CX296454

Overview
NameCX296454
Unique NameCX296454
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length429
Libraries
Library NameType
FerrChloL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig3690 contig Ccv1_Contig3690:373..801. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX296454 vs. ExPASy Swiss-Prot
Match: GLGS_BETVU (Glucose-1-phosphate adenylyltransferase small subunit, chloroplastic/amyloplastic (Fragment) OS=Beta vulgaris GN=AGPB1 PE=2 SV=1)

HSP 1 Score: 203.756 bits (517), Expect = 2.471e-52
Identity = 103/122 (84.43%), Postives = 110/122 (90.16%), Query Frame = 1
Query:    7 DSVIGEGCVIKNCKIHHSVVGLRSCISEGAIIEDTLLMGADYYETDADRRFLAAKGSVPIGIGKNSHIKRAIIDKNARIGDNVKIVNSDSVQEAARETDGYFIKSGIVTIIKDALIPSGTII 372
            DSVIGEGCVIKNCKIHHSV+GLRSCISEGAIIEDTLLMGADYYETDADR+FLAAKGSVPIGIG            NARIGD+VKI+NSD+VQEAARETDGYFIKSGIVTIIKDA+IPSGT+I
Sbjct:  380 DSVIGEGCVIKNCKIHHSVIGLRSCISEGAIIEDTLLMGADYYETDADRKFLAAKGSVPIGIG------------NARIGDDVKIINSDNVQEAARETDGYFIKSGIVTIIKDAMIPSGTVI 489          
BLAST of CX296454 vs. ExPASy Swiss-Prot
Match: GLGC_ANAVT (Glucose-1-phosphate adenylyltransferase OS=Anabaena variabilis (strain ATCC 29413 / PCC 7937) GN=glgC PE=3 SV=1)

HSP 1 Score: 155.992 bits (393), Expect = 5.910e-38
Identity = 70/122 (57.38%), Postives = 100/122 (81.97%), Query Frame = 1
Query:    7 DSVIGEGCVIKNCKIHHSVVGLRSCISEGAIIEDTLLMGADYYETDADRRFLAAKGSVPIGIGKNSHIKRAIIDKNARIGDNVKIVNSDSVQEAARETDGYFIKSGIVTIIKDALIPSGTII 372
            +S+IGEGC++KNC+I HSV+G+RS I  G +IE++LLMGAD+Y+   +R+    KG +P+GIG ++ I+RAIIDKNARIG +VKI+N D+VQEA RE+ G++I+SGIV ++K+A+I  GTII
Sbjct:  308 ESIIGEGCILKNCRIQHSVLGVRSRIETGCVIEESLLMGADFYQASVERQCSIDKGDIPVGIGPDTIIRRAIIDKNARIGHDVKIINKDNVQEADRESQGFYIRSGIVVVLKNAVITDGTII 429          
BLAST of CX296454 vs. ExPASy Swiss-Prot
Match: GLGC_ANASP (Glucose-1-phosphate adenylyltransferase OS=Anabaena sp. (strain PCC 7120) GN=glgC PE=1 SV=1)

HSP 1 Score: 155.221 bits (391), Expect = 1.008e-37
Identity = 70/122 (57.38%), Postives = 100/122 (81.97%), Query Frame = 1
Query:    7 DSVIGEGCVIKNCKIHHSVVGLRSCISEGAIIEDTLLMGADYYETDADRRFLAAKGSVPIGIGKNSHIKRAIIDKNARIGDNVKIVNSDSVQEAARETDGYFIKSGIVTIIKDALIPSGTII 372
            +S+IGEGC++KNC+I HSV+G+RS I  G +IE++LLMGAD+Y+   +R+    KG +P+GIG ++ I+RAIIDKNARIG +VKI+N D+VQEA RE+ G++I+SGIV ++K+A+I  GTII
Sbjct:  308 ESIIGEGCILKNCRIQHSVLGVRSRIETGCMIEESLLMGADFYQASVERQCSIDKGDIPVGIGPDTIIRRAIIDKNARIGHDVKIINKDNVQEADRESQGFYIRSGIVVVLKNAVITDGTII 429          
BLAST of CX296454 vs. ExPASy Swiss-Prot
Match: GLGC_CYAA5 (Glucose-1-phosphate adenylyltransferase OS=Cyanothece sp. (strain ATCC 51142) GN=glgC PE=3 SV=1)

