CX296430

Overview
NameCX296430
Unique NameCX296430
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length104
Libraries
Library NameType
FerrChloL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15290 contig Ccv1_Contig15290:113..216. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CX296430 vs. ExPASy Swiss-Prot
Match: UBIQ_LEIMA (Ubiquitin OS=Leishmania major GN=UB-EP52 PE=3 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 4.493e-11
Identity = 32/34 (94.12%), Postives = 33/34 (97.06%), Query Frame = 1 
Query:    1 LEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGK 102
            LEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGK
Sbjct:   15 LEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGK 48
[Close]
BLAST of CX296430 vs. ExPASy Swiss-Prot
Match: UBIQ_ICTPU (Ubiquitin OS=Ictalurus punctatus GN=rps27a PE=3 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 4.493e-11
Identity = 32/34 (94.12%), Postives = 33/34 (97.06%), Query Frame = 1 
Query:    1 LEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGK 102
            LEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGK
Sbjct:   15 LEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGK 48
[Close]
BLAST of CX296430 vs. ExPASy Swiss-Prot
Match: UBIQ_HUMAN (Ubiquitin OS=Homo sapiens GN=RPS27A PE=1 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 4.493e-11
Identity = 32/34 (94.12%), Postives = 33/34 (97.06%), Query Frame = 1 
Query:    1 LEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGK 102
            LEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGK
Sbjct:   15 LEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGK 48
[Close]
BLAST of CX296430 vs. ExPASy Swiss-Prot
Match: UBIQ_HORSE (Ubiquitin OS=Equus caballus GN=UBB PE=3 SV=2)

HSP 1 Score: 66.6254 bits (161), Expect = 4.493e-11
Identity = 32/34 (94.12%), Postives = 33/34 (97.06%), Query Frame = 1 
Query:    1 LEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGK 102
            LEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGK
Sbjct:   15 LEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGK 48
[Close]
BLAST of CX296430 vs. ExPASy Swiss-Prot
Match: UBIQ_GORGO (Ubiquitin OS=Gorilla gorilla gorilla GN=UBB PE=3 SV=2)

HSP 1 Score: 66.6254 bits (161), Expect = 4.493e-11
Identity = 32/34 (94.12%), Postives = 33/34 (97.06%), Query Frame = 1 
Query:    1 LEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGK 102
            LEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGK
Sbjct:   15 LEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGK 48
[Close]
BLAST of CX296430 vs. ExPASy Swiss-Prot
Match: UBIQ_FELCA (Ubiquitin OS=Felis catus GN=UBA52 PE=3 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 4.493e-11
Identity = 32/34 (94.12%), Postives = 33/34 (97.06%), Query Frame = 1 
Query:    1 LEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGK 102
            LEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGK
Sbjct:   15 LEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGK 48
[Close]
BLAST of CX296430 vs. ExPASy Swiss-Prot
Match: UBIQ_DROME (Ubiquitin OS=Drosophila melanogaster GN=RpL40 PE=1 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 4.493e-11
Identity = 32/34 (94.12%), Postives = 33/34 (97.06%), Query Frame = 1 
Query:    1 LEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGK 102
            LEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGK
Sbjct:   15 LEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGK 48
[Close]
BLAST of CX296430 vs. ExPASy Swiss-Prot
Match: UBIQ_CRIGR (Ubiquitin OS=Cricetulus griseus PE=3 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 4.493e-11
Identity = 32/34 (94.12%), Postives = 33/34 (97.06%), Query Frame = 1 
Query:    1 LEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGK 102
            LEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGK
Sbjct:   15 LEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGK 48
[Close]
BLAST of CX296430 vs. ExPASy Swiss-Prot
Match: UBIQ_CHICK (Ubiquitin OS=Gallus gallus GN=UBA52 PE=3 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 4.493e-11
Identity = 32/34 (94.12%), Postives = 33/34 (97.06%), Query Frame = 1 
Query:    1 LEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGK 102
            LEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGK
Sbjct:   15 LEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGK 48
[Close]
BLAST of CX296430 vs. ExPASy Swiss-Prot
Match: UBIQ_CERCA (Ubiquitin OS=Ceratitis capitata PE=1 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 4.493e-11
Identity = 32/34 (94.12%), Postives = 33/34 (97.06%), Query Frame = 1 
Query:    1 LEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGK 102
            LEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGK
Sbjct:   15 LEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGK 48
The following BLAST results are available for this feature:
BLAST of CX296430 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 67
Match NameE-valueIdentityDescription
UBIQ_LEIMA4.493e-1194.12Ubiquitin OS=Leishmania major GN=UB-EP52 PE=3 SV=1[more]
UBIQ_ICTPU4.493e-1194.12Ubiquitin OS=Ictalurus punctatus GN=rps27a PE=3 SV... [more]
UBIQ_HUMAN4.493e-1194.12Ubiquitin OS=Homo sapiens GN=RPS27A PE=1 SV=1[more]
UBIQ_HORSE4.493e-1194.12Ubiquitin OS=Equus caballus GN=UBB PE=3 SV=2[more]
UBIQ_GORGO4.493e-1194.12Ubiquitin OS=Gorilla gorilla gorilla GN=UBB PE=3 S... [more]
UBIQ_FELCA4.493e-1194.12Ubiquitin OS=Felis catus GN=UBA52 PE=3 SV=1[more]
UBIQ_DROME4.493e-1194.12Ubiquitin OS=Drosophila melanogaster GN=RpL40 PE=1... [more]
UBIQ_CRIGR4.493e-1194.12Ubiquitin OS=Cricetulus griseus PE=3 SV=1[more]
UBIQ_CHICK4.493e-1194.12Ubiquitin OS=Gallus gallus GN=UBA52 PE=3 SV=1[more]
UBIQ_CERCA4.493e-1194.12Ubiquitin OS=Ceratitis capitata PE=1 SV=1[more]

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Properties
Property NameValue
Genbank descriptionC05140H01SK FerrChloL1 Citrus clementina cDNA clone C05140H01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX296430 ID=CX296430; Name=CX296430; organism=Citrus clementina; type=EST; length=104bp
CTTGAGGTCGAAAGCTCTGACACCATTGATAATGTAAAAGCCAAGATCCA
GGATAAGGAAGGGATCCCACCAGACCAGCAAAGGCTCATCTTTGCTGGCA
AACA
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