CX296454

Overview
NameCX296454
Unique NameCX296454
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length429
Libraries
Library NameType
FerrChloL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX296454 vs. ExPASy Swiss-Prot
Match: GLGC_SYNP6 (Glucose-1-phosphate adenylyltransferase OS=Synechococcus sp. (strain ATCC 27144 / PCC 6301 / SAUG 1402/1) GN=glgC PE=3 SV=1)

HSP 1 Score: 140.584 bits (353), Expect = 2.569e-33
Identity = 67/121 (55.37%), Postives = 88/121 (72.73%), Query Frame = 1
Query:   10 SVIGEGCVIKNCKIHHSVVGLRSCISEGAIIEDTLLMGADYYETDADRRFLAAKGSVPIGIGKNSHIKRAIIDKNARIGDNVKIVNSDSVQEAARETDGYFIKSGIVTIIKDALIPSGTII 372
            S+IGEGC++K C + +SV+G+RS I    +I+D LLMGAD+YET   R    A G VP+GIG  S I+RAI+DKNA IG NV+IVN D V+EA RE  G+ I+SGIV ++K A+IP  T+I
Sbjct:  310 SIIGEGCILKQCTVQNSVLGIRSRIEADCVIQDALLMGADFYETSELRHQNRANGKVPMGIGSGSTIRRAIVDKNAHIGQNVQIVNKDHVEEADREDLGFMIRSGIVVVVKGAVIPDNTVI 430          
BLAST of CX296454 vs. ExPASy Swiss-Prot
Match: GLGC_SYNE7 (Glucose-1-phosphate adenylyltransferase OS=Synechococcus elongatus (strain PCC 7942) GN=glgC PE=3 SV=1)

HSP 1 Score: 140.584 bits (353), Expect = 2.569e-33
Identity = 67/121 (55.37%), Postives = 88/121 (72.73%), Query Frame = 1
Query:   10 SVIGEGCVIKNCKIHHSVVGLRSCISEGAIIEDTLLMGADYYETDADRRFLAAKGSVPIGIGKNSHIKRAIIDKNARIGDNVKIVNSDSVQEAARETDGYFIKSGIVTIIKDALIPSGTII 372
            S+IGEGC++K C + +SV+G+RS I    +I+D LLMGAD+YET   R    A G VP+GIG  S I+RAI+DKNA IG NV+IVN D V+EA RE  G+ I+SGIV ++K A+IP  T+I
Sbjct:  310 SIIGEGCILKQCTVQNSVLGIRSRIEADCVIQDALLMGADFYETSELRHQNRANGKVPMGIGSGSTIRRAIVDKNAHIGQNVQIVNKDHVEEADREDLGFMIRSGIVVVVKGAVIPDNTVI 430          
BLAST of CX296454 vs. ExPASy Swiss-Prot
Match: GLGC_CYAP8 (Glucose-1-phosphate adenylyltransferase OS=Cyanothece sp. (strain PCC 8801) GN=glgC PE=3 SV=1)

HSP 1 Score: 140.584 bits (353), Expect = 2.569e-33
Identity = 62/122 (50.82%), Postives = 95/122 (77.87%), Query Frame = 1
Query:    7 DSVIGEGCVIKNCKIHHSVVGLRSCISEGAIIEDTLLMGADYYETDADRRFLAAKGSVPIGIGKNSHIKRAIIDKNARIGDNVKIVNSDSVQEAARETDGYFIKSGIVTIIKDALIPSGTII 372
            +S++ EGC++K+C+IH+S++G+R+ I     IEDT+LMGADYYE+ + R   A +G +P+GIG+ S I+RAI+DKNARIG NV IVN +++ E+ +E  G++I++GIV I+K+A I  GT+I
Sbjct:  308 ESMVSEGCILKDCRIHNSILGIRTRIEANCTIEDTMLMGADYYESPSLRESKAQEGKIPMGIGEGSTIRRAIVDKNARIGRNVTIVNKENIDESNQEESGFYIRNGIVVILKNATIADGTVI 429          
BLAST of CX296454 vs. ExPASy Swiss-Prot
Match: GLGL3_SOLTU (Glucose-1-phosphate adenylyltransferase large subunit 3, chloroplastic/amyloplastic OS=Solanum tuberosum GN=AGPS3 PE=2 SV=1)

