CX296424

Overview
NameCX296424
Unique NameCX296424
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length687
Libraries
Library NameType
FerrChloL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15331 contig Ccv1_Contig15331:498..1185. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX296424 vs. ExPASy Swiss-Prot
Match: ERF77_ARATH (Ethylene-responsive transcription factor 10 OS=Arabidopsis thaliana GN=ERF10 PE=2 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 6.622e-13
Identity = 37/65 (56.92%), Postives = 45/65 (69.23%), Query Frame = -2
Query:  471 ESEEKHYRGVRRRPWGKYAAEIRDPTRRGVRVWLGTFDTXXXXXXXXXXXAFQLRGSKAILNFPL 665
            +S+E  YRGVRRRPWG+YAAEIRDP ++  RVWLG+F+T           A + RGSKA  NFPL
Sbjct:   47 KSKEVRYRGVRRRPWGRYAAEIRDPVKK-KRVWLGSFNTGEEAARAYDSAAIRFRGSKATTNFPL 110          
BLAST of CX296424 vs. ExPASy Swiss-Prot
Match: EF115_ARATH (Ethylene-responsive transcription factor ERF115 OS=Arabidopsis thaliana GN=ERF115 PE=2 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 8.648e-13
Identity = 36/64 (56.25%), Postives = 45/64 (70.31%), Query Frame = -2
Query:  465 EKHYRGVRRRPWGKYAAEIRDPTRRGVRVWLGTFDTXXXXXXXXXXXAFQLRGSKAILNFPLEA 656
            ++HYRGVR+RPWGK+AAEIRDP ++  RVWLGTF+T           A + +GSKA LNFP  A
Sbjct:   89 KRHYRGVRQRPWGKWAAEIRDP-QKAARVWLGTFETAEAAALAYDNAALKFKGSKAKLNFPERA 151          
BLAST of CX296424 vs. ExPASy Swiss-Prot
Match: EF114_ARATH (Ethylene-responsive transcription factor ERF114 OS=Arabidopsis thaliana GN=ERF114 PE=2 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.129e-12
Identity = 35/60 (58.33%), Postives = 43/60 (71.67%), Query Frame = -2
Query:  474 KHYRGVRRRPWGKYAAEIRDPTRRGVRVWLGTFDTXXXXXXXXXXXAFQLRGSKAILNFP 653
            +HYRGVR+RPWGK+AAEIRDP ++  RVWLGTF+T           A + +GSKA LNFP
Sbjct:   88 RHYRGVRQRPWGKWAAEIRDP-KKAARVWLGTFETAESAALAYDEAALKFKGSKAKLNFP 146          
BLAST of CX296424 vs. ExPASy Swiss-Prot
Match: RA212_ARATH (Ethylene-responsive transcription factor RAP2-12 OS=Arabidopsis thaliana GN=RAP2-12 PE=2 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.475e-12
Identity = 37/69 (53.62%), Postives = 46/69 (66.67%), Query Frame = -2
Query:  450 EKHYRGVRRRPWGKYAAEIRDPTRRGVRVWLGTFDTXXXXXXXXXXXAFQLRGSKAILNFPLEAGKCDS 656
            +  YRG+R+RPWGK+AAEIRDP R G R+WLGTF T           A ++RGSKA +NFP E  K +S
Sbjct:  122 KNQYRGIRQRPWGKWAAEIRDP-REGARIWLGTFKTAEEAARAYDAAARRIRGSKAKVNFPEENMKANS 189          
BLAST of CX296424 vs. ExPASy Swiss-Prot
Match: PTI6_SOLLC (Pathogenesis-related genes transcriptional activator PTI6 OS=Solanum lycopersicum GN=PTI6 PE=2 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.475e-12