HSP 1 Score: 154.066 bits (388), Expect = 2.246e-37
Identity = 69/122 (56.56%), Postives = 100/122 (81.97%), Query Frame = 1
Query:    7 DSVIGEGCVIKNCKIHHSVVGLRSCISEGAIIEDTLLMGADYYETDADRRFLAAKGSVPIGIGKNSHIKRAIIDKNARIGDNVKIVNSDSVQEAARETDGYFIKSGIVTIIKDALIPSGTII 372
            +S+I EGC+IK+C+IH+SV+G+RS I    ++ED+LLMGADYYE+   R+ L  +G +P+GIGK S I+RAI+DKNARIG NV IVN ++++E+ RE DG++I++GIV +IK+A+IP GT+I
Sbjct:  308 ESMISEGCMIKDCRIHNSVLGIRSRIETDCVVEDSLLMGADYYESLETRQSLLDQGKIPVGIGKGSTIRRAIVDKNARIGQNVTIVNKENIEESNREDDGFYIRNGIVVVIKNAVIPDGTVI 429          
BLAST of CX296454 vs. ExPASy Swiss-Prot
Match: GLGC_NOSP7 (Glucose-1-phosphate adenylyltransferase OS=Nostoc punctiforme (strain ATCC 29133 / PCC 73102) GN=glgC PE=3 SV=1)

HSP 1 Score: 153.68 bits (387), Expect = 2.933e-37
Identity = 69/122 (56.56%), Postives = 98/122 (80.33%), Query Frame = 1
Query:    7 DSVIGEGCVIKNCKIHHSVVGLRSCISEGAIIEDTLLMGADYYETDADRRFLAAKGSVPIGIGKNSHIKRAIIDKNARIGDNVKIVNSDSVQEAARETDGYFIKSGIVTIIKDALIPSGTII 372
            +S+IGEGC++KNC+I HSV+G+RS I  G +IE++LLMGAD+Y+   +R+    +  +P+GIG ++ I+ AIIDKNARIG +VKIVN D+VQEA RE  G++I+SGIV ++K+A+IP GTII
Sbjct:  308 ESIIGEGCILKNCRIQHSVLGVRSRIESGCVIEESLLMGADFYQASVERQCSLIENDIPVGIGTDTIIRGAIIDKNARIGHDVKIVNKDNVQEAERENQGFYIRSGIVVVLKNAVIPDGTII 429          
BLAST of CX296454 vs. ExPASy Swiss-Prot
Match: GLGC_SYNPW (Glucose-1-phosphate adenylyltransferase OS=Synechococcus sp. (strain WH7803) GN=glgC PE=3 SV=1)

HSP 1 Score: 149.058 bits (375), Expect = 7.224e-36
Identity = 63/122 (51.64%), Postives = 97/122 (79.51%), Query Frame = 1
Query:    7 DSVIGEGCVIKNCKIHHSVVGLRSCISEGAIIEDTLLMGADYYETDADRRFLAAKGSVPIGIGKNSHIKRAIIDKNARIGDNVKIVNSDSVQEAARETDGYFIKSGIVTIIKDALIPSGTII 372
            DS+IGEG ++K+C IHHSV+G+RS + +  +++D+LLMG+D++E+ ++R  L  +G +P+G+GK + +KRAI+DKNARIG NV IVN D V+EA R   G++I++GIV ++K+A IP GT+I
Sbjct:  310 DSIIGEGSILKSCSIHHSVLGVRSRVEDEVVLQDSLLMGSDFFESSSERAVLRERGGIPLGVGKGTTVKRAILDKNARIGSNVTIVNKDHVEEADRPEHGFYIRNGIVVVVKNASIPDGTVI 431          
BLAST of CX296454 vs. ExPASy Swiss-Prot
Match: GLGC_CYAP7 (Glucose-1-phosphate adenylyltransferase OS=Cyanothece sp. (strain PCC 7424) GN=glgC PE=3 SV=1)

