CX296417
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CX296417 vs. ExPASy Swiss-Prot
Match: RCAA_HORVU (Ribulose bisphosphate carboxylase/oxygenase activase A, chloroplastic OS=Hordeum vulgare GN=RCAA PE=2 SV=1) HSP 1 Score: 125.176 bits (313), Expect = 1.050e-28 Identity = 57/84 (67.86%), Postives = 71/84 (84.52%), Query Frame = 3 Query: 15 RHEGIGVCKGIFRNDNVADDDIVKLVDTFPGQSIDFFGALRAKVYDDEVRKCISGVGVESIDKSLVNSKEAAPTFEQPRMTMEK 266 R + IGVCKGIF+ DNV+D+ +VK+VDTFPGQSIDFFGALRA+VYDDEVRK + G+E+I K LVNS++ TFEQP+MT+EK Sbjct: 299 RDDRIGVCKGIFQTDNVSDESVVKIVDTFPGQSIDFFGALRARVYDDEVRKWVGSTGIENIGKRLVNSRDGPVTFEQPKMTVEK 382
BLAST of CX296417 vs. ExPASy Swiss-Prot
Match: RCA_MAIZE (Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic OS=Zea mays GN=RCA1 PE=2 SV=3) HSP 1 Score: 124.02 bits (310), Expect = 2.339e-28 Identity = 58/84 (69.05%), Postives = 71/84 (84.52%), Query Frame = 3 Query: 15 RHEGIGVCKGIFRNDNVADDDIVKLVDTFPGQSIDFFGALRAKVYDDEVRKCISGVGVESIDKSLVNSKEAAPTFEQPRMTMEK 266 R + IGVCKGIFR D V ++ +V+LVDTFPGQSIDFFGALRA+VYDDEVR+ +S GVE+I + LVNSKE PTFEQP++T+EK Sbjct: 305 REDRIGVCKGIFRTDGVDEEHVVQLVDTFPGQSIDFFGALRARVYDDEVRRWVSETGVENIARKLVNSKEGPPTFEQPKITIEK 388
BLAST of CX296417 vs. ExPASy Swiss-Prot
Match: RCA_ARATH (Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic OS=Arabidopsis thaliana GN=RCA PE=1 SV=2) HSP 1 Score: 124.02 bits (310), Expect = 2.339e-28 Identity = 59/84 (70.24%), Postives = 66/84 (78.57%), Query Frame = 3 Query: 15 RHEGIGVCKGIFRNDNVADDDIVKLVDTFPGQSIDFFGALRAKVYDDEVRKCISGVGVESIDKSLVNSKEAAPTFEQPRMTMEK 266 R + IGVCKGIFR D + D+DIV LVD FPGQSIDFFGALRA+VYDDEVRK + +GVE I K LVNS+E P FEQP MT EK Sbjct: 309 REDRIGVCKGIFRTDKIKDEDIVTLVDQFPGQSIDFFGALRARVYDDEVRKFVESLGVEKIGKRLVNSREGPPVFEQPEMTYEK 392
BLAST of CX296417 vs. ExPASy Swiss-Prot
Match: RCA1_TOBAC (Ribulose bisphosphate carboxylase/oxygenase activase 1, chloroplastic OS=Nicotiana tabacum PE=2 SV=1) HSP 1 Score: 123.25 bits (308), Expect = 3.989e-28 Identity = 57/84 (67.86%), Postives = 68/84 (80.95%), Query Frame = 3 Query: 15 RHEGIGVCKGIFRNDNVADDDIVKLVDTFPGQSIDFFGALRAKVYDDEVRKCISGVGVESIDKSLVNSKEAAPTFEQPRMTMEK 266 R + IGVC GIFR DNV +D+VK+VD FPGQSIDFFGALRA+VYDDEVRK +SG G+E I L+NS + PTFEQP+MT+EK Sbjct: 313 REDRIGVCTGIFRTDNVPAEDVVKIVDNFPGQSIDFFGALRARVYDDEVRKWVSGTGIEKIGDKLLNSFDGPPTFEQPKMTIEK 396
BLAST of CX296417 vs. ExPASy Swiss-Prot
