CX296468

Overview
NameCX296468
Unique NameCX296468
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length666
Libraries
Library NameType
FerrChloL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CX296468 vs. ExPASy Swiss-Prot
Match: RS9_BARHE (30S ribosomal protein S9 OS=Bartonella henselae GN=rpsI PE=3 SV=1)

HSP 1 Score: 112.849 bits (281), Expect = 1.578e-24
Identity = 61/104 (58.65%), Postives = 73/104 (70.19%), Query Frame = -2 
Query:  342 KIHVNDKEFDVYFPMLDHRAALLRPFSETKTLGLWDVDCTVKGGGVSGQVGAVRLGISRALQNWEPDLRPALRSAGFLTRDSRVVERKKPGKAKARKSFQWVKR 653
            KI +N+KEFD YF     R  L +P   T     +D+  TV GGG+SGQ GAVR GIS+AL  +EP+LR  L+  GFLTRDSRVVERKK GKAKAR+SFQ+ KR
Sbjct:   58 KITINNKEFDKYFARPVLRMILRQPIVATNRDTQFDIIATVAGGGLSGQAGAVRHGISKALTYYEPELRTILKKGGFLTRDSRVVERKKYGKAKARRSFQFSKR 161
[Close]
BLAST of CX296468 vs. ExPASy Swiss-Prot
Match: RS9_RHILO (30S ribosomal protein S9 OS=Rhizobium loti GN=rpsI PE=3 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 3.515e-24
Identity = 61/104 (58.65%), Postives = 72/104 (69.23%), Query Frame = -2 
Query:  342 KIHVNDKEFDVYFPMLDHRAALLRPFSETKTLGLWDVDCTVKGGGVSGQVGAVRLGISRALQNWEPDLRPALRSAGFLTRDSRVVERKKPGKAKARKSFQWVKR 653
            KI VNDKEF  YF     +  L +P   +   G +D+  TV GGG+SGQ GAVR GIS+AL  +EP LR  L+  GFLTRDSRVVERKK GKAKAR+SFQ+ KR
Sbjct:   57 KIVVNDKEFATYFARPVLQMILNQPIIASNRSGQYDIVATVVGGGLSGQAGAVRHGISKALTYYEPALRAVLKKGGFLTRDSRVVERKKYGKAKARRSFQFSKR 160
[Close]
BLAST of CX296468 vs. ExPASy Swiss-Prot
Match: RS9_OLICO (30S ribosomal protein S9 OS=Oligotropha carboxidovorans (strain ATCC 49405 / DSM 1227 / OM5) GN=rpsI PE=3 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 3.515e-24
Identity = 60/104 (57.69%), Postives = 73/104 (70.19%), Query Frame = -2 
Query:  342 KIHVNDKEFDVYFPMLDHRAALLRPFSETKTLGLWDVDCTVKGGGVSGQVGAVRLGISRALQNWEPDLRPALRSAGFLTRDSRVVERKKPGKAKARKSFQWVKR 653
            KI VN ++ +VYF     R  + +P       G +DV  TV GGG+SGQ GAVR GIS+AL ++EPDLR  L+  GFLTRDSRVVERKK GKAKAR+SFQ+ KR
Sbjct:   55 KIVVNTRDVEVYFARPVLRMLIQQPIVAAARQGQYDVVATVAGGGLSGQAGAVRHGISKALTHFEPDLRGVLKKGGFLTRDSRVVERKKYGKAKARRSFQFSKR 158
[Close]
BLAST of CX296468 vs. ExPASy Swiss-Prot
Match: RS9_LACLS (30S ribosomal protein S9 OS=Lactococcus lactis subsp. cremoris (strain SK11) GN=rpsI PE=3 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 7.830e-24
Identity = 57/104 (54.81%), Postives = 72/104 (69.23%), Query Frame = -2 
Query:  342 KIHVNDKEFDVYFPMLDHRAALLRPFSETKTLGLWDVDCTVKGGGVSGQVGAVRLGISRALQNWEPDLRPALRSAGFLTRDSRVVERKKPGKAKARKSFQWVKR 653
            KI VN +E + Y P  D R  + +PF+ T+T G +D    V GGGVSGQ GA+R GI+RAL   +PD R AL+ AG LTRD+R+VERKKPG  KARK+ Q+ KR
Sbjct:   27 KITVNGREVESYIPHADMRLVINQPFAATQTEGSYDTLVNVNGGGVSGQAGAIRHGIARALLQVDPDFRSALKRAGLLTRDARMVERKKPGLKKARKASQFSKR 130
[Close]
BLAST of CX296468 vs. ExPASy Swiss-Prot
