CX296436

Overview
NameCX296436
Unique NameCX296436
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length338
Libraries
Library NameType
FerrChloL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig561 contig Ccv1_Contig561:24..361. BLAST: Citrus Unigene V1 Contigs to TAIR9
Homology
BLAST of CX296436 vs. ExPASy Swiss-Prot
Match: ATP9_VICFA (ATP synthase subunit 9, mitochondrial OS=Vicia faba GN=ATP9 PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 6.746e-12
Identity = 39/57 (68.42%), Postives = 40/57 (70.18%), Query Frame = -1
Query:   84 MLEGAKLMXXXXXXXXXXXXXXXXGNVFSSLIHSVARNPSLAKQLFGYAILGFALTE 254
            MLEGAK +                GNVFSSLIHSVARNPSLAKQLFGYAILGFALTE
Sbjct:    1 MLEGAKSIGAGAATIASAGAAVGIGNVFSSLIHSVARNPSLAKQLFGYAILGFALTE 57          
BLAST of CX296436 vs. ExPASy Swiss-Prot
Match: ATP9_SOYBN (ATP synthase subunit 9, mitochondrial OS=Glycine max GN=ATP9 PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 6.746e-12
Identity = 39/57 (68.42%), Postives = 40/57 (70.18%), Query Frame = -1
Query:   84 MLEGAKLMXXXXXXXXXXXXXXXXGNVFSSLIHSVARNPSLAKQLFGYAILGFALTE 254
            MLEGAK +                GNVFSSLIHSVARNPSLAKQLFGYAILGFALTE
Sbjct:    1 MLEGAKSIGAGAATIASAGAAVGIGNVFSSLIHSVARNPSLAKQLFGYAILGFALTE 57          
BLAST of CX296436 vs. ExPASy Swiss-Prot
Match: ATP9_PEA (ATP synthase subunit 9, mitochondrial OS=Pisum sativum GN=ATP9 PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 6.746e-12
Identity = 39/57 (68.42%), Postives = 40/57 (70.18%), Query Frame = -1
Query:   84 MLEGAKLMXXXXXXXXXXXXXXXXGNVFSSLIHSVARNPSLAKQLFGYAILGFALTE 254
            MLEGAK +                GNVFSSLIHSVARNPSLAKQLFGYAILGFALTE
Sbjct:    1 MLEGAKSIGAGAATIASAGAAVGIGNVFSSLIHSVARNPSLAKQLFGYAILGFALTE 57          
BLAST of CX296436 vs. ExPASy Swiss-Prot
Match: ATP9_MARPO (ATP synthase subunit 9, mitochondrial OS=Marchantia polymorpha GN=ATP9 PE=3 SV=2)

HSP 1 Score: 68.9366 bits (167), Expect = 8.811e-12
Identity = 39/57 (68.42%), Postives = 41/57 (71.93%), Query Frame = -1
Query:   84 MLEGAKLMXXXXXXXXXXXXXXXXGNVFSSLIHSVARNPSLAKQLFGYAILGFALTE 254
            MLEGAKL+                GNVFSSLI+SVARNPSLAKQLFGYAILGFALTE
Sbjct:    1 MLEGAKLIGAGAATIALAGAAVGIGNVFSSLINSVARNPSLAKQLFGYAILGFALTE 57          
BLAST of CX296436 vs. ExPASy Swiss-Prot
Match: ATP9_BETVU (ATP synthase subunit 9, mitochondrial OS=Beta vulgaris GN=ATP9 PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 1.963e-11
Identity = 38/57 (66.67%), Postives = 40/57 (70.18%), Query Frame = -1
Query:   84 MLEGAKLMXXXXXXXXXXXXXXXXGNVFSSLIHSVARNPSLAKQLFGYAILGFALTE 254
            MLEGAK +                GNVFSSLIHSVARNPSLAKQLFGYAILGFAL+E
Sbjct:    1 MLEGAKSIGAGAATIASAGAAIGIGNVFSSLIHSVARNPSLAKQLFGYAILGFALSE 57          
BLAST of CX296436 vs. ExPASy Swiss-Prot
Match: ATP9_MALDO (ATP synthase subunit 9, mitochondrial OS=Malus domestica GN=ATP9 PE=3 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 3.348e-11
Identity = 38/57 (66.67%), Postives = 39/57 (68.42%), Query Frame = -1
Query:   84 MLEGAKLMXXXXXXXXXXXXXXXXGNVFSSLIHSVARNPSLAKQLFGYAILGFALTE 254
            MLEGAK +                GNVFSSLIHSVARNPSLAKQ FGYAILGFALTE
Sbjct:    1 MLEGAKSIGAGAATIASAGAAIGIGNVFSSLIHSVARNPSLAKQSFGYAILGFALTE 57          
BLAST of CX296436 vs. ExPASy Swiss-Prot
Match: ATP9_BRANA (ATP synthase subunit 9, mitochondrial OS=Brassica napus GN=ATP9 PE=2 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 3.348e-11
Identity = 38/57 (66.67%), Postives = 39/57 (68.42%), Query Frame = -1
Query:   84 MLEGAKLMXXXXXXXXXXXXXXXXGNVFSSLIHSVARNPSLAKQLFGYAILGFALTE 254
            MLEGAK +                GNVFSSLIHSVARNPSLAKQ FGYAILGFALTE
Sbjct:    1 MLEGAKSIGAGAATIASAGAAIGIGNVFSSLIHSVARNPSLAKQSFGYAILGFALTE 57          
BLAST of CX296436 vs. ExPASy Swiss-Prot
Match: ATP9_PETSP (ATP synthase subunit 9, mitochondrial OS=Petunia sp. GN=ATP9 PE=3 SV=1)

