CX296424

Overview
NameCX296424
Unique NameCX296424
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length687
Libraries
Library NameType
FerrChloL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15331 contig Ccv1_Contig15331:498..1185. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX296424 vs. ExPASy Swiss-Prot
Match: ERF99_ARATH (Ethylene-responsive transcription factor 13 OS=Arabidopsis thaliana GN=ERF13 PE=2 SV=2)

HSP 1 Score: 90.8929 bits (224), Expect = 6.836e-18
Identity = 53/117 (45.30%), Postives = 68/117 (58.12%), Query Frame = -2
Query:  306 YRGVRRRPWGKYAAEIRDPTRRGVRVWLGTFDTXXXXXXXXXXXAFQLRGSKAILNFPLEAGKCDSNAAVARECDSSAEAGACE---TKRKRDCESEEEERKAKVVKTESADTVNEF 647
            YRGVRRRPWGK+AAEIRDP + G RVWLGT++T           AFQLRGSKA LNFP   G C       R    S E    +   +++KR  ES  ++ ++ +V  E   TV++F
Sbjct:   92 YRGVRRRPWGKFAAEIRDPKKNGARVWLGTYETPEDAAVAYDRAAFQLRGSKAKLNFPHLIGSCKYEPVRIRPRRRSPEPSVSDQLTSEQKR--ESHVDDGESSLVVPELDFTVDQF 206          
BLAST of CX296424 vs. ExPASy Swiss-Prot
Match: ERF1_TOBAC (Ethylene-responsive transcription factor 1 OS=Nicotiana tabacum GN=ERF1 PE=2 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 1.989e-17
Identity = 50/118 (42.37%), Postives = 69/118 (58.47%), Query Frame = -2
Query:  333 KHYRGVRRRPWGKYAAEIRDPTRRGVRVWLGTFDTXXXXXXXXXXXAFQLRGSKAILNFPLEAG-------KCDSNAAVARECDSSAEAGACETKRK----RDCESEEEERKAKVVKT 653
            +HYRGVRRRPWGK+AAEIRDP + G RVWLGT++T           A+++RGSKA LNFP   G       +  +    + E  SS+E  + + +RK       E+ E E K+ V++T
Sbjct:  103 RHYRGVRRRPWGKFAAEIRDPAKNGARVWLGTYETDEEAAIAYDKAAYRMRGSKAHLNFPHRIGLNEPEPVRVTAKRRASPEPASSSENSSPKRRRKAVATEKSEAVEVESKSNVLQT 220          
BLAST of CX296424 vs. ExPASy Swiss-Prot
Match: ERF1_SOLLC (Ethylene-responsive transcription factor 1 OS=Solanum lycopersicum GN=ERF1 PE=2 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 3.393e-17
Identity = 48/121 (39.67%), Postives = 70/121 (57.85%), Query Frame = -2
Query:  336 KHYRGVRRRPWGKYAAEIRDPTRRGVRVWLGTFDTXXXXXXXXXXXAFQLRGSKAILNFPLEAG-----------KCDSNAAVARECDSSAEAGACETKRK----RDCESEEEERKAKVVK 653
            +HYRGVR+RPWGK+AAEIRDP + G RVWLGT+++           AF++RG+KA+LNFP   G           K   + + +    S++E+G+ + +RK    +  E E E R   V+K
Sbjct:  105 RHYRGVRQRPWGKFAAEIRDPAKNGARVWLGTYESAEEAALAYGKAAFRMRGTKALLNFPHRIGLNEPEPVRVTVKRRLSESASSSVSSASESGSPKRRRKGVAAKQAELEVESRGPNVMK 225          
BLAST of CX296424 vs. ExPASy Swiss-Prot
Match: EF100_ARATH (Ethylene-responsive transcription factor 1A OS=Arabidopsis thaliana GN=ERF1A PE=1 SV=2)

