CX296396

Overview
NameCX296396
Unique NameCX296396
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length712
Libraries
Library NameType
FerrChloL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX296396 vs. ExPASy Swiss-Prot
Match: SRPG_SYNE7 (Cysteine synthase, plasmid OS=Synechococcus elongatus (strain PCC 7942) GN=srpG PE=3 SV=1)

HSP 1 Score: 116.701 bits (291), Expect = 1.239e-25
Identity = 67/138 (48.55%), Postives = 88/138 (63.77%), Query Frame = -1
Query:  308 GTVTGAGKYLKE-HNPEIKLYGVEPVESAVLSGG------KPGPHKIQGIGAGFIPGVLDVNLLDETVQISSEEAIETAKLLALKEGLLVGISSGXXXXXXXXXAKRPENAGKLIVVVFPSFGERYLSSVLFESVKKE 700
            GT+TG  +Y+K+     I    VEP  S V+S        KPGPHKIQGIGAGFIP  LD++L+D+  ++S+EEAI  A+ LA +EGL+ GIS G         A++ E+AGK IVVV P  GERYLS+ LF+ +  E
Sbjct:  186 GTITGVSRYIKQTQGKPILSVAVEPEASPVISQQRSGLPLKPGPHKIQGIGAGFIPENLDLSLVDQVERVSNEEAIAYARRLAQEEGLISGISCGAAVAAAVRLAQQSEHAGKTIVVVLPDSGERYLSTALFDGIFNE 323          
BLAST of CX296396 vs. ExPASy Swiss-Prot
Match: CYSK_STAES (Cysteine synthase OS=Staphylococcus epidermidis (strain ATCC 12228) GN=cysK PE=3 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 3.605e-25
Identity = 56/125 (44.80%), Postives = 83/125 (66.40%), Query Frame = -1
Query:  326 GTVTGAGKYLKEHNPEIKLYGVEPVESAVLSGGKPGPHKIQGIGAGFIPGVLDVNLLDETVQISSEEAIETAKLLALKEGLLVGISSGXXXXXXXXXAKRPENAGKLIVVVFPSFGERYLSSVLF 700
            GT++G GK LK+  P +++  +EP  S VLSGG+PGPHK+QG+GAGF+P  L+  + D  +++ ++ A++ A+ +A +EG+L GISSG         AK     GK +V V PS GERYLS+ L+
Sbjct:  183 GTLSGVGKVLKKEYPNVEIVAIEPEASPVLSGGEPGPHKLQGLGAGFVPDTLNTEVYDSIIKVGNDTAMDMARRVAREEGILAGISSGAAIYAAIQKAKE-LGKGKTVVTVLPSNGERYLSTPLY 306          
BLAST of CX296396 vs. ExPASy Swiss-Prot
Match: CYSK_STAEQ (Cysteine synthase OS=Staphylococcus epidermidis (strain ATCC 35984 / RP62A) GN=cysK PE=3 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 3.605e-25
Identity = 56/125 (44.80%), Postives = 83/125 (66.40%), Query Frame = -1
Query:  326 GTVTGAGKYLKEHNPEIKLYGVEPVESAVLSGGKPGPHKIQGIGAGFIPGVLDVNLLDETVQISSEEAIETAKLLALKEGLLVGISSGXXXXXXXXXAKRPENAGKLIVVVFPSFGERYLSSVLF 700
            GT++G GK LK+  P +++  +EP  S VLSGG+PGPHK+QG+GAGF+P  L+  + D  +++ ++ A++ A+ +A +EG+L GISSG         AK     GK +V V PS GERYLS+ L+
Sbjct:  183 GTLSGVGKVLKKEYPNVEIVAIEPEASPVLSGGEPGPHKLQGLGAGFVPDTLNTEVYDSIIKVGNDTAMDMARRVAREEGILAGISSGAAIYAAIQKAKE-LGKGKTVVTVLPSNGERYLSTPLY 306          
BLAST of CX296396 vs. ExPASy Swiss-Prot
Match: CYSK_HAEIN (Cysteine synthase OS=Haemophilus influenzae GN=cysK PE=1 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 3.605e-25
Identity = 65/136 (47.79%), Postives = 86/136 (63.24%), Query Frame = -1
Query:  314 GTVTGAGKYLK-EHNPEIKLYGVEPVESAVLSGG------KPGPHKIQGIGAGFIPGVLDVNLLDETVQISSEEAIETAKLLALKEGLLVGISSGXXXXXXXXXAKRPENAGKLIVVVFPSFGERYLSSVLFESVK 700
            G++TG  + +K +   +I    VEPVES V+S        KPGPHKIQGIGAGFIP  LD++++D    + S+ A+ TA+ L  +EG+L GISSG         AK PE A KLIVV+ PS  ERYLS+ LFE ++
Sbjct:  180 GSITGISRAIKLDFGKQITSVAVEPVESPVISQTLAGEEVKPGPHKIQGIGAGFIPKNLDLSIIDRVETVDSDTALATARRLMAEEGILAGISSGAAVAAADRLAKLPEFADKLIVVILPSASERYLSTALFEGIE 315          
BLAST of CX296396 vs. ExPASy Swiss-Prot
Match: CYSK_SALTY (Cysteine synthase A OS=Salmonella typhimurium GN=cysK PE=1 SV=2)