Match: RS9_LACLM (30S ribosomal protein S9 OS=Lactococcus lactis subsp. cremoris (strain MG1363) GN=rpsI PE=3 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 7.830e-24
Identity = 57/104 (54.81%), Postives = 72/104 (69.23%), Query Frame = -2 
Query:  342 KIHVNDKEFDVYFPMLDHRAALLRPFSETKTLGLWDVDCTVKGGGVSGQVGAVRLGISRALQNWEPDLRPALRSAGFLTRDSRVVERKKPGKAKARKSFQWVKR 653
            KI VN +E + Y P  D R  + +PF+ T+T G +D    V GGGVSGQ GA+R GI+RAL   +PD R AL+ AG LTRD+R+VERKKPG  KARK+ Q+ KR
Sbjct:   27 KITVNGREVESYIPHADMRLVINQPFAATQTEGSYDTLVNVNGGGVSGQAGAIRHGIARALLQVDPDFRSALKRAGLLTRDARMVERKKPGLKKARKASQFSKR 130
[Close]
BLAST of CX296468 vs. ExPASy Swiss-Prot
Match: RS9_LACLA (30S ribosomal protein S9 OS=Lactococcus lactis subsp. lactis GN=rpsI PE=3 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 7.830e-24
Identity = 57/104 (54.81%), Postives = 72/104 (69.23%), Query Frame = -2 
Query:  342 KIHVNDKEFDVYFPMLDHRAALLRPFSETKTLGLWDVDCTVKGGGVSGQVGAVRLGISRALQNWEPDLRPALRSAGFLTRDSRVVERKKPGKAKARKSFQWVKR 653
            KI VN +E + Y P  D R  + +PF+ T+T G +D    V GGGVSGQ GA+R GI+RAL   +PD R AL+ AG LTRD+R+VERKKPG  KARK+ Q+ KR
Sbjct:   27 KITVNGREVESYIPHADMRLVINQPFAATQTEGSYDTLVNVNGGGVSGQAGAIRHGIARALLQVDPDFRSALKRAGLLTRDARMVERKKPGLKKARKASQFSKR 130
[Close]
BLAST of CX296468 vs. ExPASy Swiss-Prot
Match: RS9_ANATD (30S ribosomal protein S9 OS=Anaerocellum thermophilum (strain DSM 6725 / Z-1320) GN=rpsI PE=3 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 1.023e-23
Identity = 59/104 (56.73%), Postives = 74/104 (71.15%), Query Frame = -2 
Query:  342 KIHVNDKEFDVYFPMLDHRAALLRPFSETKTLGLWDVDCTVKGGGVSGQVGAVRLGISRALQNWEPDLRPALRSAGFLTRDSRVVERKKPGKAKARKSFQWVKR 653
            KI VNDK  + YFP+   R  + +P + T+TLG +DV   VKGGG+SGQ GAVR GI+RAL   +P LRP L+ AGFLTRD R+VERKK G  KAR++ Q+ KR
Sbjct:   27 KIIVNDKNMEEYFPLETLRIIVKQPLTLTETLGKYDVIAKVKGGGLSGQAGAVRHGIARALVLADPTLRPVLKKAGFLTRDPRMVERKKYGLKKARRAPQFSKR 130
[Close]
BLAST of CX296468 vs. ExPASy Swiss-Prot
Match: RS9_RICFE (30S ribosomal protein S9 OS=Rickettsia felis GN=rpsI PE=3 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 1.336e-23
Identity = 58/104 (55.77%), Postives = 69/104 (66.35%), Query Frame = -2 
Query:  342 KIHVNDKEFDVYFPMLDHRAALLRPFSETKTLGLWDVDCTVKGGGVSGQVGAVRLGISRALQNWEPDLRPALRSAGFLTRDSRVVERKKPGKAKARKSFQWVKR 653
            KI VN K  D YFP   +   +L+PF  TKT+  +DV CTV+GGG+SGQ GA+  GIS+AL    PD    LR  G LTRDSRVVERKK G+ KARK  Q+ KR
Sbjct:   58 KIVVNKKTIDQYFPSETYVKTILQPFVLTKTIDQYDVICTVRGGGISGQKGAILHGISKALDKSAPDFHAILRKGGLLTRDSRVVERKKYGQRKARKKTQFSKR 161
[Close]
BLAST of CX296468 vs. ExPASy Swiss-Prot
Match: RS9_RHIME (30S ribosomal protein S9 OS=Rhizobium meliloti GN=rpsI PE=3 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 1.336e-23
Identity = 59/104 (56.73%), Postives = 71/104 (68.27%), Query Frame = -2 
Query:  342 KIHVNDKEFDVYFPMLDHRAALLRPFSETKTLGLWDVDCTVKGGGVSGQVGAVRLGISRALQNWEPDLRPALRSAGFLTRDSRVVERKKPGKAKARKSFQWVKR 653