HSP 1 Score: 88.5817 bits (218), Expect = 3.393e-17
Identity = 45/93 (48.39%), Postives = 58/93 (62.37%), Query Frame = -2
Query:  387 KHYRGVRRRPWGKYAAEIRDPTRRGVRVWLGTFDTXXXXXXXXXXXAFQLRGSKAILNFPLEAGKCDSNAAVAR----ECDSSAEAGACETKR 653
            KHYRGVR+RPWGK+AAEIRDP + G RVWLGTF+T           AF++RGS+A+LNFPL     + +    +       SS E GA + +R
Sbjct:  146 KHYRGVRQRPWGKFAAEIRDPAKNGARVWLGTFETAEDAALAYDRAAFRMRGSRALLNFPLRVNSGEPDPVRIKSKRSSFSSSNENGAPKKRR 238          
BLAST of CX296424 vs. ExPASy Swiss-Prot
Match: ERF2_TOBAC (Ethylene-responsive transcription factor 2 OS=Nicotiana tabacum GN=ERF2 PE=2 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 2.199e-16
Identity = 44/106 (41.51%), Postives = 58/106 (54.72%), Query Frame = -2
Query:  336 KHYRGVRRRPWGKYAAEIRDPTRRGVRVWLGTFDTXXXXXXXXXXXAFQLRGSKAILNFPLEAGKCDSNAAVARECDSSAEAGACETKRKRDCESEEEERKAKVVK 653
            +HYRGVR+RPWGK+AAEIRDP + G RVWLGT++T           A+++RGSKA+LNFP   G  +           S E  +       +  S +  RKA   K
Sbjct:   97 RHYRGVRQRPWGKFAAEIRDPAKNGARVWLGTYETAEEAALAYDKAAYRMRGSKALLNFPHRIGLNEPEPVRLTAKRRSPEPASSSISSALENGSPKRRRKAVAAK 202          
BLAST of CX296424 vs. ExPASy Swiss-Prot
Match: PTI5_SOLLC (Pathogenesis-related genes transcriptional activator PTI5 OS=Solanum lycopersicum GN=PTI5 PE=2 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 3.751e-16
Identity = 40/62 (64.52%), Postives = 45/62 (72.58%), Query Frame = -2
Query:  468 KHYRGVRRRPWGKYAAEIRDPTRRGVRVWLGTFDTXXXXXXXXXXXAFQLRGSKAILNFPLE 653
            K YRGVRRRPWGKYAAEIRD  R G RVWLGTF+T           AF++RG+KA+LNFP E
Sbjct:   57 KKYRGVRRRPWGKYAAEIRDSARHGARVWLGTFETAEEAALAYDRAAFRMRGAKALLNFPSE 118          
BLAST of CX296424 vs. ExPASy Swiss-Prot
Match: ERF2_NICSY (Ethylene-responsive transcription factor 2 OS=Nicotiana sylvestris GN=ERF2 PE=2 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 4.899e-16
Identity = 37/64 (57.81%), Postives = 47/64 (73.44%), Query Frame = -2
Query:  462 KHYRGVRRRPWGKYAAEIRDPTRRGVRVWLGTFDTXXXXXXXXXXXAFQLRGSKAILNFPLEAG 653
            +HYRGVR+RPWGK+AAEIRDP + G RVWLGT++T           A+++RGSKA+LNFP   G
Sbjct:  101 RHYRGVRQRPWGKFAAEIRDPAKNGARVWLGTYETAEEAALAYDKAAYRMRGSKALLNFPHRIG 164          
BLAST of CX296424 vs. ExPASy Swiss-Prot
Match: ERF97_ARATH (Ethylene-responsive transcription factor 14 OS=Arabidopsis thaliana GN=ERF14 PE=2 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 6.399e-16
Identity = 42/84 (50.00%), Postives = 52/84 (61.90%), Query Frame = -2
Query:  411 SEEKHYRGVRRRPWGKYAAEIRDPTRRGVRVWLGTFDTXXXXXXXXXXXAFQLRGSKAILNFPLEAGKCDSNAAVARECDSSAE 662
            +E+  YRGVRRRPWGKYAAEIRD  + G RVWLGTFDT           A+ +RG  AILNFP E      +++ A    SS++
Sbjct:   15 AEQGKYRGVRRRPWGKYAAEIRDSRKHGERVWLGTFDTAEDAARAYDRAAYSMRGKAAILNFPHEYNMGTGSSSTAANSSSSSQ 98          
BLAST of CX296424 vs. ExPASy Swiss-Prot
Match: ERF96_ARATH (Ethylene-responsive transcription factor ERF096 OS=Arabidopsis thaliana GN=ERF096 PE=2 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 8.357e-16
Identity = 46/94 (48.94%), Postives = 55/94 (58.51%), Query Frame = -2
Query:  384 SEEKHYRGVRRRPWGKYAAEIRDPTRRGVRVWLGTFDTXXXXXXXXXXXAFQLRGSKAILNFPLEAGKCDS-NAAVARECDSSAEAGACETKRK 662
            +E   YRGVRRRPWGKYAAEIRD  + G RVWLGTFDT           A+ +RG  AILNFP E       +++ A    SSA A A  + R+
Sbjct:   10 AEHGKYRGVRRRPWGKYAAEIRDSRKHGERVWLGTFDTAEEAARAYDQAAYSMRGQAAILNFPHEYNMGSGVSSSTAMAGSSSASASASSSSRQ 103          
BLAST of CX296424 vs. ExPASy Swiss-Prot
Match: ERF92_ARATH (Ethylene-responsive transcription factor 1B OS=Arabidopsis thaliana GN=ERF1B PE=2 SV=2)

