CX296468

Overview
NameCX296468
Unique NameCX296468
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length666
Libraries
Library NameType
FerrChloL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX296468 vs. ExPASy Swiss-Prot
Match: RS9_RICAH (30S ribosomal protein S9 OS=Rickettsia akari (strain Hartford) GN=rpsI PE=3 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 1.744e-23
Identity = 59/104 (56.73%), Postives = 68/104 (65.38%), Query Frame = -2
Query:  342 KIHVNDKEFDVYFPMLDHRAALLRPFSETKTLGLWDVDCTVKGGGVSGQVGAVRLGISRALQNWEPDLRPALRSAGFLTRDSRVVERKKPGKAKARKSFQWVKR 653
            KI VN K  D YFP   +   +LRPF  T T+  +DV CTV+GGGVSGQ GA+  GIS+AL    PD    LR  G LTRDSRVVERKK G+ KARK  Q+ KR
Sbjct:   58 KIVVNKKTIDQYFPSETYVKTILRPFVLTNTIDQYDVICTVRGGGVSGQKGAILHGISKALDKSVPDFHTILRKGGLLTRDSRVVERKKYGQRKARKKTQFSKR 161          
BLAST of CX296468 vs. ExPASy Swiss-Prot
Match: RS9_CAUCR (30S ribosomal protein S9 OS=Caulobacter crescentus GN=rpsI PE=3 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 1.744e-23
Identity = 57/103 (55.34%), Postives = 73/103 (70.87%), Query Frame = -2
Query:  342 IHVNDKEFDVYFPMLDHRAALLRPFSETKTLGLWDVDCTVKGGGVSGQVGAVRLGISRALQNWEPDLRPALRSAGFLTRDSRVVERKKPGKAKARKSFQWVKR 650
            I +N ++ +VYF     R  + +P   T  LG +DV  TV+G G+SGQ GA+R G+S+AL  +EP LRP L+  GFLTRDSRVVERKK GKAKAR+SFQ+ KR
Sbjct:   55 ITINGRDQEVYFARPVLRMMIAQPLEVTDRLGQFDVVVTVEGSGLSGQAGAIRHGLSKALTYYEPGLRPVLKPHGFLTRDSRVVERKKYGKAKARRSFQFSKR 157          
BLAST of CX296468 vs. ExPASy Swiss-Prot
Match: RS9_CAUCN (30S ribosomal protein S9 OS=Caulobacter crescentus (strain NA1000 / CB15N) GN=rpsI PE=3 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 1.744e-23
Identity = 57/103 (55.34%), Postives = 73/103 (70.87%), Query Frame = -2
Query:  342 IHVNDKEFDVYFPMLDHRAALLRPFSETKTLGLWDVDCTVKGGGVSGQVGAVRLGISRALQNWEPDLRPALRSAGFLTRDSRVVERKKPGKAKARKSFQWVKR 650
            I +N ++ +VYF     R  + +P   T  LG +DV  TV+G G+SGQ GA+R G+S+AL  +EP LRP L+  GFLTRDSRVVERKK GKAKAR+SFQ+ KR
Sbjct:   55 ITINGRDQEVYFARPVLRMMIAQPLEVTDRLGQFDVVVTVEGSGLSGQAGAIRHGLSKALTYYEPGLRPVLKPHGFLTRDSRVVERKKYGKAKARRSFQFSKR 157          
BLAST of CX296468 vs. ExPASy Swiss-Prot
Match: RS9_BEII9 (30S ribosomal protein S9 OS=Beijerinckia indica subsp. indica (strain ATCC 9039 / DSM 1715 / NCIB 8712) GN=rpsI PE=3 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 1.744e-23
Identity = 57/104 (54.81%), Postives = 72/104 (69.23%), Query Frame = -2
Query:  342 KIHVNDKEFDVYFPMLDHRAALLRPFSETKTLGLWDVDCTVKGGGVSGQVGAVRLGISRALQNWEPDLRPALRSAGFLTRDSRVVERKKPGKAKARKSFQWVKR 653
            K+ VN +  DVYF     R  L +P    K +  +D+  TV GGG+SGQ GAVR G+++AL N+EP+LR AL+  GFLTRDSR VERKK GK KAR+SFQ+ KR
Sbjct:   56 KVTVNGRPLDVYFARPVLRMILQQPLGVAKRVDQYDLMVTVAGGGLSGQAGAVRHGLAKALVNYEPELRSALKKEGFLTRDSRTVERKKYGKKKARRSFQFSKR 159          
BLAST of CX296468 vs. ExPASy Swiss-Prot
