CX296442

Overview
NameCX296442
Unique NameCX296442
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length116
Libraries
Library NameType
FerrChloL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15290 contig Ccv1_Contig15290:101..216. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX296442 vs. ExPASy Swiss-Prot
Match: UBIQ_BOVIN (Ubiquitin OS=Bos taurus GN=RPS27A PE=1 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 3.076e-12
Identity = 34/38 (89.47%), Postives = 36/38 (94.74%), Query Frame = 1
Query:    1 EAITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGK 114
            + ITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGK
Sbjct:   11 KTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGK 48          
BLAST of CX296442 vs. ExPASy Swiss-Prot
Match: UBIQ_ACACA (Ubiquitin OS=Acanthamoeba castellanii PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 3.076e-12
Identity = 34/38 (89.47%), Postives = 36/38 (94.74%), Query Frame = 1
Query:    1 EAITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGK 114
            + ITLEVESSDTI+NVK KIQDKEGIPPDQQRLIFAGK
Sbjct:   11 KTITLEVESSDTIENVKQKIQDKEGIPPDQQRLIFAGK 48          
BLAST of CX296442 vs. ExPASy Swiss-Prot
Match: UBIQ_TETPY (Ubiquitin OS=Tetrahymena pyriformis GN=TUF11 PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 4.017e-12
Identity = 33/38 (86.84%), Postives = 37/38 (97.37%), Query Frame = 1
Query:    1 EAITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGK 114
            + ITL+VE+SDTI+NVKAKIQDKEGIPPDQQRLIFAGK
Sbjct:   11 KTITLDVEASDTIENVKAKIQDKEGIPPDQQRLIFAGK 48          
BLAST of CX296442 vs. ExPASy Swiss-Prot
Match: UBIQ_LUMTE (Ubiquitin (Fragment) OS=Lumbricus terrestris PE=1 SV=2)

HSP 1 Score: 70.0922 bits (170), Expect = 4.017e-12
Identity = 34/36 (94.44%), Postives = 35/36 (97.22%), Query Frame = 1
Query:    7 ITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGK 114
            ITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGK
Sbjct:    2 ITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGK 37          
BLAST of CX296442 vs. ExPASy Swiss-Prot
Match: UBIQ_EUPEU (Ubiquitin OS=Euplotes eurystomus PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 5.246e-12
Identity = 33/38 (86.84%), Postives = 35/38 (92.11%), Query Frame = 1
Query:    1 EAITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGK 114
            + ITL+VE SDTIDNVK KIQDKEGIPPDQQRLIFAGK
Sbjct:   11 KTITLDVEQSDTIDNVKTKIQDKEGIPPDQQRLIFAGK 48          
BLAST of CX296442 vs. ExPASy Swiss-Prot
Match: UBIQ_TRYBB (Ubiquitin OS=Trypanosoma brucei brucei PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 6.852e-12
Identity = 33/38 (86.84%), Postives = 36/38 (94.74%), Query Frame = 1
Query:    1 EAITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGK 114
            + I LEVE+SDTI+NVKAKIQDKEGIPPDQQRLIFAGK
Sbjct:   11 KTIALEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGK 48          
BLAST of CX296442 vs. ExPASy Swiss-Prot
Match: UBIQ_EIMBO (Ubiquitin OS=Eimeria bovis PE=2 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 6.852e-12
Identity = 33/38 (86.84%), Postives = 36/38 (94.74%), Query Frame = 1
Query:    1 EAITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGK 114
            + ITL+VE SDTI+NVKAKIQDKEGIPPDQQRLIFAGK
Sbjct:   11 KTITLDVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGK 48          
BLAST of CX296442 vs. ExPASy Swiss-Prot
Match: UBIQ_STRPU (Ubiquitin OS=Strongylocentrotus purpuratus PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 8.949e-12
Identity = 33/38 (86.84%), Postives = 36/38 (94.74%), Query Frame = 1
Query:    1 EAITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGK 114
            + ITLEVE SD+I+NVKAKIQDKEGIPPDQQRLIFAGK
Sbjct:   11 KTITLEVEPSDSIENVKAKIQDKEGIPPDQQRLIFAGK 48          
BLAST of CX296442 vs. ExPASy Swiss-Prot
Match: UBIQ_ENCCU (Ubiquitin OS=Encephalitozoon cuniculi GN=ECU02_0740i PE=1 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 8.949e-12
Identity = 33/38 (86.84%), Postives = 36/38 (94.74%), Query Frame = 1
Query:    1 EAITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGK 114
            + ITLEVE SD+I+NVKAKIQDKEGIPPDQQRLIFAGK
Sbjct:   11 KTITLEVEPSDSIENVKAKIQDKEGIPPDQQRLIFAGK 48          
BLAST of CX296442 vs. ExPASy Swiss-Prot
Match: UBIQ_DICDI (Ubiquitin OS=Dictyostelium discoideum GN=ubqA PE=1 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 8.949e-12
Identity = 33/38 (86.84%), Postives = 35/38 (92.11%), Query Frame = 1
Query:    1 EAITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGK 114
            + ITLEVE SD I+NVKAKIQDKEGIPPDQQRLIFAGK
Sbjct:   11 KTITLEVEGSDNIENVKAKIQDKEGIPPDQQRLIFAGK 48          
The following BLAST results are available for this feature:
BLAST of CX296442 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 73
Match NameE-valueIdentityDescription
UBIQ_BOVIN3.076e-1289.47Ubiquitin OS=Bos taurus GN=RPS27A PE=1 SV=1[more]
UBIQ_ACACA3.076e-1289.47Ubiquitin OS=Acanthamoeba castellanii PE=3 SV=1[more]
UBIQ_TETPY4.017e-1286.84Ubiquitin OS=Tetrahymena pyriformis GN=TUF11 PE=3 ... [more]
UBIQ_LUMTE4.017e-1294.44Ubiquitin (Fragment) OS=Lumbricus terrestris PE=1 ... [more]
UBIQ_EUPEU5.246e-1286.84Ubiquitin OS=Euplotes eurystomus PE=3 SV=1[more]
UBIQ_TRYBB6.852e-1286.84Ubiquitin OS=Trypanosoma brucei brucei PE=3 SV=1[more]
UBIQ_EIMBO6.852e-1286.84Ubiquitin OS=Eimeria bovis PE=2 SV=1[more]
UBIQ_STRPU8.949e-1286.84Ubiquitin OS=Strongylocentrotus purpuratus PE=3 SV... [more]
UBIQ_ENCCU8.949e-1286.84Ubiquitin OS=Encephalitozoon cuniculi GN=ECU02_074... [more]
UBIQ_DICDI8.949e-1286.84Ubiquitin OS=Dictyostelium discoideum GN=ubqA PE=1... [more]

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Properties
Property NameValue
Genbank descriptionC05141A09SK FerrChloL1 Citrus clementina cDNA clone C05141A09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX296442 ID=CX296442; Name=CX296442; organism=Citrus clementina; type=EST; length=116bp
GAGGCCATAACCCTTGAGGTCGAAAGCTCTGACACCATTGATAATGTAAA
AGCCAAGATCCAGGATAAGGAAGGGATCCCACCAGACCAGCAAAGGCTCA
TCTTTGCTGGCAAACA
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