Identity = 38/86 (44.19%), Postives = 51/86 (59.30%), Query Frame = -2
Query:  405 SEEKHYRGVRRRPWGKYAAEIRDPTRRGVRVWLGTFDTXXXXXXXXXXXAFQLRGSKAILNFPLEAGKCDSNAAVARECDSSAEAG 662
            +  K +RGVR+RPWG++AAEIRDPT RG RVWLGT+DT           A +L+G  A+ NFP+      +      E +S A+ G
Sbjct:   93 TRRKKFRGVRQRPWGRWAAEIRDPT-RGKRVWLGTYDTPEEAAVVYDKAAVKLKGPDAVTNFPVSTTAEVTVTVTETETESVADGG 177          
BLAST of CX296424 vs. ExPASy Swiss-Prot
Match: EF110_ARATH (Ethylene-responsive transcription factor ERF110 OS=Arabidopsis thaliana GN=ERF110 PE=2 SV=2)

HSP 1 Score: 73.1738 bits (178), Expect = 1.475e-12
Identity = 36/62 (58.06%), Postives = 43/62 (69.35%), Query Frame = -2
Query:  474 EEKHYRGVRRRPWGKYAAEIRDPTRRGVRVWLGTFDTXXXXXXXXXXXAFQLRGSKAILNFP 659
            +++ YRGVR+RPWGK+AAEIRDP  R  RVWLGTFDT           A + RG+KA LNFP
Sbjct:   73 KKRRYRGVRQRPWGKWAAEIRDP-HRAARVWLGTFDTAEAAARAYDEAALRFRGNKAKLNFP 133          
BLAST of CX296424 vs. ExPASy Swiss-Prot
Match: RAP26_ARATH (Ethylene-responsive transcription factor RAP2-6 OS=Arabidopsis thaliana GN=RAP2-6 PE=2 SV=2)

HSP 1 Score: 72.7886 bits (177), Expect = 1.927e-12
Identity = 37/64 (57.81%), Postives = 42/64 (65.62%), Query Frame = -2
Query:  462 KHYRGVRRRPWGKYAAEIRDPTRRGVRVWLGTFDTXXXXXXXXXXXAFQLRGSKAILNFPLEAG 653
            K YRGVR+RPWGK+AAEIRDP  +  RVWLGTF+T           A + RGSKA LNFP   G
Sbjct:   59 KKYRGVRQRPWGKWAAEIRDP-HKATRVWLGTFETAEAAARAYDAAALRFRGSKAKLNFPENVG 121          
BLAST of CX296424 vs. ExPASy Swiss-Prot
Match: ERF4_TOBAC (Ethylene-responsive transcription factor 4 OS=Nicotiana tabacum GN=ERF4 PE=1 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 1.927e-12
Identity = 36/62 (58.06%), Postives = 42/62 (67.74%), Query Frame = -2
Query:  474 EEKHYRGVRRRPWGKYAAEIRDPTRRGVRVWLGTFDTXXXXXXXXXXXAFQLRGSKAILNFP 659
            +E HYRGVR+RPWG+YAAEIRDP ++  RVWLGTFDT           A + RG KA  NFP
Sbjct:   23 KEVHYRGVRKRPWGRYAAEIRDPGKKS-RVWLGTFDTAEEAAKAYDTAAREFRGPKAKTNFP 83          
BLAST of CX296424 vs. ExPASy Swiss-Prot
Match: EF113_ARATH (Ethylene-responsive transcription factor ERF113 OS=Arabidopsis thaliana GN=ERF113 PE=2 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 1.927e-12
Identity = 34/64 (53.12%), Postives = 44/64 (68.75%), Query Frame = -2
Query:  474 ESEEKHYRGVRRRPWGKYAAEIRDPTRRGVRVWLGTFDTXXXXXXXXXXXAFQLRGSKAILNFP 665
            +   +HYRGVR+RPWGK+AAEIRDP ++  RVWLGTF+T           A + +G+KA LNFP
Sbjct:   33 QPRRRHYRGVRQRPWGKWAAEIRDP-KKAARVWLGTFETAEEAALAYDRAALKFKGTKAKLNFP 95          
BLAST of CX296424 vs. ExPASy Swiss-Prot