HSP 1 Score: 138.272 bits (347), Expect = 1.275e-32
Identity = 65/122 (53.28%), Postives = 89/122 (72.95%), Query Frame = 1
Query:    7 DSVIGEGCVIKNCKIHHSVVGLRSCISEGAIIEDTLLMGADYYETDADRRFLAAKGSVPIGIGKNSHIKRAIIDKNARIGDNVKIVNSDSVQEAARETDGYFIKSGIVTIIKDALIPSGTII 372
            DS++  G  + NC + HSVVG+RS I     ++DT+++GADYYETDA+ R   A+G VP+GIG+N+ IK  IIDKNARIG NV I NS+ VQEA R ++G+++ SGI  I K++ IP GT+I
Sbjct:  362 DSIVSHGIFLTNCFVEHSVVGIRSRIGTNVHLKDTVMLGADYYETDAEIRSQLAEGKVPLGIGENTRIKDCIIDKNARIGKNVVIANSEGVQEADRSSEGFYMASGITVISKNSTIPDGTVI 483          
BLAST of CX296454 vs. ExPASy Swiss-Prot
Match: GLGL1_ARATH (Glucose-1-phosphate adenylyltransferase large subunit 1, chloroplastic OS=Arabidopsis thaliana GN=ADG2 PE=1 SV=3)

HSP 1 Score: 137.502 bits (345), Expect = 2.175e-32
Identity = 62/122 (50.82%), Postives = 91/122 (74.59%), Query Frame = 1
Query:    7 DSVIGEGCVIKNCKIHHSVVGLRSCISEGAIIEDTLLMGADYYETDADRRFLAAKGSVPIGIGKNSHIKRAIIDKNARIGDNVKIVNSDSVQEAARETDGYFIKSGIVTIIKDALIPSGTII 372
            DS+I  G  + NC I HS+VG+RS +     ++DT+++GADYYET+A+   L A+G+VPIGIG+N+ I+  IIDKNAR+G NV I NS+ +QEA R +DG++I+SGI  I+K+++I  G +I
Sbjct:  401 DSIISHGSFLTNCLIEHSIVGIRSRVGSNVQLKDTVMLGADYYETEAEVAALLAEGNVPIGIGENTKIQECIIDKNARVGKNVIIANSEGIQEADRSSDGFYIRSGITVILKNSVIKDGVVI 522          
BLAST of CX296454 vs. ExPASy Swiss-Prot
Match: GLGL1_SOLTU (Glucose-1-phosphate adenylyltransferase large subunit 1 (Fragment) OS=Solanum tuberosum GN=AGPS1 PE=2 SV=1)

HSP 1 Score: 137.117 bits (344), Expect = 2.841e-32
Identity = 61/122 (50.00%), Postives = 91/122 (74.59%), Query Frame = 1
Query:    7 DSVIGEGCVIKNCKIHHSVVGLRSCISEGAIIEDTLLMGADYYETDADRRFLAAKGSVPIGIGKNSHIKRAIIDKNARIGDNVKIVNSDSVQEAARETDGYFIKSGIVTIIKDALIPSGTII 372
            D++I  GC +++C + HS+VG RS +  G  ++DT +MGADYY+T+++   L A+G VPIGIG+N+ I++ IIDKNA+IG NV I+N D VQEA R  +G++I+SGI+ I++ A I  GT+I
Sbjct:  349 DAIISHGCFLRDCSVEHSIVGERSRLDCGVELKDTFMMGADYYQTESEIASLLAEGKVPIGIGENTKIRKCIIDKNAKIGKNVSIINKDGVQEADRPEEGFYIRSGIIIILEKATIRDGTVI 470          
BLAST of CX296454 vs. ExPASy Swiss-Prot
Match: GLGL1_WHEAT (Glucose-1-phosphate adenylyltransferase large subunit (Fragment) OS=Triticum aestivum GN=AGA.1 PE=2 SV=1)

