CX296424

Overview
NameCX296424
Unique NameCX296424
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length687
Libraries
Library NameType
FerrChloL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX296424 vs. ExPASy Swiss-Prot
Match: ERF3_TOBAC (Ethylene-responsive transcription factor 3 OS=Nicotiana tabacum GN=ERF3 PE=2 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 4.745e-11
Identity = 35/64 (54.69%), Postives = 43/64 (67.19%), Query Frame = -2
Query:  471 SEEKHYRGVRRRPWGKYAAEIRDPTRRGVRVWLGTFDTXXXXXXXXXXXAFQLRGSKAILNFPL 662
            S+E  +RGVR+RPWG++AAEIRDP ++  RVWLGTFD+           A  LRG KA  NFPL
Sbjct:   23 SKEIRFRGVRKRPWGRFAAEIRDPWKK-TRVWLGTFDSAEDAARAYDAAARALRGPKAKTNFPL 85          
BLAST of CX296424 vs. ExPASy Swiss-Prot
Match: ERF82_ARATH (Ethylene-responsive transcription factor 3 OS=Arabidopsis thaliana GN=ERF3 PE=1 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 8.094e-11
Identity = 33/65 (50.77%), Postives = 44/65 (67.69%), Query Frame = -2
Query:  465 EEKHYRGVRRRPWGKYAAEIRDPTRRGVRVWLGTFDTXXXXXXXXXXXAFQLRGSKAILNFPLEA 659
            +E  +RGVR+RPWG++AAEIRDP ++  RVWLGTFD+           A  LRG KA  NFP+++
Sbjct:   24 KEIRFRGVRKRPWGRFAAEIRDPWKK-ARVWLGTFDSAEEAARAYDSAARNLRGPKAKTNFPIDS 87          
BLAST of CX296424 vs. ExPASy Swiss-Prot
Match: CRF6_ARATH (Ethylene-responsive transcription factor CRF6 OS=Arabidopsis thaliana GN=CRF6 PE=2 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 8.094e-11
Identity = 52/155 (33.55%), Postives = 69/155 (44.52%), Query Frame = -2
Query:  261 KHYRGVRRRPWGKYAAEIRDPTRRGVRVWLGTFDTXXXXXXXXXXXAFQLRGSKAILNF---PLEAGKCDSNAAVARECDSSAEAGAC--------------ETKRKRDCESEEEERKAKVVKTESADTV-----NEFPLTPASCA--AFWDLHL 653
            K YRGVR+RPWGK+AAEIRDP+ R  R+WLGTF T           A  L+G KA+ NF   P      D     A  CD   ++                 ET+ + +      ERK+ V+K E   +      + + L   S A   FWD  +
Sbjct:  103 KKYRGVRQRPWGKFAAEIRDPSSR-TRIWLGTFVTAEEAAIAYDRAAIHLKGPKALTNFLTPPTPTPVIDLQTVSA--CDYGRDSRQSLHSPTSVLRFNVNEETEHEIEAIELSPERKSTVIKEEEESSAGLVFPDPYLLPDLSLAGECFWDTEI 254          
The following BLAST results are available for this feature:
BLAST of CX296424 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 53
Match NameE-valueIdentityDescription
ERF3_TOBAC4.745e-1154.69Ethylene-responsive transcription factor 3 OS=Nico... [more]
ERF82_ARATH8.094e-1150.77Ethylene-responsive transcription factor 3 OS=Arab... [more]
CRF6_ARATH8.094e-1133.55Ethylene-responsive transcription factor CRF6 OS=A... [more]

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Properties
Property NameValue
Genbank descriptionC05140G04SK FerrChloL1 Citrus clementina cDNA clone C05140G04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX296424 ID=CX296424; Name=CX296424; organism=Citrus clementina; type=EST; length=687bp
AGGTTTTTTTTTTTTTTTTTTTTTTTAGAATAAAATCAATCAACTCATTT
TTTAAGCTCCAAGAATTAATCAAAAAGTAATTTTATTTTTCAAAAAGATT
TATATGTGCATGTGCAATCCGAAAGCTCCACGTCAGACATAATACCCGCC
ACGCCAATTATACTACTCAAAGTCAAAAGTCAAAGAACCATCAACGGTTG
AGGCGATAACGGCGACAGTAGAGGGGCGTTGAATATCCCTTTCACACCAC
AGTCCCAGTCCAAATGCAAGTCCCAAAACGCCGCGCAACTCGCCGGCGTC
AAAGGAAATTCATTAACTGTATCCGCAGACTCCGTTTTCACCACCTTGGC
TTTTCTCTCCTCTTCTTCGCTTTCACAGTCCCTCTTCCGTTTCGTTTCAC
ACGCGCCAGCCTCGGCGCTCGAGTCACACTCTCTAGCCACCGCAGCGTTT
GAGTCGCACTTGCCGGCTTCAAGAGGAAAGTTGAGGATCGCTTTCGAGCC
GCGCAGCTGGAAAGCGGCACGGTCGTACGCCCTAGCTGCTTCAATGGCCG
TGTCAAATGTCCCCAGCCAGACACGTACGCCTCTCCGGGTAGGATCTCGG
ATCTCGGCCGCGTACTTTCCCCACGGCCTCCGTCGAACTCCTCTGTAATG
CTTTTCTTCCGACTCTCAGGTTTGGCCTTGCTTTTCC
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