CX296424

Overview
NameCX296424
Unique NameCX296424
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length687
Libraries
Library NameType
FerrChloL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX296424 vs. ExPASy Swiss-Prot
Match: ERF81_ARATH (Ethylene-responsive transcription factor 12 OS=Arabidopsis thaliana GN=ERF12 PE=2 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 3.286e-12
Identity = 37/63 (58.73%), Postives = 42/63 (66.67%), Query Frame = -2
Query:  474 SEEKHYRGVRRRPWGKYAAEIRDPTRRGVRVWLGTFDTXXXXXXXXXXXAFQLRGSKAILNFP 662
            + E HYRGVR+RPWG+YAAEIRDP ++  RVWLGTFDT           A  LRG KA  NFP
Sbjct:    7 AREVHYRGVRKRPWGRYAAEIRDPWKK-TRVWLGTFDTPEEAALAYDGAARFLRGIKAKTNFP 68          
BLAST of CX296424 vs. ExPASy Swiss-Prot
Match: EF109_ARATH (Ethylene-responsive transcription factor ERF109 OS=Arabidopsis thaliana GN=ERF109 PE=2 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 4.292e-12
Identity = 42/102 (41.18%), Postives = 57/102 (55.88%), Query Frame = -2
Query:  360 ESEEKHYRGVRRRPWGKYAAEIRDPTRRGVRVWLGTFDTXXXXXXXXXXXAFQLRGSKAILNFPLEAGKCDSNAAVARECDSSAEAGACETKRKRDCESEEE 665
            ++++  YRGVR+RPWGK+AAEIRDP +R  RVWLGTF+T           A   RG +A LNFP        ++ VA + D  A+A A  +    D    E+
Sbjct:  130 KNKKNGYRGVRQRPWGKFAAEIRDP-KRATRVWLGTFETAEDAARAYDRAAIGFRGPRAKLNFPFVDYTSSVSSPVAAD-DIGAKASASASVSATDSVEAEQ 229          
BLAST of CX296424 vs. ExPASy Swiss-Prot
Match: ERF76_ARATH (Ethylene-responsive transcription factor 11 OS=Arabidopsis thaliana GN=ERF11 PE=2 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 5.606e-12
Identity = 36/67 (53.73%), Postives = 43/67 (64.18%), Query Frame = -2
Query:  474 QT*ESEEKHYRGVRRRPWGKYAAEIRDPTRRGVRVWLGTFDTXXXXXXXXXXXAFQLRGSKAILNFP 674
            +T E     YRGVR+RPWG+YAAEIRDP ++  RVWLGTFDT           A + RG+KA  NFP
Sbjct:   11 KTNEGNGVRYRGVRKRPWGRYAAEIRDPFKKS-RVWLGTFDTPEEAARAYDKRAIEFRGAKAKTNFP 76          
BLAST of CX296424 vs. ExPASy Swiss-Prot
Match: RAP22_ARATH (Ethylene-responsive transcription factor RAP2-2 OS=Arabidopsis thaliana GN=RAP2-2 PE=2 SV=2)

HSP 1 Score: 70.8626 bits (172), Expect = 7.321e-12
Identity = 35/63 (55.56%), Postives = 44/63 (69.84%), Query Frame = -2
Query:  468 EKHYRGVRRRPWGKYAAEIRDPTRRGVRVWLGTFDTXXXXXXXXXXXAFQLRGSKAILNFPLE 656
            +  YRG+R+RPWGK+AAEIRDP R+G R WLGTFDT           A ++RG+KA +NFP E
Sbjct:  125 KNQYRGIRQRPWGKWAAEIRDP-RKGSREWLGTFDTAEEAARAYDAAARRIRGTKAKVNFPEE 186          
BLAST of CX296424 vs. ExPASy Swiss-Prot
Match: ABR1_ARATH (Ethylene-responsive transcription factor ABR1 OS=Arabidopsis thaliana GN=ABR1 PE=2 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 7.321e-12