Match: RCA_SPIOL (Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic OS=Spinacia oleracea PE=1 SV=2) HSP 1 Score: 115.546 bits (288), Expect = 8.318e-26 Identity = 53/84 (63.10%), Postives = 66/84 (78.57%), Query Frame = 3 Query: 15 RHEGIGVCKGIFRNDNVADDDIVKLVDTFPGQSIDFFGALRAKVYDDEVRKCISGVGVESIDKSLVNSKEAAPTFEQPRMTMEK 266 R + IGVC GIF+ D V + +VKLVD FPGQSIDFFGALRA+VY DEVRK ++ VGV+++ K LVNSK+ P FEQP MT++K Sbjct: 307 REDRIGVCTGIFKTDKVPAEHVVKLVDAFPGQSIDFFGALRARVYHDEVRKWVNSVGVDNVGKKLVNSKDGPPVFEQPEMTLQK 390
BLAST of CX296417 vs. ExPASy Swiss-Prot
Match: RCA_CHLRE (Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic OS=Chlamydomonas reinhardtii PE=2 SV=1) HSP 1 Score: 90.1225 bits (222), Expect = 3.742e-18 Identity = 44/83 (53.01%), Postives = 60/83 (72.29%), Query Frame = 3 Query: 15 RHEGIGVCKGIFRNDNVADDDIVKLVDTFPGQSIDFFGALRAKVYDDEVRKCISGVGVESIDKSLVNSKEAAPTFEQPRMTME 263 R + IGVC GIF+ DNV ++ LVDTFPGQSIDFFGALRA+VYDD VR+ I+ GV+ I + LVN+++ P+++M+ Sbjct: 282 REDRIGVCMGIFQEDNVQRREVENLVDTFPGQSIDFFGALRARVYDDMVRQWITDTGVDKIGQQLVNARQKV---AMPKVSMD 361
BLAST of CX296417 vs. ExPASy Swiss-Prot
Match: RCA_ANASC (Ribulose bisphosphate carboxylase/oxygenase activase OS=Anabaena sp. (strain CA / ATCC 33047) GN=rca PE=3 SV=1) HSP 1 Score: 85.1149 bits (209), Expect = 1.204e-16 Identity = 38/82 (46.34%), Postives = 56/82 (68.29%), Query Frame = 3 Query: 15 RHEGIGVCKGIFRNDNVADDDIVKLVDTFPGQSIDFFGALRAKVYDDEVRKCISGVGVESIDKSLVNSKEAAPTFEQPRMTM 260 R E +G+ GIF D ++ D+ KLVD+FP QSIDFF ALR+++YD+++R I VG E++ +VNS E P F++P T+ Sbjct: 182 RDEKVGIVGGIFAEDGLSQRDVEKLVDSFPNQSIDFFSALRSRIYDEQIRDFIHQVGYENVSLRVVNSLEGPPAFKKPDFTL 263
BLAST of CX296417 vs. ExPASy Swiss-Prot
Match: RCA_ANASP (Ribulose bisphosphate carboxylase/oxygenase activase OS=Anabaena sp. (strain PCC 7120) GN=rca PE=3 SV=1) HSP 1 Score: 79.337 bits (194), Expect = 6.606e-15 Identity = 38/82 (46.34%), Postives = 55/82 (67.07%), Query Frame = 3 Query: 15 RHEGIGVCKGIFRNDNVADDDIVKLVDTFPGQSIDFFGALRAKVYDDEVRKCISGVGVESIDKSLVNSKEAAPTFEQPRMTM 260 R + +G+ GIF D ++ +I +LVDTFP QSIDFF ALR+++YD ++R I VG E I +VNS EA P F++P ++ Sbjct: 182 RDDKVGIVGGIFAEDGLSQREIEQLVDTFPKQSIDFFSALRSRIYDIQIRDFIHKVGFERISLRVVNSLEAPPEFKKPDFSL 263 The following BLAST results are available for this feature:
BLAST of CX296417 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 18
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Sequences
The
following sequences are available for this feature:
EST sequence >CX296417 ID=CX296417; Name=CX296417; organism=Citrus clementina; type=EST; length=267bpback to top |