HSP 1 Score: 113.235 bits (282), Expect = 1.370e-24
Identity = 65/141 (46.10%), Postives = 86/141 (60.99%), Query Frame = -1
Query:  302 GTVTGAGKYLK--EHNPEIKLYGVEPVESAVLSGG------KPGPHKIQGIGAGFIPGVLDVNLLDETVQISSEEAIETAKLLALKEGLLVGISSGXXXXXXXXXAKRPENAGKLIVVVFPSFGERYLSSVLFESVKKEAE 700
            GT+TG  +Y+K  +   ++    VEP +S V++        KPGPHKIQGIGAGFIPG LD+ L+D+ V I++EEAI TA+ L  +EG+L GISSG          +      K IVV+ PS GERYLS+ LF  +  E E
Sbjct:  180 GTLTGVTRYIKGTKGKTDLITVAVEPTDSPVIAQALAGEEIKPGPHKIQGIGAGFIPGNLDLKLIDKVVGITNEEAISTARRLMEEEGILAGISSGAAVAAALKLQEDESFTNKNIVVILPSSGERYLSTALFADLFTEKE 320          
BLAST of CX296396 vs. ExPASy Swiss-Prot
Match: CYSK_SALTI (Cysteine synthase A OS=Salmonella typhi GN=cysK PE=3 SV=2)

HSP 1 Score: 113.235 bits (282), Expect = 1.370e-24
Identity = 65/141 (46.10%), Postives = 86/141 (60.99%), Query Frame = -1
Query:  302 GTVTGAGKYLK--EHNPEIKLYGVEPVESAVLSGG------KPGPHKIQGIGAGFIPGVLDVNLLDETVQISSEEAIETAKLLALKEGLLVGISSGXXXXXXXXXAKRPENAGKLIVVVFPSFGERYLSSVLFESVKKEAE 700
            GT+TG  +Y+K  +   ++    VEP +S V++        KPGPHKIQGIGAGFIPG LD+ L+D+ V I++EEAI TA+ L  +EG+L GISSG          +      K IVV+ PS GERYLS+ LF  +  E E
Sbjct:  180 GTLTGVTRYIKGTKGKTDLITVAVEPTDSPVIAQALAGEEIKPGPHKIQGIGAGFIPGNLDLKLIDKVVGITNEEAISTARRLMEEEGILAGISSGAAVAAALKLQEDESFTNKNIVVILPSSGERYLSTALFADLFTEKE 320          
BLAST of CX296396 vs. ExPASy Swiss-Prot
Match: CYSK_ECOLI (Cysteine synthase A OS=Escherichia coli (strain K12) GN=cysK PE=1 SV=2)