            KI +N K F  YF     +  L +P       G +D+D TV GGG+SGQ GAVR GIS+AL  +EP LRP L+  GFLTRDSRVVERKK G+AKAR+SFQ+ KR
Sbjct:   52 KITINGKPFSDYFARPVLQMILQQPVVAAARDGQFDIDATVAGGGLSGQAGAVRHGISKALTYFEPGLRPVLKRGGFLTRDSRVVERKKYGRAKARRSFQFSKR 155
[Close]
BLAST of CX296468 vs. ExPASy Swiss-Prot
Match: RS9_BARBK (30S ribosomal protein S9 OS=Bartonella bacilliformis (strain ATCC 35685 / KC583) GN=rpsI PE=3 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 1.336e-23
Identity = 61/104 (58.65%), Postives = 72/104 (69.23%), Query Frame = -2 
Query:  342 KIHVNDKEFDVYFPMLDHRAALLRPFSETKTLGLWDVDCTVKGGGVSGQVGAVRLGISRALQNWEPDLRPALRSAGFLTRDSRVVERKKPGKAKARKSFQWVKR 653
            KI VN+KEF+ YF     R  L +P    K    +DV  TV GGG+SGQ GA+R GIS+AL  +EP LR  L+  GFLTRDSRVVERKK GKAKAR+SFQ+ KR
Sbjct:   58 KITVNNKEFEQYFARPVLRMILRQPIVIAKRDTQYDVVATVAGGGLSGQAGAIRHGISKALTYYEPALRTILKKGGFLTRDSRVVERKKYGKAKARRSFQFSKR 161
The following BLAST results are available for this feature:
BLAST of CX296468 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RS9_BARHE1.578e-2458.6530S ribosomal protein S9 OS=Bartonella henselae GN... [more]
RS9_RHILO3.515e-2458.6530S ribosomal protein S9 OS=Rhizobium loti GN=rpsI... [more]
RS9_OLICO3.515e-2457.6930S ribosomal protein S9 OS=Oligotropha carboxidov... [more]
RS9_LACLS7.830e-2454.8130S ribosomal protein S9 OS=Lactococcus lactis sub... [more]
RS9_LACLM7.830e-2454.8130S ribosomal protein S9 OS=Lactococcus lactis sub... [more]
RS9_LACLA7.830e-2454.8130S ribosomal protein S9 OS=Lactococcus lactis sub... [more]
RS9_ANATD1.023e-2356.7330S ribosomal protein S9 OS=Anaerocellum thermophi... [more]
RS9_RICFE1.336e-2355.7730S ribosomal protein S9 OS=Rickettsia felis GN=rp... [more]
RS9_RHIME1.336e-2356.7330S ribosomal protein S9 OS=Rhizobium meliloti GN=... [more]
RS9_BARBK1.336e-2358.6530S ribosomal protein S9 OS=Bartonella bacilliform... [more]

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Properties
Property NameValue
Genbank descriptionC05141D11SK FerrChloL1 Citrus clementina cDNA clone C05141D11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX296468 ID=CX296468; Name=CX296468; organism=Citrus clementina; type=EST; length=666bp
CAATCCTAATACTGTACGATCGTCCTTAAAGCGAAGACATTACAGTACTC
AACAGTCAACACCGAAATTCAGGGCTCAACAAATGCTCCTCTCTTGTATT
TGCACATAAAGATGACATAAGGGTACAAACTAGAAACAGTTTTGTTTAAC
AAATAAACTGCTCAAAAATCTTCACAGCTTTTCCATGACCGTGTGCGTAC
AGAAAGCAAGAAGCAGGGCGTGTTGAATGGACGTGCCCAGCCGGTTGGAT
ACTCTCAAGACTCGACAAGTTATTGCAATGAGGCAAAACTGAACTTCCAT
AGAACGTGGGCCATTGAAATGGAAGCCCCAATTGTCGATTAACGCTTAAC
CCATTGGAAGCTCTTTCTCGCTTTTGCCTTCCCTGGTTTTTTCCTTTCAA
CCACACGTGAATCTCTCGTCAAGAACCCAGCGGATCTGAGTGCAGGACGT
AGATCTGGTTCCCAATTTTGCAATGCCCTGCTGATCCCTAGCCTAACAGC
TCCAACTTGACCTGAAACGCCACCCCCTTTGACAGTACAATCGACATCCC
AAAGGCCCAAGGTCTTTGTCTCAGAGAAAGGTCGAAGAAGTGCAGCACGA
TGATCAAGCATTGGGAAATAGACGTCAAATTCTTTATCATTAACATGAAT
TTTCCATCACCAGGTT
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