Match: RS9_AGRT5 (30S ribosomal protein S9 OS=Agrobacterium tumefaciens (strain C58 / ATCC 33970) GN=rpsI PE=3 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 1.744e-23
Identity = 57/104 (54.81%), Postives = 71/104 (68.27%), Query Frame = -2
Query:  342 KIHVNDKEFDVYFPMLDHRAALLRPFSETKTLGLWDVDCTVKGGGVSGQVGAVRLGISRALQNWEPDLRPALRSAGFLTRDSRVVERKKPGKAKARKSFQWVKR 653
            KI +N ++F  YF     +  L +P       G +D+  TV GGG+SGQ GAVR G+S+AL  +EP LRP L+  GFLTRDSRVVERKK GKAKAR+SFQ+ KR
Sbjct:   52 KIIINGRDFTTYFARPVLQMILQQPLVAAARAGQFDIIATVAGGGLSGQAGAVRHGVSKALTYFEPGLRPVLKKGGFLTRDSRVVERKKYGKAKARRSFQFSKR 155          
BLAST of CX296468 vs. ExPASy Swiss-Prot
Match: RS9_AGRVS (30S ribosomal protein S9 OS=Agrobacterium vitis (strain S4 / ATCC BAA-846) GN=rpsI PE=3 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 2.278e-23
Identity = 60/104 (57.69%), Postives = 71/104 (68.27%), Query Frame = -2
Query:  342 KIHVNDKEFDVYFPMLDHRAALLRPFSETKTLGLWDVDCTVKGGGVSGQVGAVRLGISRALQNWEPDLRPALRSAGFLTRDSRVVERKKPGKAKARKSFQWVKR 653
            KI VN ++F VYF     +  L +P       G +DV  TV GGG+SGQ GAVR GIS+AL  +EP LR  L+  GFLTRDSRVVERKK GKAKAR+SFQ+ KR
Sbjct:   52 KITVNGRDFPVYFARPVLQMILQQPVVAAARTGQFDVIATVTGGGLSGQAGAVRHGISKALTYFEPGLRSVLKKGGFLTRDSRVVERKKYGKAKARRSFQFSKR 155          
BLAST of CX296468 vs. ExPASy Swiss-Prot
Match: RS9_BARQU (30S ribosomal protein S9 OS=Bartonella quintana GN=rpsI PE=3 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 2.975e-23
Identity = 59/104 (56.73%), Postives = 71/104 (68.27%), Query Frame = -2
Query:  342 KIHVNDKEFDVYFPMLDHRAALLRPFSETKTLGLWDVDCTVKGGGVSGQVGAVRLGISRALQNWEPDLRPALRSAGFLTRDSRVVERKKPGKAKARKSFQWVKR 653
            KI +N+KEFD YF     R  L +P         +D+  TV GGG+SGQ GAVR GIS+AL  +EP+ R  L+  GFLTRDSRVVERKK GKAKAR+SFQ+ KR
Sbjct:   58 KITINNKEFDKYFARPVLRMILRQPIVAINRDTQFDIIATVTGGGLSGQAGAVRHGISKALTYYEPEFRTILKKRGFLTRDSRVVERKKYGKAKARRSFQFSKR 161          
BLAST of CX296468 vs. ExPASy Swiss-Prot
Match: RS9_STRGC (30S ribosomal protein S9 OS=Streptococcus gordonii (strain Challis / ATCC 35105 / CH1 / DL1 / V288) GN=rpsI PE=3 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 3.886e-23
Identity = 55/104 (52.88%), Postives = 71/104 (68.27%), Query Frame = -2
Query:  342 KIHVNDKEFDVYFPMLDHRAALLRPFSETKTLGLWDVDCTVKGGGVSGQVGAVRLGISRALQNWEPDLRPALRSAGFLTRDSRVVERKKPGKAKARKSFQWVKR 653
            KI VN K+ + Y P  D R  + +PF+ T T+G +DV   V GGG  GQ GA+R GI+RAL   +PD R +L+ AG LTRD+R+VERKKPG  KARK+ Q+ KR
Sbjct:   27 KITVNKKDVEEYIPHADLRLVINQPFAVTSTVGQYDVFVNVNGGGYGGQAGAIRHGIARALLQVDPDFRDSLKRAGLLTRDARMVERKKPGLKKARKASQFSKR 130          
BLAST of CX296468 vs. ExPASy Swiss-Prot
Match: RS9_RICRS (30S ribosomal protein S9 OS=Rickettsia rickettsii (strain Sheila Smith) GN=rpsI PE=3 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 3.886e-23
Identity = 57/104 (54.81%), Postives = 69/104 (66.35%), Query Frame = -2
Query:  342 KIHVNDKEFDVYFPMLDHRAALLRPFSETKTLGLWDVDCTVKGGGVSGQVGAVRLGISRALQNWEPDLRPALRSAGFLTRDSRVVERKKPGKAKARKSFQWVKR 653
