CX296404

Overview
NameCX296404
Unique NameCX296404
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length638
Libraries
Library NameType
FerrChloL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX296404 vs. ExPASy Swiss-Prot
Match: NHP2_BRABE (H/ACA ribonucleoprotein complex subunit 2-like protein OS=Branchiostoma belcheri PE=2 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 5.412e-11
Identity = 36/106 (33.96%), Postives = 53/106 (50.00%), Query Frame = 3
Query:   63 VNPKAYPLADSNLTITILDLVQQAANYKQLKKGANEATKTLNRGISEFIVMAADTXXXXXXXXXXXXAEDKNVPYVFVPSKQALGRACGVTRPVIACSVTSNEASQ 380
            VNP A PLA   LT  +   V++A+  K ++KG  +  K + +G    +++A DT             ED  +PY +VP+KQ LG A G  RP     +  NE+ Q
Sbjct:   37 VNPIASPLAARKLTKRLYKTVKKASKEKNIRKGIRDVQKFIKKGERGIVLIAGDTTPIEVYCHLPVVCEDAKIPYCYVPAKQDLGEAAGSKRPTCCVLLKPNESYQ 142          
BLAST of CX296404 vs. ExPASy Swiss-Prot
Match: RL7A_SULAC (50S ribosomal protein L7Ae OS=Sulfolobus acidocaldarius GN=rpl7ae PE=3 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 9.231e-11
Identity = 33/105 (31.43%), Postives = 59/105 (56.19%), Query Frame = 3
Query:  111 ILDLVQQAANYKQLKKGANEATKTLNRGISEFIVMAADTXXXXXXXXXXXXAEDKNVPYVFVPSKQALGRACGVTRPVIACSVTSNEASQLKTQIQQLKDAIEKL 425
            +L+ V++A +  ++KKG NE TK + R  ++ +V+A D              E+K +PYV+VPSK++LG ACG+   V A SV   +  + K  + ++   + ++
Sbjct:   19 VLEAVKKAKDSGKIKKGTNETTKAVERSQAKLVVIAEDVQPEEIVAHLPLLCEEKKIPYVYVPSKKSLGEACGL--QVAAASVALMDPGEAKDLVDEIVKRVNEI 121          
BLAST of CX296404 vs. ExPASy Swiss-Prot
Match: RL7A_AERPE (50S ribosomal protein L7Ae OS=Aeropyrum pernix GN=rpl7ae PE=1 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 9.231e-11
Identity = 33/103 (32.04%), Postives = 59/103 (57.28%), Query Frame = 3
Query:  117 DLVQQAANYKQLKKGANEATKTLNRGISEFIVMAADTXXXXXXXXXXXXAEDKNVPYVFVPSKQALGRACGVTRPVIACSVTSNEASQLKTQIQQLKDAIEKL 425
            + V++A    ++KKG NE TK + RG+++ +V+A D              ++K +PYV+VPSK+ LG A G+   V A SV   E    +T ++++ + +++L
Sbjct:   21 EAVKRARETGRIKKGTNETTKAVERGLAKLVVIAEDVDPPEIVMHLPLLCDEKKIPYVYVPSKKRLGEAAGI--EVAAASVAIIEPGDAETLVREIVEKVKEL 121          
The following BLAST results are available for this feature:
BLAST of CX296404 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 33
Match NameE-valueIdentityDescription
NHP2_BRABE5.412e-1133.96H/ACA ribonucleoprotein complex subunit 2-like pro... [more]
RL7A_SULAC9.231e-1131.4350S ribosomal protein L7Ae OS=Sulfolobus acidocald... [more]
RL7A_AERPE9.231e-1132.0450S ribosomal protein L7Ae OS=Aeropyrum pernix GN=... [more]

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Properties
Property NameValue
Genbank descriptionC05140D03SK FerrChloL1 Citrus clementina cDNA clone C05140D03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX296404 ID=CX296404; Name=CX296404; organism=Citrus clementina; type=EST; length=638bp
CATTAGCTGCCACAAAAACCCTAGCCTCCGTCCCCGCCACCACGAAAATG
ACAGGAGAAGCAGTGAACCCTAAAGCTTACCCGCTAGCAGATTCTAATCT
CACAATCACGATACTGGATCTCGTTCAGCAAGCTGCCAATTACAAGCAGC
TCAAAAAGGGCGCCAATGAAGCTACTAAGACTCTTAACAGAGGTATCTCC
GAGTTTATTGTGATGGCTGCTGATACCGAGCCTCTGGAGATTCTTCTTCA
TCTTCCACTGCTTGCAGAGGACAAGAATGTTCCCTATGTTTTTGTCCCTT
CAAAGCAGGCTCTTGGCAGGGCATGTGGGGTCACAAGACCTGTCATTGCT
TGCTCTGTGACCTCAAATGAGGCGAGTCAGTTGAAGACTCAAATTCAACA
GCTGAAGGATGCCATTGAGAAGCTCTTGATATGAATATAATGGGATTCAT
ATTCGGTGTGATGGGCCTCTTTGATGGTGGTTAGAGGCTTTGACTGATGG
TGTAGTTGTGCTGCTTGGAAATCTTCTATTATTAATCTTTGTATTTTTGT
CTTTTATGTTTTCTTGTCATGCATTATGGGAAAGCTTTTGGAATCATATT
TACCAGAACCTGCAATGAAAAAAAAAAAAAAAAAAAAA
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