HSP 1 Score: 134.806 bits (338), Expect = 1.410e-31
Identity = 61/122 (50.00%), Postives = 89/122 (72.95%), Query Frame = 1
Query:    7 DSVIGEGCVIKNCKIHHSVVGLRSCISEGAIIEDTLLMGADYYETDADRRFLAAKGSVPIGIGKNSHIKRAIIDKNARIGDNVKIVNSDSVQEAARETDGYFIKSGIVTIIKDALIPSGTII 372
            DS+I  GC +  C++ HSVVG+RS I     ++DT+++GAD+YETD +R    A+G VPIGIG+N+ I+  IIDKNARIG NV I N++ VQEA R ++G+ I+SGI  ++K+++I  G +I
Sbjct:  180 DSIISHGCFLDKCRVEHSVVGIRSRIGSNVHLKDTVMLGADFYETDMERGDQLAEGKVPIGIGENTSIQNCIIDKNARIGKNVTIANAEGVQEADRASEGFHIRSGITVVLKNSVIADGLVI 301          
BLAST of CX296454 vs. ExPASy Swiss-Prot
Match: GLGL2_SOLTU (Glucose-1-phosphate adenylyltransferase large subunit 2, chloroplastic/amyloplastic OS=Solanum tuberosum GN=AGPS2 PE=2 SV=1)

HSP 1 Score: 132.88 bits (333), Expect = 5.357e-31
Identity = 59/122 (48.36%), Postives = 88/122 (72.13%), Query Frame = 1
Query:    7 DSVIGEGCVIKNCKIHHSVVGLRSCISEGAIIEDTLLMGADYYETDADRRFLAAKGSVPIGIGKNSHIKRAIIDKNARIGDNVKIVNSDSVQEAARETDGYFIKSGIVTIIKDALIPSGTII 372
            D++I  GC ++ C I HS+VG+RS +  G   +DT++MGADYY+T+ +   L A+G VPIG+G N+ I+  IIDKNA+IG +V I+N + V+EA R  +G++I+SGI  I+K+A I  GT+I
Sbjct:  398 DAIISHGCFLRECNIQHSIVGVRSRLDYGVEFKDTMMMGADYYQTECEIASLLAEGKVPIGVGPNTKIQNCIIDKNAKIGKDVVILNKEGVEEADRSAEGFYIRSGITVIMKNATIKDGTVI 519          
BLAST of CX296454 vs. ExPASy Swiss-Prot
Match: GLGL2_ARATH (Glucose-1-phosphate adenylyltransferase large subunit 2, chloroplastic OS=Arabidopsis thaliana GN=APL2 PE=2 SV=2)

HSP 1 Score: 132.109 bits (331), Expect = 9.138e-31
Identity = 56/119 (47.06%), Postives = 86/119 (72.27%), Query Frame = 1
Query:    7 DSVIGEGCVIKNCKIHHSVVGLRSCISEGAIIEDTLLMGADYYETDADRRFLAAKGSVPIGIGKNSHIKRAIIDKNARIGDNVKIVNSDSVQEAARETDGYFIKSGIVTIIKDALIPSG 363
            DS++  GC ++ C + HS+VG+RS +  G  ++DT++MGAD+Y+T+A+   L A+G VP+G+G+N+ IK  IIDKNA+IG NV I N+D V+E  R  +G+ I+SGI  ++K+A I  G
Sbjct:  397 DSIVSHGCFLRECSVQHSIVGIRSRLESGVELQDTMMMGADFYQTEAEIASLLAEGKVPVGVGQNTKIKNCIIDKNAKIGKNVVIANADGVEEGDRPEEGFHIRSGITVVLKNATIRDG 515          
BLAST of CX296454 vs. ExPASy Swiss-Prot
Match: GLGL1_BETVU (Glucose-1-phosphate adenylyltransferase large subunit, chloroplastic/amyloplastic OS=Beta vulgaris GN=AGPS1 PE=2 SV=1)