Identity = 46/126 (36.51%), Postives = 60/126 (47.62%), Query Frame = -2
Query:  288 ESEEKHYRGVRRRPWGKYAAEIRDPTRRGVRVWLGTFDTXXXXXXXXXXXAFQLRGSKAILNFPLEAGKCDSNAAVARECDSSAEAGACETKRKRDCESEEEERKAKVVKTESADTVNEFPLTPAS 665
            +   + YRGVR+RPWGK+AAEIRDP  +  RVWLGTFD            A + RG+KA LNFP        N  + R   + A+    +T  +R  +S             S  T    P+ PAS
Sbjct:  179 DQPRRRYRGVRQRPWGKWAAEIRDPF-KAARVWLGTFDNAESAARAYDEAALRFRGNKAKLNFP-------ENVKLVRPASTEAQP-VHQTAAQRPTQSR-----------NSGSTTTLLPIRPAS 284          
BLAST of CX296424 vs. ExPASy Swiss-Prot
Match: ERF1_ORYSJ (Ethylene-responsive transcription factor 1 OS=Oryza sativa subsp. japonica GN=EREBP1 PE=1 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.249e-11
Identity = 39/85 (45.88%), Postives = 53/85 (62.35%), Query Frame = -2
Query:  411 EKHYRGVRRRPWGKYAAEIRDPTRRGVRVWLGTFDTXXXXXXXXXXXAFQLRGSKAILNF---PLEAGKCDSNAAVARECDSSAE 656
            +  +RG+R+RPWGK+AAEIRDP R+GVRVWLGTF++           A ++RG KA +NF   P  A K  + +  A+   SS E
Sbjct:  117 KNQFRGIRQRPWGKWAAEIRDP-RKGVRVWLGTFNSAEEAARAYDAEARRIRGKKAKVNFPEAPTTAQKRRAGSTTAKAPKSSVE 200          
BLAST of CX296424 vs. ExPASy Swiss-Prot
Match: ERF83_ARATH (Ethylene-responsive transcription factor 7 OS=Arabidopsis thaliana GN=ERF7 PE=1 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.631e-11
Identity = 34/64 (53.12%), Postives = 43/64 (67.19%), Query Frame = -2
Query:  468 EEKHYRGVRRRPWGKYAAEIRDPTRRGVRVWLGTFDTXXXXXXXXXXXAFQLRGSKAILNFPLE 659
            +E  YRGVR+RPWG++AAEIRDP ++  RVWLGTFD+           A  LRG KA  NFP++
Sbjct:   23 KEPRYRGVRKRPWGRFAAEIRDPLKKS-RVWLGTFDSAVDAARAYDTAARNLRGPKAKTNFPID 85          
BLAST of CX296424 vs. ExPASy Swiss-Prot
Match: ERF78_ARATH (Ethylene-responsive transcription factor 4 OS=Arabidopsis thaliana GN=ERF4 PE=1 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.631e-11
Identity = 35/63 (55.56%), Postives = 42/63 (66.67%), Query Frame = -2
Query:  474 SEEKHYRGVRRRPWGKYAAEIRDPTRRGVRVWLGTFDTXXXXXXXXXXXAFQLRGSKAILNFP 662
            ++E  YRGVR+RPWG+YAAEIRDP ++  RVWLGTFDT           A   RG+KA  NFP
Sbjct:   20 AKEIRYRGVRKRPWGRYAAEIRDPGKK-TRVWLGTFDTAEEAARAYDTAARDFRGAKAKTNFP 81          
BLAST of CX296424 vs. ExPASy Swiss-Prot
Match: ERF79_ARATH (Ethylene-responsive transcription factor 8 OS=Arabidopsis thaliana GN=ERF8 PE=2 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 2.782e-11
Identity = 36/83 (43.37%), Postives = 49/83 (59.04%), Query Frame = -2
Query:  414 SEEKHYRGVRRRPWGKYAAEIRDPTRRGVRVWLGTFDTXXXXXXXXXXXAFQLRGSKAILNFPLEAGKCDSNAAVARECDSSA 662
            ++E  YRGVR+RPWG+YAAEIRDP ++  RVWLGTFDT           A   RG KA  NF +  G   + ++   +  ++A
Sbjct:   26 AKEIRYRGVRKRPWGRYAAEIRDPVKK-TRVWLGTFDTAQQAARAYDAAARDFRGVKAKTNFGVIVGSSPTQSSTVVDSPTAA 107          