HSP 1 Score: 149.058 bits (375), Expect = 7.224e-36
Identity = 68/122 (55.74%), Postives = 93/122 (76.23%), Query Frame = 1
Query:    7 DSVIGEGCVIKNCKIHHSVVGLRSCISEGAIIEDTLLMGADYYETDADRRFLAAKGSVPIGIGKNSHIKRAIIDKNARIGDNVKIVNSDSVQEAARETDGYFIKSGIVTIIKDALIPSGTII 372
            +S+I EGC++K+C+IHHSV+G+RS +     IED++LMGADYYE+   R+ +   G VP GIG  + I+RAIIDKNARIG NV I+N D ++EA RE +G+ I+SGIV +IK+A IP GT+I
Sbjct:  308 ESMISEGCILKDCRIHHSVLGIRSRVESDCTIEDSMLMGADYYESSTKRKAVLEAGKVPQGIGAGTTIRRAIIDKNARIGRNVLIINKDRIEEAEREDEGFLIRSGIVVVIKNATIPDGTVI 429          
BLAST of CX296454 vs. ExPASy Swiss-Prot
Match: GLGC_CYAP4 (Glucose-1-phosphate adenylyltransferase OS=Cyanothece sp. (strain PCC 7425 / ATCC 29141) GN=glgC PE=3 SV=1)

HSP 1 Score: 147.132 bits (370), Expect = 2.745e-35
Identity = 66/122 (54.10%), Postives = 97/122 (79.51%), Query Frame = 1
Query:    7 DSVIGEGCVIKNCKIHHSVVGLRSCISEGAIIEDTLLMGADYYETDADRRFLAAKGSVPIGIGKNSHIKRAIIDKNARIGDNVKIVNSDSVQEAARETDGYFIKSGIVTIIKDALIPSGTII 372
            +S+IGEGC++KNC+I HSV+G+RS I  G +I++ LLMGAD+Y+  A+R       SVP+GIG ++ ++RAI+DKNA IG NVKIVN D V+EA RE++G++I++GIV ++K+A+IP  T+I
Sbjct:  308 ESIIGEGCILKNCQIQHSVLGVRSRIESGCVIDNALLMGADFYQPFAERDHKIKNNSVPLGIGADTIVRRAIVDKNACIGRNVKIVNKDHVEEANRESEGFYIRNGIVVVLKNAVIPDNTVI 429          
BLAST of CX296454 vs. ExPASy Swiss-Prot
Match: GLGC_SYNP2 (Glucose-1-phosphate adenylyltransferase OS=Synechococcus sp. (strain ATCC 27264 / PCC 7002 / PR-6) GN=glgC PE=3 SV=1)

HSP 1 Score: 146.362 bits (368), Expect = 4.682e-35
Identity = 67/122 (54.92%), Postives = 94/122 (77.05%), Query Frame = 1
Query:    7 DSVIGEGCVIKNCKIHHSVVGLRSCISEGAIIEDTLLMGADYYETDADRRFLAAKGSVPIGIGKNSHIKRAIIDKNARIGDNVKIVNSDSVQEAARETDGYFIKSGIVTIIKDALIPSGTII 372
            +S+I EGC+IKNC+IHHSV+G+R+ +     IEDT++MGADYY+    R+    +G  PIGIG+ + I+RAIIDKNARIG NV IVN ++V+E+ RE  GY+I+SGI  ++K+A+IP GT+I
Sbjct:  308 ESMISEGCIIKNCRIHHSVLGIRTRVEADCTIEDTMIMGADYYQPYEKRQDCLRRGKPPIGIGEGTTIRRAIIDKNARIGKNVMIVNKENVEESNREELGYYIRSGITVVLKNAVIPDGTVI 429          
BLAST of CX296454 vs. ExPASy Swiss-Prot
Match: GLGC_SYNY3 (Glucose-1-phosphate adenylyltransferase OS=Synechocystis sp. (strain PCC 6803) GN=glgC PE=1 SV=2)

