CX296442

Overview
NameCX296442
Unique NameCX296442
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length116
Libraries
Library NameType
FerrChloL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CX296442 vs. ExPASy Swiss-Prot
Match: UBIQ_LUPAL (Ubiquitin OS=Lupinus albus PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 2.782e-13
Identity = 36/38 (94.74%), Postives = 37/38 (97.37%), Query Frame = 1 
Query:    1 EAITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGK 114
            + ITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGK
Sbjct:   11 KTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGK 48
[Close]
BLAST of CX296442 vs. ExPASy Swiss-Prot
Match: UBIQ_LINUS (Ubiquitin OS=Linum usitatissimum PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 2.782e-13
Identity = 36/38 (94.74%), Postives = 37/38 (97.37%), Query Frame = 1 
Query:    1 EAITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGK 114
            + ITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGK
Sbjct:   11 KTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGK 48
[Close]
BLAST of CX296442 vs. ExPASy Swiss-Prot
Match: UBIQ_HORVU (Ubiquitin OS=Hordeum vulgare GN=MUB1 PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 2.782e-13
Identity = 36/38 (94.74%), Postives = 37/38 (97.37%), Query Frame = 1 
Query:    1 EAITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGK 114
            + ITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGK
Sbjct:   11 KTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGK 48
[Close]
BLAST of CX296442 vs. ExPASy Swiss-Prot
Match: UBIQ_HELAN (Ubiquitin OS=Helianthus annuus PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 2.782e-13
Identity = 36/38 (94.74%), Postives = 37/38 (97.37%), Query Frame = 1 
Query:    1 EAITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGK 114
            + ITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGK
Sbjct:   11 KTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGK 48
[Close]
BLAST of CX296442 vs. ExPASy Swiss-Prot
Match: UBIQ_DESAN (Ubiquitin OS=Deschampsia antarctica PE=2 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 2.782e-13
Identity = 36/38 (94.74%), Postives = 37/38 (97.37%), Query Frame = 1 
Query:    1 EAITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGK 114
            + ITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGK
Sbjct:   11 KTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGK 48
[Close]
BLAST of CX296442 vs. ExPASy Swiss-Prot
Match: UBIQ_DAUCA (Ubiquitin OS=Daucus carota PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 2.782e-13
Identity = 36/38 (94.74%), Postives = 37/38 (97.37%), Query Frame = 1 
Query:    1 EAITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGK 114
            + ITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGK
Sbjct:   11 KTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGK 48
[Close]
BLAST of CX296442 vs. ExPASy Swiss-Prot
Match: UBIQ_COPCO (Ubiquitin OS=Coprinus congregatus PE=1 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 2.782e-13
Identity = 36/38 (94.74%), Postives = 37/38 (97.37%), Query Frame = 1 
Query:    1 EAITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGK 114
            + ITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGK
Sbjct:   11 KTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGK 48
[Close]
BLAST of CX296442 vs. ExPASy Swiss-Prot
Match: UBIQ_BRARA (Ubiquitin OS=Brassica rapa PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 2.782e-13
Identity = 36/38 (94.74%), Postives = 37/38 (97.37%), Query Frame = 1 
Query:    1 EAITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGK 114
            + ITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGK
Sbjct:   11 KTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGK 48
[Close]
BLAST of CX296442 vs. ExPASy Swiss-Prot
Match: UBIQ_AVESA (Ubiquitin OS=Avena sativa PE=1 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 2.782e-13
Identity = 36/38 (94.74%), Postives = 37/38 (97.37%), Query Frame = 1 
Query:    1 EAITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGK 114
            + ITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGK
Sbjct:   11 KTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGK 48
[Close]
BLAST of CX296442 vs. ExPASy Swiss-Prot
Match: UBIQ_AVEFA (Ubiquitin OS=Avena fatua PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 2.782e-13
Identity = 36/38 (94.74%), Postives = 37/38 (97.37%), Query Frame = 1 
Query:    1 EAITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGK 114
            + ITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGK
Sbjct:   11 KTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGK 48
The following BLAST results are available for this feature:
BLAST of CX296442 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 73
Match NameE-valueIdentityDescription
UBIQ_LUPAL2.782e-1394.74Ubiquitin OS=Lupinus albus PE=3 SV=1[more]
UBIQ_LINUS2.782e-1394.74Ubiquitin OS=Linum usitatissimum PE=3 SV=1[more]
UBIQ_HORVU2.782e-1394.74Ubiquitin OS=Hordeum vulgare GN=MUB1 PE=3 SV=1[more]
UBIQ_HELAN2.782e-1394.74Ubiquitin OS=Helianthus annuus PE=3 SV=1[more]
UBIQ_DESAN2.782e-1394.74Ubiquitin OS=Deschampsia antarctica PE=2 SV=1[more]
UBIQ_DAUCA2.782e-1394.74Ubiquitin OS=Daucus carota PE=3 SV=1[more]
UBIQ_COPCO2.782e-1394.74Ubiquitin OS=Coprinus congregatus PE=1 SV=1[more]
UBIQ_BRARA2.782e-1394.74Ubiquitin OS=Brassica rapa PE=3 SV=1[more]
UBIQ_AVESA2.782e-1394.74Ubiquitin OS=Avena sativa PE=1 SV=1[more]
UBIQ_AVEFA2.782e-1394.74Ubiquitin OS=Avena fatua PE=3 SV=1[more]

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Properties
Property NameValue
Genbank descriptionC05141A09SK FerrChloL1 Citrus clementina cDNA clone C05141A09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX296442 ID=CX296442; Name=CX296442; organism=Citrus clementina; type=EST; length=116bp
GAGGCCATAACCCTTGAGGTCGAAAGCTCTGACACCATTGATAATGTAAA
AGCCAAGATCCAGGATAAGGAAGGGATCCCACCAGACCAGCAAAGGCTCA
TCTTTGCTGGCAAACA
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