HSP 1 Score: 110.538 bits (275), Expect = 8.880e-24
Identity = 64/141 (45.39%), Postives = 84/141 (59.57%), Query Frame = -1
Query:  302 GTVTGAGKYLKEHNPEIKLYGV--EPVESAVLSGG------KPGPHKIQGIGAGFIPGVLDVNLLDETVQISSEEAIETAKLLALKEGLLVGISSGXXXXXXXXXAKRPENAGKLIVVVFPSFGERYLSSVLFESVKKEAE 700
            GT+TG  +Y+K    +  L  V  EP +S V++        KPGPHKIQGIGAGFIP  LD+ L+D+ + I++EEAI TA+ L  +EG+L GISSG          +      K IVV+ PS GERYLS+ LF  +  E E
Sbjct:  180 GTLTGVSRYIKGTKGKTDLISVAVEPTDSPVIAQALAGEEIKPGPHKIQGIGAGFIPANLDLKLVDKVIGITNEEAISTARRLMEEEGILAGISSGAAVAAALKLQEDESFTNKNIVVILPSSGERYLSTALFADLFTEKE 320          
BLAST of CX296396 vs. ExPASy Swiss-Prot
Match: CYSK_ECO57 (Cysteine synthase A OS=Escherichia coli O157:H7 GN=cysK PE=3 SV=2)

HSP 1 Score: 110.538 bits (275), Expect = 8.880e-24
Identity = 64/141 (45.39%), Postives = 84/141 (59.57%), Query Frame = -1
Query:  302 GTVTGAGKYLKEHNPEIKLYGV--EPVESAVLSGG------KPGPHKIQGIGAGFIPGVLDVNLLDETVQISSEEAIETAKLLALKEGLLVGISSGXXXXXXXXXAKRPENAGKLIVVVFPSFGERYLSSVLFESVKKEAE 700
            GT+TG  +Y+K    +  L  V  EP +S V++        KPGPHKIQGIGAGFIP  LD+ L+D+ + I++EEAI TA+ L  +EG+L GISSG          +      K IVV+ PS GERYLS+ LF  +  E E
Sbjct:  180 GTLTGVSRYIKGTKGKTDLISVAVEPTDSPVIAQALAGEEIKPGPHKIQGIGAGFIPANLDLKLVDKVIGITNEEAISTARRLMEEEGILAGISSGAAVAAALKLQEDESFTNKNIVVILPSSGERYLSTALFADLFTEKE 320          
BLAST of CX296396 vs. ExPASy Swiss-Prot
Match: CYSK_BUCAP (Cysteine synthase OS=Buchnera aphidicola subsp. Schizaphis graminum GN=cysK PE=3 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 8.880e-24
Identity = 71/140 (50.71%), Postives = 86/140 (61.43%), Query Frame = -1
Query:  308 GTVTGAGKYLK--EHNPEIKLYGVEPVESAV----LSGGK--PGPHKIQGIGAGFIPGVLDVNLLDETVQISSEEAIETAKLLALKEGLLVGISSGXXXXXXXXXAKRPENAGKLIVVVFPSFGERYLSSVLF-ESVKKE 700
            GT+TG  KY+K  E   ++    VEP+ES V    LSG K  PG HKIQGIGAGFIP  LD++L+D  + +SSEEAI  AK +  KEG+L GISSG          K  +   K IVV+ PS GERYLS+ LF  S K E
Sbjct:  180 GTITGITKYIKIKEGKKDLISVAVEPLESPVITQFLSGKKIKPGLHKIQGIGAGFIPKNLDLSLIDRIITVSSEEAIFNAKKIMKKEGILSGISSGAAIAAALKIQKENDFKNKNIVVILPSSGERYLSTELFSRSFKNE 319          
BLAST of CX296396 vs. ExPASy Swiss-Prot
Match: CYSK_BUCAI (Cysteine synthase OS=Buchnera aphidicola subsp. Acyrthosiphon pisum GN=cysK PE=3 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 8.880e-24
Identity = 65/136 (47.79%), Postives = 86/136 (63.24%), Query Frame = -1
Query:  317 GTVTGAGKYLKEHNPEIKLYG--VEPVESAVLS---GGK---PGPHKIQGIGAGFIPGVLDVNLLDETVQISSEEAIETAKLLALKEGLLVGISSGXXXXXXXXXAKRPENAGKLIVVVFPSFGERYLSSVLFESV 700
            GT+TG  +Y+K+   +  L    VEP ES V++    GK   PGPHKIQGIG GFIP  LD+ ++D+ + +SSEEAI TAK L  KEG+L GISSG          ++ + + K IVV+ PS GERYLS+ LF  +
Sbjct:  180 GTITGITRYIKKIKRKKNLISIAVEPSESPVITQFLAGKAIEPGPHKIQGIGPGFIPKNLDLTIIDQVITVSSEEAILTAKELMKKEGILAGISSGAALYAAIKIQQQKKFSDKKIVVILPSSGERYLSTELFSEL 315          
The following BLAST results are available for this feature:
BLAST of CX296396 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 51
Match NameE-valueIdentityDescription
SRPG_SYNE71.239e-2548.55Cysteine synthase, plasmid OS=Synechococcus elonga... [more]
CYSK_STAES3.605e-2544.80Cysteine synthase OS=Staphylococcus epidermidis (s... [more]
CYSK_STAEQ3.605e-2544.80Cysteine synthase OS=Staphylococcus epidermidis (s... [more]
CYSK_HAEIN3.605e-2547.79Cysteine synthase OS=Haemophilus influenzae GN=cys... [more]
CYSK_SALTY1.370e-2446.10Cysteine synthase A OS=Salmonella typhimurium GN=c... [more]
CYSK_SALTI1.370e-2446.10Cysteine synthase A OS=Salmonella typhi GN=cysK PE... [more]
CYSK_ECOLI8.880e-2445.39Cysteine synthase A OS=Escherichia coli (strain K1... [more]
CYSK_ECO578.880e-2445.39Cysteine synthase A OS=Escherichia coli O157:H7 GN... [more]
CYSK_BUCAP8.880e-2450.71Cysteine synthase OS=Buchnera aphidicola subsp. Sc... [more]
CYSK_BUCAI8.880e-2447.79Cysteine synthase OS=Buchnera aphidicola subsp. Ac... [more]