Match: ERF91_ARATH (Ethylene-responsive transcription factor ERF091 OS=Arabidopsis thaliana GN=ERF091 PE=2 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 3.286e-12
Identity = 37/63 (58.73%), Postives = 43/63 (68.25%), Query Frame = -2
Query:  468 KHYRGVRRRPWGKYAAEIRDPTRRGVRVWLGTFDTXXXXXXXXXXXAFQLRGS-KAILNFPLE 653
            + YRGVR+RPWGK+AAEIRD TR GVRVWLGTF T           A ++RG+ KA  NF LE
Sbjct:  108 RKYRGVRKRPWGKFAAEIRDSTRNGVRVWLGTFQTAEEAAMAYDKAAVRIRGTQKAHTNFQLE 170          
The following BLAST results are available for this feature:
BLAST of CX296424 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 53
Match NameE-valueIdentityDescription
ERF77_ARATH6.622e-1356.92Ethylene-responsive transcription factor 10 OS=Ara... [more]
EF115_ARATH8.648e-1356.25Ethylene-responsive transcription factor ERF115 OS... [more]
EF114_ARATH1.129e-1258.33Ethylene-responsive transcription factor ERF114 OS... [more]
RA212_ARATH1.475e-1253.62Ethylene-responsive transcription factor RAP2-12 O... [more]
PTI6_SOLLC1.475e-1244.19Pathogenesis-related genes transcriptional activat... [more]
EF110_ARATH1.475e-1258.06Ethylene-responsive transcription factor ERF110 OS... [more]
RAP26_ARATH1.927e-1257.81Ethylene-responsive transcription factor RAP2-6 OS... [more]
ERF4_TOBAC1.927e-1258.06Ethylene-responsive transcription factor 4 OS=Nico... [more]
EF113_ARATH1.927e-1253.13Ethylene-responsive transcription factor ERF113 OS... [more]
ERF91_ARATH3.286e-1258.73Ethylene-responsive transcription factor ERF091 OS... [more]

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Properties
Property NameValue
Genbank descriptionC05140G04SK FerrChloL1 Citrus clementina cDNA clone C05140G04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX296424 ID=CX296424; Name=CX296424; organism=Citrus clementina; type=EST; length=687bp
AGGTTTTTTTTTTTTTTTTTTTTTTTAGAATAAAATCAATCAACTCATTT
TTTAAGCTCCAAGAATTAATCAAAAAGTAATTTTATTTTTCAAAAAGATT
TATATGTGCATGTGCAATCCGAAAGCTCCACGTCAGACATAATACCCGCC
ACGCCAATTATACTACTCAAAGTCAAAAGTCAAAGAACCATCAACGGTTG
AGGCGATAACGGCGACAGTAGAGGGGCGTTGAATATCCCTTTCACACCAC
AGTCCCAGTCCAAATGCAAGTCCCAAAACGCCGCGCAACTCGCCGGCGTC
AAAGGAAATTCATTAACTGTATCCGCAGACTCCGTTTTCACCACCTTGGC
TTTTCTCTCCTCTTCTTCGCTTTCACAGTCCCTCTTCCGTTTCGTTTCAC
ACGCGCCAGCCTCGGCGCTCGAGTCACACTCTCTAGCCACCGCAGCGTTT
GAGTCGCACTTGCCGGCTTCAAGAGGAAAGTTGAGGATCGCTTTCGAGCC
GCGCAGCTGGAAAGCGGCACGGTCGTACGCCCTAGCTGCTTCAATGGCCG
TGTCAAATGTCCCCAGCCAGACACGTACGCCTCTCCGGGTAGGATCTCGG
ATCTCGGCCGCGTACTTTCCCCACGGCCTCCGTCGAACTCCTCTGTAATG
CTTTTCTTCCGACTCTCAGGTTTGGCCTTGCTTTTCC
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