CX296424

Overview
NameCX296424
Unique NameCX296424
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length687
Libraries
Library NameType
FerrChloL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15331 contig Ccv1_Contig15331:498..1185. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX296424 vs. ExPASy Swiss-Prot
Match: ERF93_ARATH (Ethylene-responsive transcription factor 15 OS=Arabidopsis thaliana GN=ERF15 PE=2 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 1.862e-15
Identity = 39/64 (60.94%), Postives = 45/64 (70.31%), Query Frame = -2
Query:  468 EEKHYRGVRRRPWGKYAAEIRDPTRRGVRVWLGTFDTXXXXXXXXXXXAFQLRGSKAILNFPLE 659
            EE+ YRGVR+RPWGK+AAEIRD TR G+RVWLGTFD            AF  +GS A LNFP+E
Sbjct:   82 EERSYRGVRKRPWGKFAAEIRDSTRNGIRVWLGTFDKAEEAALAYDQAAFATKGSLATLNFPVE 145          
BLAST of CX296424 vs. ExPASy Swiss-Prot
Match: ERF98_ARATH (Ethylene-responsive transcription factor ERF098 OS=Arabidopsis thaliana GN=ERF098 PE=2 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 2.432e-15
Identity = 39/69 (56.52%), Postives = 48/69 (69.57%), Query Frame = -2
Query:  468 QT*ESEEKHYRGVRRRPWGKYAAEIRDPTRRGVRVWLGTFDTXXXXXXXXXXXAFQLRGSKAILNFPLE 674
            Q+ + ++  +RGVRRRPWGK+AAEIRDP+R G R+WLGTF+T           AF LRG  AILNFP E
Sbjct:   11 QSQDDKQARFRGVRRRPWGKFAAEIRDPSRNGARLWLGTFETAEEAARAYDRAAFNLRGHLAILNFPNE 79          
BLAST of CX296424 vs. ExPASy Swiss-Prot
Match: ERF95_ARATH (Ethylene-responsive transcription factor ERF095 OS=Arabidopsis thaliana GN=ERF095 PE=2 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 5.417e-15
Identity = 39/65 (60.00%), Postives = 44/65 (67.69%), Query Frame = -2
Query:  468 SEEKHYRGVRRRPWGKYAAEIRDPTRRGVRVWLGTFDTXXXXXXXXXXXAFQLRGSKAILNFPLE 662
            + E  YRGVR+RPWGKYAAEIRD  R G RVWLGTF+T           AF +RG +AILNFP E
Sbjct:    9 TNEMKYRGVRKRPWGKYAAEIRDSARHGARVWLGTFNTAEDAARAYDRAAFGMRGQRAILNFPHE 73          
BLAST of CX296424 vs. ExPASy Swiss-Prot
Match: ERF80_ARATH (Ethylene-responsive transcription factor 9 OS=Arabidopsis thaliana GN=ERF9 PE=2 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 7.822e-14
Identity = 47/105 (44.76%), Postives = 57/105 (54.29%), Query Frame = -2
Query:  384 EEKHYRGVRRRPWGKYAAEIRDPTRRGVRVWLGTFDTXXXXXXXXXXXAFQLRGSKAILNFPL--------EAGKCDS-----NAAVARECDSSAEAGACETKRK 659
            +E H+RGVR+RPWG+YAAEIRDP ++  RVWLGTFDT           A + RGSKA  NFPL        + G+ DS         ARE        AC  +RK
Sbjct:   29 KEVHFRGVRKRPWGRYAAEIRDPGKK-TRVWLGTFDTAEEAARAYDTAAREFRGSKAKTNFPLPGESTTVNDGGENDSYVNRTTVTTAREMTRQRFPFACHRERK 132          
BLAST of CX296424 vs. ExPASy Swiss-Prot
Match: ERF73_ARATH (Ethylene-responsive transcription factor ERF073 OS=Arabidopsis thaliana GN=ERF073 PE=2 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 1.022e-13