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Properties
Property NameValue
Genbank descriptionC05140C04SK FerrChloL1 Citrus clementina cDNA clone C05140C04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX296396 ID=CX296396; Name=CX296396; organism=Citrus clementina; type=EST; length=712bp
AGGCCTCGTGCCGAATTCGGCACGAGGAACACCTACTTCCAAACTTTATT
CATTCTCAAGCACAGCATAGACTACAGAACTTTAACCCATATGAGTTTCC
ACAGATTTTTACACAAACAGTGAAACCTCCTCCAGAGGGTAAGGAATTGC
AAAGATTTGTAGTTGTTTATAAGAAAACATGAAGAAGCCAAAGCATCCAA
CCAAAATGAAATTCTGACTAGAAAAGCAAGTTAGTCCCCACAGAATACGG
GACTGGTGACTCAAAAGGTTTGGGCATATCTCACGGCTCAAACACCATGC
TCTCTGCCTCCTTTTTCACAGATTCAAATAAAACAGAAGAGAGGTATCGC
TCTCCGAAGCTGGGGAAGACCACCACAATGAGTTTTCCAGCATTTTCTGG
CCTCTTTGCTATCCGAATTGCAGCTGCAGTAGCAGCTCCGGATGATATCC
CAACCAACAATCCTTCTTTAAGTGCAAGAAGCTTCGCAGTCTCAATAGCT
TCTTCACTTGATATTTGAACAGTTTCATCTAGTAAATTGACGTCCAAAAC
TCCAGGGATGAAGCCAGCACCTATTCCTTGGATCTTATGGGGACCAGGTT
TCCCTCCAGACAGCACAGCACTTTCAACTGGTTCAACGCCATAGAGCTTA
ATTTCAGGATTATGCTCTTTGAGATACTTCCCTGCACCAGTGACAGTACC
ACAGTCCCTATA
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