CX296468
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CX296468 vs. ExPASy Swiss-Prot
Match: RS9_STRM5 (30S ribosomal protein S9 OS=Stenotrophomonas maltophilia (strain R551-3) GN=rpsI PE=3 SV=1) HSP 1 Score: 88.1965 bits (217), Expect = 4.162e-17 Identity = 47/103 (45.63%), Postives = 64/103 (62.14%), Query Frame = -2 Query: 342 IHVNDKEFDVYFPMLDHRAALLRPFSETKTLGLWDVDCTVKGGGVSGQVGAVRLGISRALQNWEPDLRPALRSAGFLTRDSRVVERKKPGKAKARKSFQWVKR 650 I VN + D +F R + +P TK +D+ T GGG +GQ GA+RLGI+RAL ++ L+ LR AGF+TRD+R VERKK G KAR++ Q+ KR Sbjct: 28 ITVNGRPLDEFFGRETARMIVRQPLELTKNTESFDILVTAAGGGTTGQAGAIRLGIARALVEYDETLKSELRKAGFMTRDAREVERKKVGLHKARRATQFSKR 130
BLAST of CX296468 vs. ExPASy Swiss-Prot
Match: RS9_STAHJ (30S ribosomal protein S9 OS=Staphylococcus haemolyticus (strain JCSC1435) GN=rpsI PE=3 SV=1) HSP 1 Score: 88.1965 bits (217), Expect = 4.162e-17 Identity = 49/103 (47.57%), Postives = 65/103 (63.11%), Query Frame = -2 Query: 342 IHVNDKEFDVYFPMLDHRAALLRPFSETKTLGLWDVDCTVKGGGVSGQVGAVRLGISRALQNWEPDLRPALRSAGFLTRDSRVVERKKPGKAKARKSFQWVKR 650 I VN+++ Y P L +PF T+T G +DV V GGG +GQ A+R GI+RAL +P+ R +L+ AG LTRD R+ ERKKPG KAR+S Q+ KR Sbjct: 28 ITVNERDVREYLPFESLILDLNQPFDVTETKGNYDVLVNVHGGGFTGQAQAIRHGIARALLEADPEYRGSLKRAGLLTRDPRMKERKKPGLKKARRSPQFSKR 130
BLAST of CX296468 vs. ExPASy Swiss-Prot
Match: RS9_SHEHH (30S ribosomal protein S9 OS=Shewanella halifaxensis (strain HAW-EB4) GN=rpsI PE=3 SV=1) HSP 1 Score: 88.1965 bits (217), Expect = 4.162e-17 Identity = 49/103 (47.57%), Postives = 63/103 (61.17%), Query Frame = -2 Query: 342 IHVNDKEFDVYFPMLDHRAALLRPFSETKTLGLWDVDCTVKGGGVSGQVGAVRLGISRALQNWEPDLRPALRSAGFLTRDSRVVERKKPGKAKARKSFQWVKR 650 I VN D YF R + +P + D+ TVKGGG +GQ GA+R GI+RAL + LRP+LR+AGF+TRD+R VERKK G KAR+ Q+ KR Sbjct: 28 IIVNKLPLDEYFGRETSRMVVRQPLELVEMTDKLDIMVTVKGGGNTGQAGAIRHGITRALMELDESLRPSLRAAGFVTRDARKVERKKVGLRKARRKPQFSKR 130
BLAST of CX296468 vs. ExPASy Swiss-Prot
Match: RS9_RUBXD (30S ribosomal protein S9 OS=Rubrobacter xylanophilus (strain DSM 9941 / NBRC 16129) GN=rpsI PE=3 SV=1) HSP 1 Score: 88.1965 bits (217), Expect = 4.162e-17 Identity = 47/104 (45.19%), Postives = 64/104 (61.54%), Query Frame = -2 Query: 342 KIHVNDKEFDVYFPMLDHRAALLRPFSETKTLGLWDVDCTVKGGGVSGQVGAVRLGISRALQNWEPDLRPALRSAGFLTRDSRVVERKKPGKAKARKSFQWVKR 653 +I VN + + YFP + H+ A+ P G +DV ++GGG +GQ A+R GI+RAL P+ R L++AG LTRD+R VERKK G KARK Q+ KR Sbjct: 27 RITVNGRPVEEYFPRVTHQRAVRAPLELLDAAGRYDVVAKIEGGGPTGQAEALRHGIARALAEESPEARGELKAAGLLTRDARAVERKKYGLKKARKRPQFSKR 130
BLAST of CX296468 vs. ExPASy Swiss-Prot
Match: RS9_RHOE4 (30S ribosomal protein S9 OS=Rhodococcus erythropolis (strain PR4 / NBRC 100887) GN=rpsI PE=3 SV=1) HSP 1 Score: 88.1965 bits (217), Expect = 4.162e-17 Identity = 48/101 (47.52%), Postives = 63/101 (62.38%), Query Frame = -2 Query: 342 VNDKEFDVYFPMLDHRAALLRPFSETKTLGLWDVDCTVKGGGVSGQVGAVRLGISRALQNWEPDLRPALRSAGFLTRDSRVVERKKPGKAKARKSFQWVKR 644 +N + + YFP H+ + P + +D+ + GGG SGQ GA+RL I+RAL PD RPAL+ AGFLTRD+R VERKK G KARK+ Q+ KR Sbjct: 70 LNGRTLEDYFPNKVHQQLIKAPLVLVERPESFDIIALLHGGGPSGQAGALRLAIARALIEVTPDDRPALKRAGFLTRDARAVERKKYGLKKARKASQYSKR 170
BLAST of CX296468 vs. ExPASy Swiss-Prot
