139G09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX296375 ID=CX296375; Name=CX296375; organism=Citrus clementina; type=EST; length=412bp
ATCAGAGAATATGACCCCTGCTCCGACAAGTACGTTAATTCCTATTTAAA
CCTTGCCGAGGTGCAAGCAGCTCTTCATGCGAAACATACCAACTGGACAA
CTTGCGGCGACTTGAGATGGACCGACAGCCCATCAACTGTGCTTCCAACA
ATACAGCAGCTGATAGCAAGTGGAATTAGGGTGTGGATATACAGCGGTGA
CACAGATGGGCGAGTCCCAGTGACATCCTCTAGATACTCCATCAATGCTC
TGAACCTTCCGGTTGAAACTGCTTGGTACCCATGGTACACTGATGGTGAG
GTTGGTGGATATGTGCTCGGGTACAAGGGAGTGGTATTCACTACTGTTAG
AGGGGCAGGGCATATGGTTCCTACTAACCAGCCACAGCGAGCTCTCATCA
TGATCTCATCTT
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