HSP 1 Score: 83.9593 bits (206), Expect = 8.357e-16
Identity = 40/63 (63.49%), Postives = 45/63 (71.43%), Query Frame = -2
Query:  468 EKHYRGVRRRPWGKYAAEIRDPTRRGVRVWLGTFDTXXXXXXXXXXXAFQLRGSKAILNFPLE 656
            EK YRGVRRRPWGK+AAEIRD TR G+RVWLGTF++           AF +RGS AILNF  E
Sbjct:   79 EKSYRGVRRRPWGKFAAEIRDSTRNGIRVWLGTFESAEEAALAYDQAAFSMRGSSAILNFSAE 141          
The following BLAST results are available for this feature:
BLAST of CX296424 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 53
Match NameE-valueIdentityDescription
ERF99_ARATH6.836e-1845.30Ethylene-responsive transcription factor 13 OS=Ara... [more]
ERF1_TOBAC1.989e-1742.37Ethylene-responsive transcription factor 1 OS=Nico... [more]
ERF1_SOLLC3.393e-1739.67Ethylene-responsive transcription factor 1 OS=Sola... [more]
EF100_ARATH3.393e-1748.39Ethylene-responsive transcription factor 1A OS=Ara... [more]
ERF2_TOBAC2.199e-1641.51Ethylene-responsive transcription factor 2 OS=Nico... [more]
PTI5_SOLLC3.751e-1664.52Pathogenesis-related genes transcriptional activat... [more]
ERF2_NICSY4.899e-1657.81Ethylene-responsive transcription factor 2 OS=Nico... [more]
ERF97_ARATH6.399e-1650.00Ethylene-responsive transcription factor 14 OS=Ara... [more]
ERF96_ARATH8.357e-1648.94Ethylene-responsive transcription factor ERF096 OS... [more]
ERF92_ARATH8.357e-1663.49Ethylene-responsive transcription factor 1B OS=Ara... [more]

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Properties
Property NameValue
Genbank descriptionC05140G04SK FerrChloL1 Citrus clementina cDNA clone C05140G04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX296424 ID=CX296424; Name=CX296424; organism=Citrus clementina; type=EST; length=687bp
AGGTTTTTTTTTTTTTTTTTTTTTTTAGAATAAAATCAATCAACTCATTT
TTTAAGCTCCAAGAATTAATCAAAAAGTAATTTTATTTTTCAAAAAGATT
TATATGTGCATGTGCAATCCGAAAGCTCCACGTCAGACATAATACCCGCC
ACGCCAATTATACTACTCAAAGTCAAAAGTCAAAGAACCATCAACGGTTG
AGGCGATAACGGCGACAGTAGAGGGGCGTTGAATATCCCTTTCACACCAC
AGTCCCAGTCCAAATGCAAGTCCCAAAACGCCGCGCAACTCGCCGGCGTC
AAAGGAAATTCATTAACTGTATCCGCAGACTCCGTTTTCACCACCTTGGC
TTTTCTCTCCTCTTCTTCGCTTTCACAGTCCCTCTTCCGTTTCGTTTCAC
ACGCGCCAGCCTCGGCGCTCGAGTCACACTCTCTAGCCACCGCAGCGTTT
GAGTCGCACTTGCCGGCTTCAAGAGGAAAGTTGAGGATCGCTTTCGAGCC
GCGCAGCTGGAAAGCGGCACGGTCGTACGCCCTAGCTGCTTCAATGGCCG
TGTCAAATGTCCCCAGCCAGACACGTACGCCTCTCCGGGTAGGATCTCGG
ATCTCGGCCGCGTACTTTCCCCACGGCCTCCGTCGAACTCCTCTGTAATG
CTTTTCTTCCGACTCTCAGGTTTGGCCTTGCTTTTCC
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