CX296417

Overview
NameCX296417
Unique NameCX296417
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length267
Libraries
Library NameType
FerrChloL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX296417 vs. ExPASy Swiss-Prot
Match: RCAA_HORVU (Ribulose bisphosphate carboxylase/oxygenase activase A, chloroplastic OS=Hordeum vulgare GN=RCAA PE=2 SV=1)

HSP 1 Score: 125.176 bits (313), Expect = 1.050e-28
Identity = 57/84 (67.86%), Postives = 71/84 (84.52%), Query Frame = 3
Query:   15 RHEGIGVCKGIFRNDNVADDDIVKLVDTFPGQSIDFFGALRAKVYDDEVRKCISGVGVESIDKSLVNSKEAAPTFEQPRMTMEK 266
            R + IGVCKGIF+ DNV+D+ +VK+VDTFPGQSIDFFGALRA+VYDDEVRK +   G+E+I K LVNS++   TFEQP+MT+EK
Sbjct:  299 RDDRIGVCKGIFQTDNVSDESVVKIVDTFPGQSIDFFGALRARVYDDEVRKWVGSTGIENIGKRLVNSRDGPVTFEQPKMTVEK 382          
BLAST of CX296417 vs. ExPASy Swiss-Prot
Match: RCA_MAIZE (Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic OS=Zea mays GN=RCA1 PE=2 SV=3)

HSP 1 Score: 124.02 bits (310), Expect = 2.339e-28
Identity = 58/84 (69.05%), Postives = 71/84 (84.52%), Query Frame = 3
Query:   15 RHEGIGVCKGIFRNDNVADDDIVKLVDTFPGQSIDFFGALRAKVYDDEVRKCISGVGVESIDKSLVNSKEAAPTFEQPRMTMEK 266
            R + IGVCKGIFR D V ++ +V+LVDTFPGQSIDFFGALRA+VYDDEVR+ +S  GVE+I + LVNSKE  PTFEQP++T+EK
Sbjct:  305 REDRIGVCKGIFRTDGVDEEHVVQLVDTFPGQSIDFFGALRARVYDDEVRRWVSETGVENIARKLVNSKEGPPTFEQPKITIEK 388          
BLAST of CX296417 vs. ExPASy Swiss-Prot
Match: RCA_ARATH (Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic OS=Arabidopsis thaliana GN=RCA PE=1 SV=2)

HSP 1 Score: 124.02 bits (310), Expect = 2.339e-28
Identity = 59/84 (70.24%), Postives = 66/84 (78.57%), Query Frame = 3
Query:   15 RHEGIGVCKGIFRNDNVADDDIVKLVDTFPGQSIDFFGALRAKVYDDEVRKCISGVGVESIDKSLVNSKEAAPTFEQPRMTMEK 266
            R + IGVCKGIFR D + D+DIV LVD FPGQSIDFFGALRA+VYDDEVRK +  +GVE I K LVNS+E  P FEQP MT EK
Sbjct:  309 REDRIGVCKGIFRTDKIKDEDIVTLVDQFPGQSIDFFGALRARVYDDEVRKFVESLGVEKIGKRLVNSREGPPVFEQPEMTYEK 392          
BLAST of CX296417 vs. ExPASy Swiss-Prot
Match: RCA1_TOBAC (Ribulose bisphosphate carboxylase/oxygenase activase 1, chloroplastic OS=Nicotiana tabacum PE=2 SV=1)

HSP 1 Score: 123.25 bits (308), Expect = 3.989e-28
Identity = 57/84 (67.86%), Postives = 68/84 (80.95%), Query Frame = 3
Query:   15 RHEGIGVCKGIFRNDNVADDDIVKLVDTFPGQSIDFFGALRAKVYDDEVRKCISGVGVESIDKSLVNSKEAAPTFEQPRMTMEK 266
            R + IGVC GIFR DNV  +D+VK+VD FPGQSIDFFGALRA+VYDDEVRK +SG G+E I   L+NS +  PTFEQP+MT+EK
Sbjct:  313 REDRIGVCTGIFRTDNVPAEDVVKIVDNFPGQSIDFFGALRARVYDDEVRKWVSGTGIEKIGDKLLNSFDGPPTFEQPKMTIEK 396          
BLAST of CX296417 vs. ExPASy Swiss-Prot
Match: RCA_SPIOL (Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic OS=Spinacia oleracea PE=1 SV=2)