HSP 1 Score: 66.2402 bits (160), Expect = 5.711e-11
Identity = 38/57 (66.67%), Postives = 38/57 (66.67%), Query Frame = -1
Query:   84 MLEGAKLMXXXXXXXXXXXXXXXXGNVFSSLIHSVARNPSLAKQLFGYAILGFALTE 254
            MLEGAK M                GNV SS IHSVARNPSLAKQLFGYAILGFALTE
Sbjct:    1 MLEGAKSMGAGAATNASAGAAIGIGNVLSSSIHSVARNPSLAKQLFGYAILGFALTE 57          
The following BLAST results are available for this feature:
BLAST of CX296436 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 18
Match NameE-valueIdentityDescription
ATP9_VICFA6.746e-1268.42ATP synthase subunit 9, mitochondrial OS=Vicia fab... [more]
ATP9_SOYBN6.746e-1268.42ATP synthase subunit 9, mitochondrial OS=Glycine m... [more]
ATP9_PEA6.746e-1268.42ATP synthase subunit 9, mitochondrial OS=Pisum sat... [more]
ATP9_MARPO8.811e-1268.42ATP synthase subunit 9, mitochondrial OS=Marchanti... [more]
ATP9_BETVU1.963e-1166.67ATP synthase subunit 9, mitochondrial OS=Beta vulg... [more]
ATP9_MALDO3.348e-1166.67ATP synthase subunit 9, mitochondrial OS=Malus dom... [more]
ATP9_BRANA3.348e-1166.67ATP synthase subunit 9, mitochondrial OS=Brassica ... [more]
ATP9_PETSP5.711e-1166.67ATP synthase subunit 9, mitochondrial OS=Petunia s... [more]

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Properties
Property NameValue
Genbank descriptionC05141A02SK FerrChloL1 Citrus clementina cDNA clone C05141A02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX296436 ID=CX296436; Name=CX296436; organism=Citrus clementina; type=EST; length=338bp
TTTTTTTTTTTTTTCTTTTCTTTCTTAAATCAGAAGACGAATAAGATCAA
AAAGGCCATCATTAGGGCAAACAATGCAATAGCTTCGGTTAGAGCAAAGC
CCAAAATGGCATAACCAAATAATTGTTTAGCCAATGATGGATTTCGTGCC
ACGGAATGGATCAAAGAACTGAACACGTTTCCAATACCGACAGCAGCTCC
CGCTAAAGCAATTGTAGCAGCTCCGGCACCCATTAATTTTGCACCTTCTA
ACATCTCGGGTTGAGAATTCTCGTCACGCTTTTTCATTCACGATTTTTTG
TTATGGATTTCTCGTCGATTCTTCCCCTCGAGAACTAG
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