Identity = 40/87 (45.98%), Postives = 57/87 (65.52%), Query Frame = -2
Query:  408 ESEEKHYRGVRRRPWGKYAAEIRDPTRRGVRVWLGTFDTXXXXXXXXXXXAFQLRGSKAILNFPLE-AGKCDSNAAVARECDSSAEA 665
            + +   Y+G+RRRPWG++AAEIRDP  +GVRVWLGTF+T           A ++RG+KA LNFP E +GK  + A   ++ + + EA
Sbjct:   19 KKQSSRYKGIRRRPWGRWAAEIRDPI-KGVRVWLGTFNTAEEAARAYDLEAKRIRGAKAKLNFPNESSGKRKAKAKTVQQVEENHEA 104          
BLAST of CX296424 vs. ExPASy Swiss-Prot
Match: ERF4_NICSY (Ethylene-responsive transcription factor 4 OS=Nicotiana sylvestris GN=ERF4 PE=2 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 1.743e-13
Identity = 42/85 (49.41%), Postives = 52/85 (61.18%), Query Frame = -2
Query:  405 EEKHYRGVRRRPWGKYAAEIRDPTRRGVRVWLGTFDTXXXXXXXXXXXAFQLRGSKAILNFPLEAGKCDSNAAVARECDSSAEAG 659
            +E HYRGVR+RPWG+YAAEIRDP ++  RVWLGTFDT           A + RG KA  NFPL +    ++ +   E  SS E G
Sbjct:   23 KEVHYRGVRKRPWGRYAAEIRDPGKKS-RVWLGTFDTAEEAAKAYDTAAREFRGPKAKTNFPLPSENQSTSHSSTME-SSSGETG 105          
BLAST of CX296424 vs. ExPASy Swiss-Prot
Match: EF112_ARATH (Ethylene-responsive transcription factor ERF112 OS=Arabidopsis thaliana GN=ERF112 PE=2 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 2.276e-13
Identity = 37/63 (58.73%), Postives = 44/63 (69.84%), Query Frame = -2
Query:  474 SEEKHYRGVRRRPWGKYAAEIRDPTRRGVRVWLGTFDTXXXXXXXXXXXAFQLRGSKAILNFP 662
            S +++YRGVR+RPWGK+AAEIRDP  +  RVWLGTFDT           AF+ RG KA LNFP
Sbjct:   65 SRQRNYRGVRQRPWGKWAAEIRDP-NKAARVWLGTFDTAEEAALAYDKAAFEFRGHKAKLNFP 126          
BLAST of CX296424 vs. ExPASy Swiss-Prot
Match: RAP23_ARATH (Ethylene-responsive transcription factor RAP2-3 OS=Arabidopsis thaliana GN=RAP2-3 PE=1 SV=2)

HSP 1 Score: 75.0998 bits (183), Expect = 3.882e-13
Identity = 37/58 (63.79%), Postives = 43/58 (74.14%), Query Frame = -2
Query:  474 YRGVRRRPWGKYAAEIRDPTRRGVRVWLGTFDTXXXXXXXXXXXAFQLRGSKAILNFP 647
            YRG+R+RPWGK+AAEIRDP R+GVRVWLGTF+T           A Q+RG KA LNFP
Sbjct:   79 YRGIRKRPWGKWAAEIRDP-RKGVRVWLGTFNTAEEAAMAYDVAAKQIRGDKAKLNFP 135          
BLAST of CX296424 vs. ExPASy Swiss-Prot
Match: ERF71_ARATH (Ethylene-responsive transcription factor ERF071 OS=Arabidopsis thaliana GN=ERF071 PE=2 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 5.070e-13
Identity = 44/100 (44.00%), Postives = 54/100 (54.00%), Query Frame = -2
Query:  348 YRGVRRRPWGKYAAEIRDPTRRGVRVWLGTFDTXXXXXXXXXXXAFQLRGSKAILNFPLEAGKCDSNAAVARECDSSAEAGACETKRKRDCESEEEERKA 647
            YRG+R+RPWGK+AAEIRDP+ +GVRVWLGTF T           A ++RG KA LNFP        N  V  E D+       E   +   ES  E+  A
