CX296430

Overview
NameCX296430
Unique NameCX296430
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length104
Libraries
Library NameType
FerrChloL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15290 contig Ccv1_Contig15290:113..216. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CX296430 vs. ExPASy Swiss-Prot
Match: UBIQ_CAVPO (Ubiquitin OS=Cavia porcellus GN=RPS27A PE=3 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 4.493e-11
Identity = 32/34 (94.12%), Postives = 33/34 (97.06%), Query Frame = 1 
Query:    1 LEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGK 102
            LEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGK
Sbjct:   15 LEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGK 48
[Close]
BLAST of CX296430 vs. ExPASy Swiss-Prot
Match: UBIQ_CANFA (Ubiquitin OS=Canis familiaris GN=UBA52 PE=3 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 4.493e-11
Identity = 32/34 (94.12%), Postives = 33/34 (97.06%), Query Frame = 1 
Query:    1 LEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGK 102
            LEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGK
Sbjct:   15 LEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGK 48
[Close]
BLAST of CX296430 vs. ExPASy Swiss-Prot
Match: UBIQ_CAMDR (Ubiquitin OS=Camelus dromedarius PE=3 SV=2)

HSP 1 Score: 66.6254 bits (161), Expect = 4.493e-11
Identity = 32/34 (94.12%), Postives = 33/34 (97.06%), Query Frame = 1 
Query:    1 LEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGK 102
            LEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGK
Sbjct:   15 LEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGK 48
[Close]
BLAST of CX296430 vs. ExPASy Swiss-Prot
Match: UBIQ_BOVIN (Ubiquitin OS=Bos taurus GN=RPS27A PE=1 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 4.493e-11
Identity = 32/34 (94.12%), Postives = 33/34 (97.06%), Query Frame = 1 
Query:    1 LEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGK 102
            LEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGK
Sbjct:   15 LEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGK 48
[Close]
BLAST of CX296430 vs. ExPASy Swiss-Prot
Match: UBIQ_ACACA (Ubiquitin OS=Acanthamoeba castellanii PE=3 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 4.493e-11
Identity = 32/34 (94.12%), Postives = 33/34 (97.06%), Query Frame = 1 
Query:    1 LEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGK 102
            LEVESSDTI+NVK KIQDKEGIPPDQQRLIFAGK
Sbjct:   15 LEVESSDTIENVKQKIQDKEGIPPDQQRLIFAGK 48
[Close]
BLAST of CX296430 vs. ExPASy Swiss-Prot
Match: UBIQ_TETPY (Ubiquitin OS=Tetrahymena pyriformis GN=TUF11 PE=3 SV=1)

HSP 1 Score: 66.2402 bits (160), Expect = 5.869e-11
Identity = 31/34 (91.18%), Postives = 34/34 (100.00%), Query Frame = 1 
Query:    1 LEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGK 102
            L+VE+SDTI+NVKAKIQDKEGIPPDQQRLIFAGK
Sbjct:   15 LDVEASDTIENVKAKIQDKEGIPPDQQRLIFAGK 48
[Close]
BLAST of CX296430 vs. ExPASy Swiss-Prot
Match: UBIQ_EUPEU (Ubiquitin OS=Euplotes eurystomus PE=3 SV=1)

HSP 1 Score: 65.855 bits (159), Expect = 7.665e-11
Identity = 31/34 (91.18%), Postives = 32/34 (94.12%), Query Frame = 1 
Query:    1 LEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGK 102
            L+VE SDTIDNVK KIQDKEGIPPDQQRLIFAGK
Sbjct:   15 LDVEQSDTIDNVKTKIQDKEGIPPDQQRLIFAGK 48
The following BLAST results are available for this feature:
BLAST of CX296430 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 67
Match NameE-valueIdentityDescription
UBIQ_CAVPO4.493e-1194.12Ubiquitin OS=Cavia porcellus GN=RPS27A PE=3 SV=1[more]
UBIQ_CANFA4.493e-1194.12Ubiquitin OS=Canis familiaris GN=UBA52 PE=3 SV=1[more]
UBIQ_CAMDR4.493e-1194.12Ubiquitin OS=Camelus dromedarius PE=3 SV=2[more]
UBIQ_BOVIN4.493e-1194.12Ubiquitin OS=Bos taurus GN=RPS27A PE=1 SV=1[more]
UBIQ_ACACA4.493e-1194.12Ubiquitin OS=Acanthamoeba castellanii PE=3 SV=1[more]
UBIQ_TETPY5.869e-1191.18Ubiquitin OS=Tetrahymena pyriformis GN=TUF11 PE=3 ... [more]
UBIQ_EUPEU7.665e-1191.18Ubiquitin OS=Euplotes eurystomus PE=3 SV=1[more]

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Properties
Property NameValue
Genbank descriptionC05140H01SK FerrChloL1 Citrus clementina cDNA clone C05140H01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX296430 ID=CX296430; Name=CX296430; organism=Citrus clementina; type=EST; length=104bp
CTTGAGGTCGAAAGCTCTGACACCATTGATAATGTAAAAGCCAAGATCCA
GGATAAGGAAGGGATCCCACCAGACCAGCAAAGGCTCATCTTTGCTGGCA
AACA
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