HSP 1 Score: 131.724 bits (330), Expect = 1.193e-30
Identity = 58/122 (47.54%), Postives = 88/122 (72.13%), Query Frame = 1
Query:    7 DSVIGEGCVIKNCKIHHSVVGLRSCISEGAIIEDTLLMGADYYETDADRRFLAAKGSVPIGIGKNSHIKRAIIDKNARIGDNVKIVNSDSVQEAARETDGYFIKSGIVTIIKDALIPSGTII 372
            DS++  GC ++   I HS+VG+RS +  G   +DT++MGADYY+T+++   L A+G VP+G+G+N+ IK  IIDKNA+IG +V I N+D V+EA R  +G++I+SGI  I+K+A I  G +I
Sbjct:  401 DSIVSHGCFLQESSIQHSIVGVRSRLESGVEFQDTMMMGADYYQTESEIASLLAEGKVPVGVGQNTKIKNCIIDKNAKIGKDVVIANTDGVEEADRPNEGFYIRSGITIILKNATIQDGLVI 522          
The following BLAST results are available for this feature:
BLAST of CX296454 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 38
Match NameE-valueIdentityDescription
GLGC_SYNP62.569e-3355.37Glucose-1-phosphate adenylyltransferase OS=Synecho... [more]
GLGC_SYNE72.569e-3355.37Glucose-1-phosphate adenylyltransferase OS=Synecho... [more]
GLGC_CYAP82.569e-3350.82Glucose-1-phosphate adenylyltransferase OS=Cyanoth... [more]
GLGL3_SOLTU1.275e-3253.28Glucose-1-phosphate adenylyltransferase large subu... [more]
GLGL1_ARATH2.175e-3250.82Glucose-1-phosphate adenylyltransferase large subu... [more]
GLGL1_SOLTU2.841e-3250.00Glucose-1-phosphate adenylyltransferase large subu... [more]
GLGL1_WHEAT1.410e-3150.00Glucose-1-phosphate adenylyltransferase large subu... [more]
GLGL2_SOLTU5.357e-3148.36Glucose-1-phosphate adenylyltransferase large subu... [more]
GLGL2_ARATH9.138e-3147.06Glucose-1-phosphate adenylyltransferase large subu... [more]
GLGL1_BETVU1.193e-3047.54Glucose-1-phosphate adenylyltransferase large subu... [more]

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Properties
Property NameValue
Genbank descriptionC05141C02SK FerrChloL1 Citrus clementina cDNA clone C05141C02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX296454 ID=CX296454; Name=CX296454; organism=Citrus clementina; type=EST; length=429bp
GAGGCTGATAGTGTAATTGGTGAAGGCTGTGTGATTAAGAATTGCAAAAT
TCACCATTCTGTTGTTGGGCTTCGATCTTGCATATCAGAAGGTGCAATTA
TCGAAGATACTTTACTTATGGGAGCAGATTATTATGAGACGGATGCGGAC
AGGAGGTTTTTGGCTGCAAAGGGTAGTGTTCCAATTGGTATTGGCAAGAA
TTCTCACATCAAGAGAGCAATAATCGACAAAAATGCTCGAATTGGGGATA
ATGTGAAGATCGTCAACAGTGACAGTGTGCAAGAAGCAGCAAGGGAAACA
GATGGATACTTCATCAAGAGCGGGATTGTCACAATAATCAAGGATGCCTT
GATTCCCAGTGGAACCATAATCTAAACTGTCGTCTTCTCTTCTCAGTTTC
ATCCCAAGCTACGGGCACCTTCCCCTCTA
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