CX296442

Overview
NameCX296442
Unique NameCX296442
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length116
Libraries
Library NameType
FerrChloL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CX296442 vs. ExPASy Swiss-Prot
Match: UBIQ_PONPY (Ubiquitin OS=Pongo pygmaeus GN=UBA52 PE=3 SV=2)

HSP 1 Score: 70.4774 bits (171), Expect = 3.076e-12
Identity = 34/38 (89.47%), Postives = 36/38 (94.74%), Query Frame = 1 
Query:    1 EAITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGK 114
            + ITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGK
Sbjct:   11 KTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGK 48
[Close]
BLAST of CX296442 vs. ExPASy Swiss-Prot
Match: UBIQ_PLUXY (Ubiquitin OS=Plutella xylostella PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 3.076e-12
Identity = 34/38 (89.47%), Postives = 36/38 (94.74%), Query Frame = 1 
Query:    1 EAITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGK 114
            + ITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGK
Sbjct:   11 KTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGK 48
[Close]
BLAST of CX296442 vs. ExPASy Swiss-Prot
Match: UBIQ_PIG (Ubiquitin OS=Sus scrofa GN=UBA52 PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 3.076e-12
Identity = 34/38 (89.47%), Postives = 36/38 (94.74%), Query Frame = 1 
Query:    1 EAITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGK 114
            + ITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGK
Sbjct:   11 KTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGK 48
[Close]
BLAST of CX296442 vs. ExPASy Swiss-Prot
Match: UBIQ_PANTR (Ubiquitin OS=Pan troglodytes GN=UBB PE=1 SV=2)

HSP 1 Score: 70.4774 bits (171), Expect = 3.076e-12
Identity = 34/38 (89.47%), Postives = 36/38 (94.74%), Query Frame = 1 
Query:    1 EAITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGK 114
            + ITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGK
Sbjct:   11 KTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGK 48
[Close]
BLAST of CX296442 vs. ExPASy Swiss-Prot
Match: UBIQ_OPHHA (Ubiquitin OS=Ophiophagus hannah PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 3.076e-12
Identity = 34/38 (89.47%), Postives = 36/38 (94.74%), Query Frame = 1 
Query:    1 EAITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGK 114
            + ITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGK
Sbjct:   11 KTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGK 48
[Close]
BLAST of CX296442 vs. ExPASy Swiss-Prot
Match: UBIQ_MOUSE (Ubiquitin OS=Mus musculus GN=Rps27a PE=1 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 3.076e-12
Identity = 34/38 (89.47%), Postives = 36/38 (94.74%), Query Frame = 1 
Query:    1 EAITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGK 114
            + ITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGK
Sbjct:   11 KTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGK 48
[Close]
BLAST of CX296442 vs. ExPASy Swiss-Prot
Match: UBIQ_MANSE (Ubiquitin OS=Manduca sexta PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 3.076e-12
Identity = 34/38 (89.47%), Postives = 36/38 (94.74%), Query Frame = 1 
Query:    1 EAITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGK 114
            + ITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGK
Sbjct:   11 KTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGK 48
[Close]
BLAST of CX296442 vs. ExPASy Swiss-Prot
Match: UBIQ_MACFA (Ubiquitin OS=Macaca fascicularis GN=UBA52 PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 3.076e-12
Identity = 34/38 (89.47%), Postives = 36/38 (94.74%), Query Frame = 1 
Query:    1 EAITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGK 114
            + ITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGK
Sbjct:   11 KTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGK 48
[Close]
BLAST of CX296442 vs. ExPASy Swiss-Prot
Match: UBIQ_ICTPU (Ubiquitin OS=Ictalurus punctatus GN=rps27a PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 3.076e-12
Identity = 34/38 (89.47%), Postives = 36/38 (94.74%), Query Frame = 1 
Query:    1 EAITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGK 114
            + ITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGK
Sbjct:   11 KTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGK 48
[Close]
BLAST of CX296442 vs. ExPASy Swiss-Prot
Match: UBIQ_HUMAN (Ubiquitin OS=Homo sapiens GN=RPS27A PE=1 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 3.076e-12
Identity = 34/38 (89.47%), Postives = 36/38 (94.74%), Query Frame = 1 
Query:    1 EAITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGK 114
            + ITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGK
Sbjct:   11 KTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGK 48
The following BLAST results are available for this feature:
BLAST of CX296442 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 73
Match NameE-valueIdentityDescription
UBIQ_PONPY3.076e-1289.47Ubiquitin OS=Pongo pygmaeus GN=UBA52 PE=3 SV=2[more]
UBIQ_PLUXY3.076e-1289.47Ubiquitin OS=Plutella xylostella PE=3 SV=1[more]
UBIQ_PIG3.076e-1289.47Ubiquitin OS=Sus scrofa GN=UBA52 PE=3 SV=1[more]
UBIQ_PANTR3.076e-1289.47Ubiquitin OS=Pan troglodytes GN=UBB PE=1 SV=2[more]
UBIQ_OPHHA3.076e-1289.47Ubiquitin OS=Ophiophagus hannah PE=3 SV=1[more]
UBIQ_MOUSE3.076e-1289.47Ubiquitin OS=Mus musculus GN=Rps27a PE=1 SV=1[more]
UBIQ_MANSE3.076e-1289.47Ubiquitin OS=Manduca sexta PE=3 SV=1[more]
UBIQ_MACFA3.076e-1289.47Ubiquitin OS=Macaca fascicularis GN=UBA52 PE=3 SV=... [more]
UBIQ_ICTPU3.076e-1289.47Ubiquitin OS=Ictalurus punctatus GN=rps27a PE=3 SV... [more]
UBIQ_HUMAN3.076e-1289.47Ubiquitin OS=Homo sapiens GN=RPS27A PE=1 SV=1[more]

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Properties
Property NameValue
Genbank descriptionC05141A09SK FerrChloL1 Citrus clementina cDNA clone C05141A09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX296442 ID=CX296442; Name=CX296442; organism=Citrus clementina; type=EST; length=116bp
GAGGCCATAACCCTTGAGGTCGAAAGCTCTGACACCATTGATAATGTAAA
AGCCAAGATCCAGGATAAGGAAGGGATCCCACCAGACCAGCAAAGGCTCA
TCTTTGCTGGCAAACA
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