BLAST of CX296424 vs. ExPASy Swiss-Prot
Match: CRF2_ARATH (Ethylene-responsive transcription factor CRF2 OS=Arabidopsis thaliana GN=CRF2 PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 3.633e-11
Identity = 34/60 (56.67%), Postives = 42/60 (70.00%), Query Frame = -2
Query:  477 EKHYRGVRRRPWGKYAAEIRDPTRRGVRVWLGTFDTXXXXXXXXXXXAFQLRGSKAILNF 656
            EK +RGVR+RPWGK+AAEIRDP +R VR+WLGT++T           A QLRG  A+ NF
Sbjct:  119 EKKFRGVRQRPWGKWAAEIRDPLKR-VRLWLGTYNTAEEAAMVYDNAAIQLRGPDALTNF 177          
The following BLAST results are available for this feature:
BLAST of CX296424 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 53
Match NameE-valueIdentityDescription
ERF81_ARATH3.286e-1258.73Ethylene-responsive transcription factor 12 OS=Ara... [more]
EF109_ARATH4.292e-1241.18Ethylene-responsive transcription factor ERF109 OS... [more]
ERF76_ARATH5.606e-1253.73Ethylene-responsive transcription factor 11 OS=Ara... [more]
RAP22_ARATH7.321e-1255.56Ethylene-responsive transcription factor RAP2-2 OS... [more]
ABR1_ARATH7.321e-1236.51Ethylene-responsive transcription factor ABR1 OS=A... [more]
ERF1_ORYSJ1.249e-1145.88Ethylene-responsive transcription factor 1 OS=Oryz... [more]
ERF83_ARATH1.631e-1153.13Ethylene-responsive transcription factor 7 OS=Arab... [more]
ERF78_ARATH1.631e-1155.56Ethylene-responsive transcription factor 4 OS=Arab... [more]
ERF79_ARATH2.782e-1143.37Ethylene-responsive transcription factor 8 OS=Arab... [more]
CRF2_ARATH3.633e-1156.67Ethylene-responsive transcription factor CRF2 OS=A... [more]

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Properties
Property NameValue
Genbank descriptionC05140G04SK FerrChloL1 Citrus clementina cDNA clone C05140G04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX296424 ID=CX296424; Name=CX296424; organism=Citrus clementina; type=EST; length=687bp
AGGTTTTTTTTTTTTTTTTTTTTTTTAGAATAAAATCAATCAACTCATTT
TTTAAGCTCCAAGAATTAATCAAAAAGTAATTTTATTTTTCAAAAAGATT
TATATGTGCATGTGCAATCCGAAAGCTCCACGTCAGACATAATACCCGCC
ACGCCAATTATACTACTCAAAGTCAAAAGTCAAAGAACCATCAACGGTTG
AGGCGATAACGGCGACAGTAGAGGGGCGTTGAATATCCCTTTCACACCAC
AGTCCCAGTCCAAATGCAAGTCCCAAAACGCCGCGCAACTCGCCGGCGTC
AAAGGAAATTCATTAACTGTATCCGCAGACTCCGTTTTCACCACCTTGGC
TTTTCTCTCCTCTTCTTCGCTTTCACAGTCCCTCTTCCGTTTCGTTTCAC
ACGCGCCAGCCTCGGCGCTCGAGTCACACTCTCTAGCCACCGCAGCGTTT
GAGTCGCACTTGCCGGCTTCAAGAGGAAAGTTGAGGATCGCTTTCGAGCC
GCGCAGCTGGAAAGCGGCACGGTCGTACGCCCTAGCTGCTTCAATGGCCG
TGTCAAATGTCCCCAGCCAGACACGTACGCCTCTCCGGGTAGGATCTCGG
ATCTCGGCCGCGTACTTTCCCCACGGCCTCCGTCGAACTCCTCTGTAATG
CTTTTCTTCCGACTCTCAGGTTTGGCCTTGCTTTTCC
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