CX296430

Overview
NameCX296430
Unique NameCX296430
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length104
Libraries
Library NameType
FerrChloL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15290 contig Ccv1_Contig15290:113..216. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CX296430 vs. ExPASy Swiss-Prot
Match: UBIQ_RABIT (Ubiquitin OS=Oryctolagus cuniculus PE=1 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 4.493e-11
Identity = 32/34 (94.12%), Postives = 33/34 (97.06%), Query Frame = 1 
Query:    1 LEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGK 102
            LEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGK
Sbjct:   15 LEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGK 48
[Close]
BLAST of CX296430 vs. ExPASy Swiss-Prot
Match: UBIQ_PONPY (Ubiquitin OS=Pongo pygmaeus GN=UBA52 PE=3 SV=2)

HSP 1 Score: 66.6254 bits (161), Expect = 4.493e-11
Identity = 32/34 (94.12%), Postives = 33/34 (97.06%), Query Frame = 1 
Query:    1 LEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGK 102
            LEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGK
Sbjct:   15 LEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGK 48
[Close]
BLAST of CX296430 vs. ExPASy Swiss-Prot
Match: UBIQ_PLUXY (Ubiquitin OS=Plutella xylostella PE=3 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 4.493e-11
Identity = 32/34 (94.12%), Postives = 33/34 (97.06%), Query Frame = 1 
Query:    1 LEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGK 102
            LEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGK
Sbjct:   15 LEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGK 48
[Close]
BLAST of CX296430 vs. ExPASy Swiss-Prot
Match: UBIQ_PIG (Ubiquitin OS=Sus scrofa GN=UBA52 PE=3 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 4.493e-11
Identity = 32/34 (94.12%), Postives = 33/34 (97.06%), Query Frame = 1 
Query:    1 LEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGK 102
            LEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGK
Sbjct:   15 LEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGK 48
[Close]
BLAST of CX296430 vs. ExPASy Swiss-Prot
Match: UBIQ_PANTR (Ubiquitin OS=Pan troglodytes GN=UBB PE=1 SV=2)

HSP 1 Score: 66.6254 bits (161), Expect = 4.493e-11
Identity = 32/34 (94.12%), Postives = 33/34 (97.06%), Query Frame = 1 
Query:    1 LEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGK 102
            LEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGK
Sbjct:   15 LEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGK 48
[Close]
BLAST of CX296430 vs. ExPASy Swiss-Prot
Match: UBIQ_OPHHA (Ubiquitin OS=Ophiophagus hannah PE=3 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 4.493e-11
Identity = 32/34 (94.12%), Postives = 33/34 (97.06%), Query Frame = 1 
Query:    1 LEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGK 102
            LEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGK
Sbjct:   15 LEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGK 48
[Close]
BLAST of CX296430 vs. ExPASy Swiss-Prot
Match: UBIQ_MOUSE (Ubiquitin OS=Mus musculus GN=Rps27a PE=1 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 4.493e-11
Identity = 32/34 (94.12%), Postives = 33/34 (97.06%), Query Frame = 1 
Query:    1 LEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGK 102
            LEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGK
Sbjct:   15 LEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGK 48
[Close]
BLAST of CX296430 vs. ExPASy Swiss-Prot
Match: UBIQ_MANSE (Ubiquitin OS=Manduca sexta PE=3 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 4.493e-11
Identity = 32/34 (94.12%), Postives = 33/34 (97.06%), Query Frame = 1 
Query:    1 LEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGK 102
            LEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGK
Sbjct:   15 LEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGK 48
[Close]
BLAST of CX296430 vs. ExPASy Swiss-Prot
Match: UBIQ_MACFA (Ubiquitin OS=Macaca fascicularis GN=UBA52 PE=3 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 4.493e-11
Identity = 32/34 (94.12%), Postives = 33/34 (97.06%), Query Frame = 1 
Query:    1 LEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGK 102
            LEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGK
Sbjct:   15 LEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGK 48
[Close]
BLAST of CX296430 vs. ExPASy Swiss-Prot
Match: UBIQ_LUMTE (Ubiquitin (Fragment) OS=Lumbricus terrestris PE=1 SV=2)

HSP 1 Score: 66.6254 bits (161), Expect = 4.493e-11
Identity = 32/34 (94.12%), Postives = 33/34 (97.06%), Query Frame = 1 
Query:    1 LEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGK 102
            LEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGK
Sbjct:    4 LEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGK 37
The following BLAST results are available for this feature:
BLAST of CX296430 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 67
Match NameE-valueIdentityDescription
UBIQ_RABIT4.493e-1194.12Ubiquitin OS=Oryctolagus cuniculus PE=1 SV=1[more]
UBIQ_PONPY4.493e-1194.12Ubiquitin OS=Pongo pygmaeus GN=UBA52 PE=3 SV=2[more]
UBIQ_PLUXY4.493e-1194.12Ubiquitin OS=Plutella xylostella PE=3 SV=1[more]
UBIQ_PIG4.493e-1194.12Ubiquitin OS=Sus scrofa GN=UBA52 PE=3 SV=1[more]
UBIQ_PANTR4.493e-1194.12Ubiquitin OS=Pan troglodytes GN=UBB PE=1 SV=2[more]
UBIQ_OPHHA4.493e-1194.12Ubiquitin OS=Ophiophagus hannah PE=3 SV=1[more]
UBIQ_MOUSE4.493e-1194.12Ubiquitin OS=Mus musculus GN=Rps27a PE=1 SV=1[more]
UBIQ_MANSE4.493e-1194.12Ubiquitin OS=Manduca sexta PE=3 SV=1[more]
UBIQ_MACFA4.493e-1194.12Ubiquitin OS=Macaca fascicularis GN=UBA52 PE=3 SV=... [more]
UBIQ_LUMTE4.493e-1194.12Ubiquitin (Fragment) OS=Lumbricus terrestris PE=1 ... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC05140H01SK FerrChloL1 Citrus clementina cDNA clone C05140H01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX296430 ID=CX296430; Name=CX296430; organism=Citrus clementina; type=EST; length=104bp
CTTGAGGTCGAAAGCTCTGACACCATTGATAATGTAAAAGCCAAGATCCA
GGATAAGGAAGGGATCCCACCAGACCAGCAAAGGCTCATCTTTGCTGGCA
AACA
back to top