HSP 1 Score: 115.546 bits (288), Expect = 8.318e-26
Identity = 53/84 (63.10%), Postives = 66/84 (78.57%), Query Frame = 3
Query:   15 RHEGIGVCKGIFRNDNVADDDIVKLVDTFPGQSIDFFGALRAKVYDDEVRKCISGVGVESIDKSLVNSKEAAPTFEQPRMTMEK 266
            R + IGVC GIF+ D V  + +VKLVD FPGQSIDFFGALRA+VY DEVRK ++ VGV+++ K LVNSK+  P FEQP MT++K
Sbjct:  307 REDRIGVCTGIFKTDKVPAEHVVKLVDAFPGQSIDFFGALRARVYHDEVRKWVNSVGVDNVGKKLVNSKDGPPVFEQPEMTLQK 390          
BLAST of CX296417 vs. ExPASy Swiss-Prot
Match: RCA_CHLRE (Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic OS=Chlamydomonas reinhardtii PE=2 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 3.742e-18
Identity = 44/83 (53.01%), Postives = 60/83 (72.29%), Query Frame = 3
Query:   15 RHEGIGVCKGIFRNDNVADDDIVKLVDTFPGQSIDFFGALRAKVYDDEVRKCISGVGVESIDKSLVNSKEAAPTFEQPRMTME 263
            R + IGVC GIF+ DNV   ++  LVDTFPGQSIDFFGALRA+VYDD VR+ I+  GV+ I + LVN+++       P+++M+
Sbjct:  282 REDRIGVCMGIFQEDNVQRREVENLVDTFPGQSIDFFGALRARVYDDMVRQWITDTGVDKIGQQLVNARQKV---AMPKVSMD 361          
BLAST of CX296417 vs. ExPASy Swiss-Prot
Match: RCA_ANASC (Ribulose bisphosphate carboxylase/oxygenase activase OS=Anabaena sp. (strain CA / ATCC 33047) GN=rca PE=3 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 1.204e-16
Identity = 38/82 (46.34%), Postives = 56/82 (68.29%), Query Frame = 3
Query:   15 RHEGIGVCKGIFRNDNVADDDIVKLVDTFPGQSIDFFGALRAKVYDDEVRKCISGVGVESIDKSLVNSKEAAPTFEQPRMTM 260
            R E +G+  GIF  D ++  D+ KLVD+FP QSIDFF ALR+++YD+++R  I  VG E++   +VNS E  P F++P  T+
Sbjct:  182 RDEKVGIVGGIFAEDGLSQRDVEKLVDSFPNQSIDFFSALRSRIYDEQIRDFIHQVGYENVSLRVVNSLEGPPAFKKPDFTL 263          
BLAST of CX296417 vs. ExPASy Swiss-Prot
Match: RCA_ANASP (Ribulose bisphosphate carboxylase/oxygenase activase OS=Anabaena sp. (strain PCC 7120) GN=rca PE=3 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 6.606e-15
Identity = 38/82 (46.34%), Postives = 55/82 (67.07%), Query Frame = 3
Query:   15 RHEGIGVCKGIFRNDNVADDDIVKLVDTFPGQSIDFFGALRAKVYDDEVRKCISGVGVESIDKSLVNSKEAAPTFEQPRMTM 260
            R + +G+  GIF  D ++  +I +LVDTFP QSIDFF ALR+++YD ++R  I  VG E I   +VNS EA P F++P  ++
Sbjct:  182 RDDKVGIVGGIFAEDGLSQREIEQLVDTFPKQSIDFFSALRSRIYDIQIRDFIHKVGFERISLRVVNSLEAPPEFKKPDFSL 263          
The following BLAST results are available for this feature:
BLAST of CX296417 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 18
Match NameE-valueIdentityDescription
RCAA_HORVU1.050e-2867.86Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCA_MAIZE2.339e-2869.05Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCA_ARATH2.339e-2870.24Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCA1_TOBAC3.989e-2867.86Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCA_SPIOL8.318e-2663.10Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCA_CHLRE3.742e-1853.01Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCA_ANASC1.204e-1646.34Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCA_ANASP6.606e-1546.34Ribulose bisphosphate carboxylase/oxygenase activa... [more]

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Properties
Property NameValue
Genbank descriptionC05140F02SK FerrChloL1 Citrus clementina cDNA clone C05140F02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX296417 ID=CX296417; Name=CX296417; organism=Citrus clementina; type=EST; length=267bp
CCTCGTGCCTAATTCGGCACGAGGGTATTGGTGTGTGCAAGGGTATCTTC
AGGAATGACAATGTGGCTGATGACGACATTGTCAAGCTTGTCGACACCTT
CCCCGGCCAATCCATTGATTTCTTTGGAGCCCTGAGGGCCAAAGTCTATG
ATGATGAGGTGAGGAAATGCATCTCTGGTGTTGGTGTTGAAAGCATTGAC
AAGAGCCTTGTGAACTCAAAGGAAGCAGCCCCAACATTCGAGCAACCAAG
GATGACAATGGAGAAGC
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