Match: RS9_MYCUA (30S ribosomal protein S9 OS=Mycobacterium ulcerans (strain Agy99) GN=rpsI PE=3 SV=1) HSP 1 Score: 88.1965 bits (217), Expect = 4.162e-17 Identity = 48/104 (46.15%), Postives = 62/104 (59.62%), Query Frame = -2 Query: 342 KIHVNDKEFDVYFPMLDHRAALLRPFSETKTLGLWDVDCTVKGGGVSGQVGAVRLGISRALQNWEPDLRPALRSAGFLTRDSRVVERKKPGKAKARKSFQWVKR 653 K +N + + YFP H+ + P L +D+ + GGG SGQ GA+RLGI+RAL P+ RPAL+ A FLTRD R ERKK G KARK+ Q+ KR Sbjct: 49 KFDLNGRSLEAYFPNKVHQQLIKAPLVTVDRLESYDIFALLHGGGPSGQAGALRLGIARALIVANPEDRPALKKACFLTRDPRATERKKYGLKKARKAPQYSKR 152
BLAST of CX296468 vs. ExPASy Swiss-Prot
Match: RS9_MYCTU (30S ribosomal protein S9 OS=Mycobacterium tuberculosis GN=rpsI PE=3 SV=1) HSP 1 Score: 88.1965 bits (217), Expect = 4.162e-17 Identity = 48/104 (46.15%), Postives = 63/104 (60.58%), Query Frame = -2 Query: 342 KIHVNDKEFDVYFPMLDHRAALLRPFSETKTLGLWDVDCTVKGGGVSGQVGAVRLGISRALQNWEPDLRPALRSAGFLTRDSRVVERKKPGKAKARKSFQWVKR 653 K +N + + YFP H+ + P + +D+ + GGG SGQ GA+RLGI+RAL P+ RPAL+ AGFLTRD R ERKK G KARK+ Q+ KR Sbjct: 48 KFDLNGRSLEDYFPNKVHQQLIKAPLVTVDRVESFDIFAHLGGGGPSGQAGALRLGIARALILVSPEDRPALKKAGFLTRDPRATERKKYGLKKARKAPQYSKR 151
BLAST of CX296468 vs. ExPASy Swiss-Prot
Match: RS9_MYCTA (30S ribosomal protein S9 OS=Mycobacterium tuberculosis (strain ATCC 25177 / H37Ra) GN=rpsI PE=3 SV=1) HSP 1 Score: 88.1965 bits (217), Expect = 4.162e-17 Identity = 48/104 (46.15%), Postives = 63/104 (60.58%), Query Frame = -2 Query: 342 KIHVNDKEFDVYFPMLDHRAALLRPFSETKTLGLWDVDCTVKGGGVSGQVGAVRLGISRALQNWEPDLRPALRSAGFLTRDSRVVERKKPGKAKARKSFQWVKR 653 K +N + + YFP H+ + P + +D+ + GGG SGQ GA+RLGI+RAL P+ RPAL+ AGFLTRD R ERKK G KARK+ Q+ KR Sbjct: 48 KFDLNGRSLEDYFPNKVHQQLIKAPLVTVDRVESFDIFAHLGGGGPSGQAGALRLGIARALILVSPEDRPALKKAGFLTRDPRATERKKYGLKKARKAPQYSKR 151
BLAST of CX296468 vs. ExPASy Swiss-Prot
Match: RS9_MYCBT (30S ribosomal protein S9 OS=Mycobacterium bovis (strain BCG / Tokyo 172 / ATCC 35737 / TMC 1019) GN=rpsI PE=3 SV=1) HSP 1 Score: 88.1965 bits (217), Expect = 4.162e-17 Identity = 48/104 (46.15%), Postives = 63/104 (60.58%), Query Frame = -2 Query: 342 KIHVNDKEFDVYFPMLDHRAALLRPFSETKTLGLWDVDCTVKGGGVSGQVGAVRLGISRALQNWEPDLRPALRSAGFLTRDSRVVERKKPGKAKARKSFQWVKR 653 K +N + + YFP H+ + P + +D+ + GGG SGQ GA+RLGI+RAL P+ RPAL+ AGFLTRD R ERKK G KARK+ Q+ KR Sbjct: 48 KFDLNGRSLEDYFPNKVHQQLIKAPLVTVDRVESFDIFAHLGGGGPSGQAGALRLGIARALILVSPEDRPALKKAGFLTRDPRATERKKYGLKKARKAPQYSKR 151
BLAST of CX296468 vs. ExPASy Swiss-Prot
Match: RS9_MYCBP (30S ribosomal protein S9 OS=Mycobacterium bovis (strain BCG / Pasteur 1173P2) GN=rpsI PE=3 SV=1) HSP 1 Score: 88.1965 bits (217), Expect = 4.162e-17 Identity = 48/104 (46.15%), Postives = 63/104 (60.58%), Query Frame = -2 Query: 342 KIHVNDKEFDVYFPMLDHRAALLRPFSETKTLGLWDVDCTVKGGGVSGQVGAVRLGISRALQNWEPDLRPALRSAGFLTRDSRVVERKKPGKAKARKSFQWVKR 653 K +N + + YFP H+ + P + +D+ + GGG SGQ GA+RLGI+RAL P+ RPAL+ AGFLTRD R ERKK G KARK+ Q+ KR Sbjct: 48 KFDLNGRSLEDYFPNKVHQQLIKAPLVTVDRVESFDIFAHLGGGGPSGQAGALRLGIARALILVSPEDRPALKKAGFLTRDPRATERKKYGLKKARKAPQYSKR 151 The following BLAST results are available for this feature:
BLAST of CX296468 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 500
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Sequences
The
following sequences are available for this feature:
EST sequence >CX296468 ID=CX296468; Name=CX296468; organism=Citrus clementina; type=EST; length=666bpback to top |