HSP 1 Score: 145.206 bits (365), Expect = 1.043e-34
Identity = 69/122 (56.56%), Postives = 93/122 (76.23%), Query Frame = 1
Query:    7 DSVIGEGCVIKNCKIHHSVVGLRSCISEGAIIEDTLLMGADYYETDADRRFLAAKGSVPIGIGKNSHIKRAIIDKNARIGDNVKIVNSDSVQEAARETDGYFIKSGIVTIIKDALIPSGTII 372
            +S+IGEGC+IK C+IHHSV+G+RS I     IEDTL+MG D+YE+ ++R  L A+G +  GIG  + I+RAIIDKNARIG NV IVN ++VQEA RE  G++I++GIV +IK+  I  GT+I
Sbjct:  318 ESMIGEGCMIKQCRIHHSVLGIRSRIESDCTIEDTLVMGNDFYESSSERDTLKARGEIAAGIGSGTTIRRAIIDKNARIGKNVMIVNKENVQEANREELGFYIRNGIVVVIKNVTIADGTVI 439          
The following BLAST results are available for this feature:
BLAST of CX296454 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 38
Match NameE-valueIdentityDescription
GLGS_BETVU2.471e-5284.43Glucose-1-phosphate adenylyltransferase small subu... [more]
GLGC_ANAVT5.910e-3857.38Glucose-1-phosphate adenylyltransferase OS=Anabaen... [more]
GLGC_ANASP1.008e-3757.38Glucose-1-phosphate adenylyltransferase OS=Anabaen... [more]
GLGC_CYAA52.246e-3756.56Glucose-1-phosphate adenylyltransferase OS=Cyanoth... [more]
GLGC_NOSP72.933e-3756.56Glucose-1-phosphate adenylyltransferase OS=Nostoc ... [more]
GLGC_SYNPW7.224e-3651.64Glucose-1-phosphate adenylyltransferase OS=Synecho... [more]
GLGC_CYAP77.224e-3655.74Glucose-1-phosphate adenylyltransferase OS=Cyanoth... [more]
GLGC_CYAP42.745e-3554.10Glucose-1-phosphate adenylyltransferase OS=Cyanoth... [more]
GLGC_SYNP24.682e-3554.92Glucose-1-phosphate adenylyltransferase OS=Synecho... [more]
GLGC_SYNY31.043e-3456.56Glucose-1-phosphate adenylyltransferase OS=Synecho... [more]

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Properties
Property NameValue
Genbank descriptionC05141C02SK FerrChloL1 Citrus clementina cDNA clone C05141C02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX296454 ID=CX296454; Name=CX296454; organism=Citrus clementina; type=EST; length=429bp
GAGGCTGATAGTGTAATTGGTGAAGGCTGTGTGATTAAGAATTGCAAAAT
TCACCATTCTGTTGTTGGGCTTCGATCTTGCATATCAGAAGGTGCAATTA
TCGAAGATACTTTACTTATGGGAGCAGATTATTATGAGACGGATGCGGAC
AGGAGGTTTTTGGCTGCAAAGGGTAGTGTTCCAATTGGTATTGGCAAGAA
TTCTCACATCAAGAGAGCAATAATCGACAAAAATGCTCGAATTGGGGATA
ATGTGAAGATCGTCAACAGTGACAGTGTGCAAGAAGCAGCAAGGGAAACA
GATGGATACTTCATCAAGAGCGGGATTGTCACAATAATCAAGGATGCCTT
GATTCCCAGTGGAACCATAATCTAAACTGTCGTCTTCTCTTCTCAGTTTC
ATCCCAAGCTACGGGCACCTTCCCCTCTA
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