CX296430

Overview
NameCX296430
Unique NameCX296430
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length104
Libraries
Library NameType
FerrChloL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15290 contig Ccv1_Contig15290:113..216. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CX296430 vs. ExPASy Swiss-Prot
Match: UBIQ_ASPOF (Ubiquitin OS=Asparagus officinalis PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 4.064e-12
Identity = 34/34 (100.00%), Postives = 34/34 (100.00%), Query Frame = 1 
Query:    1 LEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGK 102
            LEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGK
Sbjct:   15 LEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGK 48
[Close]
BLAST of CX296430 vs. ExPASy Swiss-Prot
Match: UBIQ_ARATH (Ubiquitin OS=Arabidopsis thaliana GN=UBQ1 PE=1 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 4.064e-12
Identity = 34/34 (100.00%), Postives = 34/34 (100.00%), Query Frame = 1 
Query:    1 LEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGK 102
            LEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGK
Sbjct:   15 LEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGK 48
[Close]
BLAST of CX296430 vs. ExPASy Swiss-Prot
Match: UBIQ_YEAST (Ubiquitin OS=Saccharomyces cerevisiae GN=UBI1 PE=1 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 9.054e-12
Identity = 33/34 (97.06%), Postives = 34/34 (100.00%), Query Frame = 1 
Query:    1 LEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGK 102
            LEVESSDTIDNVK+KIQDKEGIPPDQQRLIFAGK
Sbjct:   15 LEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGK 48
[Close]
BLAST of CX296430 vs. ExPASy Swiss-Prot
Match: UBIQ_SCHPO (Ubiquitin OS=Schizosaccharomyces pombe GN=ubi1 PE=1 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 9.054e-12
Identity = 33/34 (97.06%), Postives = 34/34 (100.00%), Query Frame = 1 
Query:    1 LEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGK 102
            LEVESSDTIDNVK+KIQDKEGIPPDQQRLIFAGK
Sbjct:   15 LEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGK 48
[Close]
BLAST of CX296430 vs. ExPASy Swiss-Prot
Match: UBIQ_KLULA (Ubiquitin OS=Kluyveromyces lactis GN=ubi3 PE=1 SV=2)

HSP 1 Score: 68.9366 bits (167), Expect = 9.054e-12
Identity = 33/34 (97.06%), Postives = 34/34 (100.00%), Query Frame = 1 
Query:    1 LEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGK 102
            LEVESSDTIDNVK+KIQDKEGIPPDQQRLIFAGK
Sbjct:   15 LEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGK 48
[Close]
BLAST of CX296430 vs. ExPASy Swiss-Prot
Match: UBIQ_CRYNE (Ubiquitin OS=Cryptococcus neoformans GN=UBI1 PE=1 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 9.054e-12
Identity = 33/34 (97.06%), Postives = 34/34 (100.00%), Query Frame = 1 
Query:    1 LEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGK 102
            LEVESSDTIDNVK+KIQDKEGIPPDQQRLIFAGK
Sbjct:   15 LEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGK 48
[Close]
BLAST of CX296430 vs. ExPASy Swiss-Prot
Match: UBIQ_CANAL (Ubiquitin OS=Candida albicans GN=UBI1 PE=1 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 9.054e-12
Identity = 33/34 (97.06%), Postives = 34/34 (100.00%), Query Frame = 1 
Query:    1 LEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGK 102
            LEVESSDTIDNVK+KIQDKEGIPPDQQRLIFAGK
Sbjct:   15 LEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGK 48
[Close]
BLAST of CX296430 vs. ExPASy Swiss-Prot
Match: UBIQ_TRYCR (Ubiquitin OS=Trypanosoma cruzi PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 1.183e-11
Identity = 33/34 (97.06%), Postives = 34/34 (100.00%), Query Frame = 1 
Query:    1 LEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGK 102
            LEVESSDTI+NVKAKIQDKEGIPPDQQRLIFAGK
Sbjct:   15 LEVESSDTIENVKAKIQDKEGIPPDQQRLIFAGK 48
[Close]
BLAST of CX296430 vs. ExPASy Swiss-Prot
Match: UBIQ_CHLRE (Ubiquitin OS=Chlamydomonas reinhardtii GN=UBI1 PE=1 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 1.183e-11
Identity = 33/34 (97.06%), Postives = 34/34 (100.00%), Query Frame = 1 
Query:    1 LEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGK 102
            LEVESSDTI+NVKAKIQDKEGIPPDQQRLIFAGK
Sbjct:   15 LEVESSDTIENVKAKIQDKEGIPPDQQRLIFAGK 48
[Close]
BLAST of CX296430 vs. ExPASy Swiss-Prot
Match: UBIQ_NEUCR (Ubiquitin OS=Neurospora crassa GN=ubi-1 PE=1 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 1.544e-11
Identity = 33/34 (97.06%), Postives = 33/34 (97.06%), Query Frame = 1 
Query:    1 LEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGK 102
            LEVESSDTIDNVK KIQDKEGIPPDQQRLIFAGK
Sbjct:   15 LEVESSDTIDNVKQKIQDKEGIPPDQQRLIFAGK 48
The following BLAST results are available for this feature:
BLAST of CX296430 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 67
Match NameE-valueIdentityDescription
UBIQ_ASPOF4.064e-12100.00Ubiquitin OS=Asparagus officinalis PE=3 SV=1[more]
UBIQ_ARATH4.064e-12100.00Ubiquitin OS=Arabidopsis thaliana GN=UBQ1 PE=1 SV=... [more]
UBIQ_YEAST9.054e-1297.06Ubiquitin OS=Saccharomyces cerevisiae GN=UBI1 PE=1... [more]
UBIQ_SCHPO9.054e-1297.06Ubiquitin OS=Schizosaccharomyces pombe GN=ubi1 PE=... [more]
UBIQ_KLULA9.054e-1297.06Ubiquitin OS=Kluyveromyces lactis GN=ubi3 PE=1 SV=... [more]
UBIQ_CRYNE9.054e-1297.06Ubiquitin OS=Cryptococcus neoformans GN=UBI1 PE=1 ... [more]
UBIQ_CANAL9.054e-1297.06Ubiquitin OS=Candida albicans GN=UBI1 PE=1 SV=1[more]
UBIQ_TRYCR1.183e-1197.06Ubiquitin OS=Trypanosoma cruzi PE=3 SV=1[more]
UBIQ_CHLRE1.183e-1197.06Ubiquitin OS=Chlamydomonas reinhardtii GN=UBI1 PE=... [more]
UBIQ_NEUCR1.544e-1197.06Ubiquitin OS=Neurospora crassa GN=ubi-1 PE=1 SV=1[more]

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Properties
Property NameValue
Genbank descriptionC05140H01SK FerrChloL1 Citrus clementina cDNA clone C05140H01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX296430 ID=CX296430; Name=CX296430; organism=Citrus clementina; type=EST; length=104bp
CTTGAGGTCGAAAGCTCTGACACCATTGATAATGTAAAAGCCAAGATCCA
GGATAAGGAAGGGATCCCACCAGACCAGCAAAGGCTCATCTTTGCTGGCA
AACA
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