CX296430

Overview
NameCX296430
Unique NameCX296430
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length104
Libraries
Library NameType
FerrChloL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15290 contig Ccv1_Contig15290:113..216. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CX296430 vs. ExPASy Swiss-Prot
Match: UBL1_ORYSJ (Ubiquitin-like protein 1 OS=Oryza sativa subsp. japonica GN=UBL1 PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 2.634e-11
Identity = 32/34 (94.12%), Postives = 33/34 (97.06%), Query Frame = 1 
Query:    1 LEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGK 102
            LEVESSDTI NVKAK+QDKEGIPPDQQRLIFAGK
Sbjct:   15 LEVESSDTIQNVKAKVQDKEGIPPDQQRLIFAGK 48
[Close]
BLAST of CX296430 vs. ExPASy Swiss-Prot
Match: UBIQ_TRYBB (Ubiquitin OS=Trypanosoma brucei brucei PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 2.634e-11
Identity = 32/34 (94.12%), Postives = 34/34 (100.00%), Query Frame = 1 
Query:    1 LEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGK 102
            LEVE+SDTI+NVKAKIQDKEGIPPDQQRLIFAGK
Sbjct:   15 LEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGK 48
[Close]
BLAST of CX296430 vs. ExPASy Swiss-Prot
Match: UBIQ_GEOCY (Ubiquitin OS=Geodia cydonium PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 2.634e-11
Identity = 32/34 (94.12%), Postives = 34/34 (100.00%), Query Frame = 1 
Query:    1 LEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGK 102
            LEVE+SDTI+NVKAKIQDKEGIPPDQQRLIFAGK
Sbjct:   15 LEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGK 48
[Close]
BLAST of CX296430 vs. ExPASy Swiss-Prot
Match: UBIQ_CAEEL (Ubiquitin OS=Caenorhabditis elegans GN=ubq-1 PE=1 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 2.634e-11
Identity = 32/34 (94.12%), Postives = 34/34 (100.00%), Query Frame = 1 
Query:    1 LEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGK 102
            LEVE+SDTI+NVKAKIQDKEGIPPDQQRLIFAGK
Sbjct:   15 LEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGK 48
[Close]
BLAST of CX296430 vs. ExPASy Swiss-Prot
Match: UBIQ_AGLNE (Ubiquitin OS=Aglaothamnion neglectum PE=3 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 3.441e-11
Identity = 32/34 (94.12%), Postives = 33/34 (97.06%), Query Frame = 1 
Query:    1 LEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGK 102
            LEVESSDTI+NVK KIQDKEGIPPDQQRLIFAGK
Sbjct:   15 LEVESSDTIENVKTKIQDKEGIPPDQQRLIFAGK 48
[Close]
BLAST of CX296430 vs. ExPASy Swiss-Prot
Match: UBIQ_ACECL (Ubiquitin OS=Acetabularia cliftonii PE=3 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 3.441e-11
Identity = 31/34 (91.18%), Postives = 34/34 (100.00%), Query Frame = 1 
Query:    1 LEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGK 102
            LEVESSDT++NVK+KIQDKEGIPPDQQRLIFAGK
Sbjct:   15 LEVESSDTVENVKSKIQDKEGIPPDQQRLIFAGK 48
[Close]
BLAST of CX296430 vs. ExPASy Swiss-Prot
Match: UBIQ_XENLA (Ubiquitin OS=Xenopus laevis PE=1 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 4.493e-11
Identity = 32/34 (94.12%), Postives = 33/34 (97.06%), Query Frame = 1 
Query:    1 LEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGK 102
            LEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGK
Sbjct:   15 LEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGK 48
[Close]
BLAST of CX296430 vs. ExPASy Swiss-Prot
Match: UBIQ_SPOFR (Ubiquitin OS=Spodoptera frugiperda PE=3 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 4.493e-11
Identity = 32/34 (94.12%), Postives = 33/34 (97.06%), Query Frame = 1 
Query:    1 LEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGK 102
            LEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGK
Sbjct:   15 LEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGK 48
[Close]
BLAST of CX296430 vs. ExPASy Swiss-Prot
Match: UBIQ_SHEEP (Ubiquitin OS=Ovis aries GN=UBA52 PE=3 SV=2)

HSP 1 Score: 66.6254 bits (161), Expect = 4.493e-11
Identity = 32/34 (94.12%), Postives = 33/34 (97.06%), Query Frame = 1 
Query:    1 LEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGK 102
            LEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGK
Sbjct:   15 LEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGK 48
[Close]
BLAST of CX296430 vs. ExPASy Swiss-Prot
Match: UBIQ_RAT (Ubiquitin OS=Rattus norvegicus GN=Rps27a PE=1 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 4.493e-11
Identity = 32/34 (94.12%), Postives = 33/34 (97.06%), Query Frame = 1 
Query:    1 LEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGK 102
            LEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGK
Sbjct:   15 LEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGK 48
The following BLAST results are available for this feature:
BLAST of CX296430 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 67
Match NameE-valueIdentityDescription
UBL1_ORYSJ2.634e-1194.12Ubiquitin-like protein 1 OS=Oryza sativa subsp. ja... [more]
UBIQ_TRYBB2.634e-1194.12Ubiquitin OS=Trypanosoma brucei brucei PE=3 SV=1[more]
UBIQ_GEOCY2.634e-1194.12Ubiquitin OS=Geodia cydonium PE=3 SV=1[more]
UBIQ_CAEEL2.634e-1194.12Ubiquitin OS=Caenorhabditis elegans GN=ubq-1 PE=1 ... [more]
UBIQ_AGLNE3.441e-1194.12Ubiquitin OS=Aglaothamnion neglectum PE=3 SV=1[more]
UBIQ_ACECL3.441e-1191.18Ubiquitin OS=Acetabularia cliftonii PE=3 SV=1[more]
UBIQ_XENLA4.493e-1194.12Ubiquitin OS=Xenopus laevis PE=1 SV=1[more]
UBIQ_SPOFR4.493e-1194.12Ubiquitin OS=Spodoptera frugiperda PE=3 SV=1[more]
UBIQ_SHEEP4.493e-1194.12Ubiquitin OS=Ovis aries GN=UBA52 PE=3 SV=2[more]
UBIQ_RAT4.493e-1194.12Ubiquitin OS=Rattus norvegicus GN=Rps27a PE=1 SV=1[more]

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Properties
Property NameValue
Genbank descriptionC05140H01SK FerrChloL1 Citrus clementina cDNA clone C05140H01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX296430 ID=CX296430; Name=CX296430; organism=Citrus clementina; type=EST; length=104bp
CTTGAGGTCGAAAGCTCTGACACCATTGATAATGTAAAAGCCAAGATCCA
GGATAAGGAAGGGATCCCACCAGACCAGCAAAGGCTCATCTTTGCTGGCA
AACA
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