Sbjct:   50 YRGIRQRPWGKWAAEIRDPS-KGVRVWLGTFKTADEAARAYDVAAIKIRGRKAKLNFP--------NTQVEEEADTKPGGNQNELISENQVESLSEDLMA 140          
BLAST of CX296424 vs. ExPASy Swiss-Prot
Match: CRF1_ARATH (Ethylene-responsive transcription factor CRF1 OS=Arabidopsis thaliana GN=CRF1 PE=2 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 5.070e-13
Identity = 38/60 (63.33%), Postives = 43/60 (71.67%), Query Frame = -2
Query:  474 KHYRGVRRRPWGKYAAEIRDPTRRGVRVWLGTFDTXXXXXXXXXXXAFQLRGSKAILNFP 653
            + +RGVR+RPWGK+AAEIRDP+RR VRVWLGTFDT           A QLRG  A LNFP
Sbjct:   85 RKFRGVRQRPWGKWAAEIRDPSRR-VRVWLGTFDTAEEAAIVYDNAAIQLRGPNAELNFP 143          
The following BLAST results are available for this feature:
BLAST of CX296424 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 53
Match NameE-valueIdentityDescription
ERF93_ARATH1.862e-1560.94Ethylene-responsive transcription factor 15 OS=Ara... [more]
ERF98_ARATH2.432e-1556.52Ethylene-responsive transcription factor ERF098 OS... [more]
ERF95_ARATH5.417e-1560.00Ethylene-responsive transcription factor ERF095 OS... [more]
ERF80_ARATH7.822e-1444.76Ethylene-responsive transcription factor 9 OS=Arab... [more]
ERF73_ARATH1.022e-1345.98Ethylene-responsive transcription factor ERF073 OS... [more]
ERF4_NICSY1.743e-1349.41Ethylene-responsive transcription factor 4 OS=Nico... [more]
EF112_ARATH2.276e-1358.73Ethylene-responsive transcription factor ERF112 OS... [more]
RAP23_ARATH3.882e-1363.79Ethylene-responsive transcription factor RAP2-3 OS... [more]
ERF71_ARATH5.070e-1344.00Ethylene-responsive transcription factor ERF071 OS... [more]
CRF1_ARATH5.070e-1363.33Ethylene-responsive transcription factor CRF1 OS=A... [more]

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Properties
Property NameValue
Genbank descriptionC05140G04SK FerrChloL1 Citrus clementina cDNA clone C05140G04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX296424 ID=CX296424; Name=CX296424; organism=Citrus clementina; type=EST; length=687bp
AGGTTTTTTTTTTTTTTTTTTTTTTTAGAATAAAATCAATCAACTCATTT
TTTAAGCTCCAAGAATTAATCAAAAAGTAATTTTATTTTTCAAAAAGATT
TATATGTGCATGTGCAATCCGAAAGCTCCACGTCAGACATAATACCCGCC
ACGCCAATTATACTACTCAAAGTCAAAAGTCAAAGAACCATCAACGGTTG
AGGCGATAACGGCGACAGTAGAGGGGCGTTGAATATCCCTTTCACACCAC
AGTCCCAGTCCAAATGCAAGTCCCAAAACGCCGCGCAACTCGCCGGCGTC
AAAGGAAATTCATTAACTGTATCCGCAGACTCCGTTTTCACCACCTTGGC
TTTTCTCTCCTCTTCTTCGCTTTCACAGTCCCTCTTCCGTTTCGTTTCAC
ACGCGCCAGCCTCGGCGCTCGAGTCACACTCTCTAGCCACCGCAGCGTTT
GAGTCGCACTTGCCGGCTTCAAGAGGAAAGTTGAGGATCGCTTTCGAGCC
GCGCAGCTGGAAAGCGGCACGGTCGTACGCCCTAGCTGCTTCAATGGCCG
TGTCAAATGTCCCCAGCCAGACACGTACGCCTCTCCGGGTAGGATCTCGG
ATCTCGGCCGCGTACTTTCCCCACGGCCTCCGTCGAACTCCTCTGTAATG
CTTTTCTTCCGACTCTCAGGTTTGGCCTTGCTTTTCC
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