            KI VN K    YFP   +   +L+PF  TKT+  +D+ CTV+GGG+SGQ GA+  GIS+AL    PD R  LR  G LTRDSRVVERKK G+ KARK  Q+ KR
Sbjct:   56 KIVVNKKTIAQYFPSETYVKTILQPFVLTKTIDQYDIICTVRGGGISGQKGAILHGISKALDKSAPDFRAILRKGGLLTRDSRVVERKKYGQRKARKKTQFSKR 159          
BLAST of CX296468 vs. ExPASy Swiss-Prot
Match: RS9_RICRO (30S ribosomal protein S9 OS=Rickettsia rickettsii (strain Iowa) GN=rpsI PE=3 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 3.886e-23
Identity = 57/104 (54.81%), Postives = 69/104 (66.35%), Query Frame = -2
Query:  342 KIHVNDKEFDVYFPMLDHRAALLRPFSETKTLGLWDVDCTVKGGGVSGQVGAVRLGISRALQNWEPDLRPALRSAGFLTRDSRVVERKKPGKAKARKSFQWVKR 653
            KI VN K    YFP   +   +L+PF  TKT+  +D+ CTV+GGG+SGQ GA+  GIS+AL    PD R  LR  G LTRDSRVVERKK G+ KARK  Q+ KR
Sbjct:   56 KIVVNKKTIAQYFPSETYVKTILQPFVLTKTIDQYDIICTVRGGGISGQKGAILHGISKALDKSAPDFRAILRKGGLLTRDSRVVERKKYGQRKARKKTQFSKR 159          
The following BLAST results are available for this feature:
BLAST of CX296468 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RS9_RICAH1.744e-2356.7330S ribosomal protein S9 OS=Rickettsia akari (stra... [more]
RS9_CAUCR1.744e-2355.3430S ribosomal protein S9 OS=Caulobacter crescentus... [more]
RS9_CAUCN1.744e-2355.3430S ribosomal protein S9 OS=Caulobacter crescentus... [more]
RS9_BEII91.744e-2354.8130S ribosomal protein S9 OS=Beijerinckia indica su... [more]
RS9_AGRT51.744e-2354.8130S ribosomal protein S9 OS=Agrobacterium tumefaci... [more]
RS9_AGRVS2.278e-2357.6930S ribosomal protein S9 OS=Agrobacterium vitis (s... [more]
RS9_BARQU2.975e-2356.7330S ribosomal protein S9 OS=Bartonella quintana GN... [more]
RS9_STRGC3.886e-2352.8830S ribosomal protein S9 OS=Streptococcus gordonii... [more]
RS9_RICRS3.886e-2354.8130S ribosomal protein S9 OS=Rickettsia rickettsii ... [more]
RS9_RICRO3.886e-2354.8130S ribosomal protein S9 OS=Rickettsia rickettsii ... [more]

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Properties
Property NameValue
Genbank descriptionC05141D11SK FerrChloL1 Citrus clementina cDNA clone C05141D11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX296468 ID=CX296468; Name=CX296468; organism=Citrus clementina; type=EST; length=666bp
CAATCCTAATACTGTACGATCGTCCTTAAAGCGAAGACATTACAGTACTC
AACAGTCAACACCGAAATTCAGGGCTCAACAAATGCTCCTCTCTTGTATT
TGCACATAAAGATGACATAAGGGTACAAACTAGAAACAGTTTTGTTTAAC
AAATAAACTGCTCAAAAATCTTCACAGCTTTTCCATGACCGTGTGCGTAC
AGAAAGCAAGAAGCAGGGCGTGTTGAATGGACGTGCCCAGCCGGTTGGAT
ACTCTCAAGACTCGACAAGTTATTGCAATGAGGCAAAACTGAACTTCCAT
AGAACGTGGGCCATTGAAATGGAAGCCCCAATTGTCGATTAACGCTTAAC
CCATTGGAAGCTCTTTCTCGCTTTTGCCTTCCCTGGTTTTTTCCTTTCAA
CCACACGTGAATCTCTCGTCAAGAACCCAGCGGATCTGAGTGCAGGACGT
AGATCTGGTTCCCAATTTTGCAATGCCCTGCTGATCCCTAGCCTAACAGC
TCCAACTTGACCTGAAACGCCACCCCCTTTGACAGTACAATCGACATCCC
AAAGGCCCAAGGTCTTTGTCTCAGAGAAAGGTCGAAGAAGTGCAGCACGA
TGATCAAGCATTGGGAAATAGACGTCAAATTCTTTATCATTAACATGAAT
TTTCCATCACCAGGTT
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