CX296442

Overview
NameCX296442
Unique NameCX296442
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length116
Libraries
Library NameType
FerrChloL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CX296442 vs. ExPASy Swiss-Prot
Match: UBIQ_LEIMA (Ubiquitin OS=Leishmania major GN=UB-EP52 PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 1.169e-11
Identity = 33/38 (86.84%), Postives = 35/38 (92.11%), Query Frame = 1 
Query:    1 EAITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGK 114
            + I LEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGK
Sbjct:   11 KTIALEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGK 48
[Close]
BLAST of CX296442 vs. ExPASy Swiss-Prot
Match: UBIQ_PHYIN (Ubiquitin OS=Phytophthora infestans PE=1 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 2.604e-11
Identity = 32/38 (84.21%), Postives = 35/38 (92.11%), Query Frame = 1 
Query:    1 EAITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGK 114
            + ITL+VE SD+IDNVK KIQDKEGIPPDQQRLIFAGK
Sbjct:   11 KTITLDVEPSDSIDNVKQKIQDKEGIPPDQQRLIFAGK 48
[Close]
BLAST of CX296442 vs. ExPASy Swiss-Prot
Match: UBIQ_LEITA (Ubiquitin OS=Leishmania tarentolae GN=UB-EP52 PE=3 SV=1)

HSP 1 Score: 65.4698 bits (158), Expect = 9.894e-11
Identity = 32/36 (88.89%), Postives = 33/36 (91.67%), Query Frame = 1 
Query:    7 ITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGK 114
            I LEVE SDTI+NVKAKIQDKEGIPPDQQRLIFA K
Sbjct:   13 IALEVEPSDTIENVKAKIQDKEGIPPDQQRLIFADK 48
The following BLAST results are available for this feature:
BLAST of CX296442 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 73
Match NameE-valueIdentityDescription
UBIQ_LEIMA1.169e-1186.84Ubiquitin OS=Leishmania major GN=UB-EP52 PE=3 SV=1[more]
UBIQ_PHYIN2.604e-1184.21Ubiquitin OS=Phytophthora infestans PE=1 SV=1[more]
UBIQ_LEITA9.894e-1188.89Ubiquitin OS=Leishmania tarentolae GN=UB-EP52 PE=3... [more]

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Properties
Property NameValue
Genbank descriptionC05141A09SK FerrChloL1 Citrus clementina cDNA clone C05141A09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX296442 ID=CX296442; Name=CX296442; organism=Citrus clementina; type=EST; length=116bp
GAGGCCATAACCCTTGAGGTCGAAAGCTCTGACACCATTGATAATGTAAA
AGCCAAGATCCAGGATAAGGAAGGGATCCCACCAGACCAGCAAAGGCTCA
TCTTTGCTGGCAAACA
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