CX296468

Overview
NameCX296468
Unique NameCX296468
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length666
Libraries
Library NameType
FerrChloL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX296468 vs. ExPASy Swiss-Prot
Match: RS9_STRM5 (30S ribosomal protein S9 OS=Stenotrophomonas maltophilia (strain R551-3) GN=rpsI PE=3 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 4.162e-17
Identity = 47/103 (45.63%), Postives = 64/103 (62.14%), Query Frame = -2
Query:  342 IHVNDKEFDVYFPMLDHRAALLRPFSETKTLGLWDVDCTVKGGGVSGQVGAVRLGISRALQNWEPDLRPALRSAGFLTRDSRVVERKKPGKAKARKSFQWVKR 650
            I VN +  D +F     R  + +P   TK    +D+  T  GGG +GQ GA+RLGI+RAL  ++  L+  LR AGF+TRD+R VERKK G  KAR++ Q+ KR
Sbjct:   28 ITVNGRPLDEFFGRETARMIVRQPLELTKNTESFDILVTAAGGGTTGQAGAIRLGIARALVEYDETLKSELRKAGFMTRDAREVERKKVGLHKARRATQFSKR 130          
BLAST of CX296468 vs. ExPASy Swiss-Prot
Match: RS9_STAHJ (30S ribosomal protein S9 OS=Staphylococcus haemolyticus (strain JCSC1435) GN=rpsI PE=3 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 4.162e-17
Identity = 49/103 (47.57%), Postives = 65/103 (63.11%), Query Frame = -2
Query:  342 IHVNDKEFDVYFPMLDHRAALLRPFSETKTLGLWDVDCTVKGGGVSGQVGAVRLGISRALQNWEPDLRPALRSAGFLTRDSRVVERKKPGKAKARKSFQWVKR 650
            I VN+++   Y P       L +PF  T+T G +DV   V GGG +GQ  A+R GI+RAL   +P+ R +L+ AG LTRD R+ ERKKPG  KAR+S Q+ KR
Sbjct:   28 ITVNERDVREYLPFESLILDLNQPFDVTETKGNYDVLVNVHGGGFTGQAQAIRHGIARALLEADPEYRGSLKRAGLLTRDPRMKERKKPGLKKARRSPQFSKR 130          
BLAST of CX296468 vs. ExPASy Swiss-Prot
Match: RS9_SHEHH (30S ribosomal protein S9 OS=Shewanella halifaxensis (strain HAW-EB4) GN=rpsI PE=3 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 4.162e-17
Identity = 49/103 (47.57%), Postives = 63/103 (61.17%), Query Frame = -2
Query:  342 IHVNDKEFDVYFPMLDHRAALLRPFSETKTLGLWDVDCTVKGGGVSGQVGAVRLGISRALQNWEPDLRPALRSAGFLTRDSRVVERKKPGKAKARKSFQWVKR 650
            I VN    D YF     R  + +P    +     D+  TVKGGG +GQ GA+R GI+RAL   +  LRP+LR+AGF+TRD+R VERKK G  KAR+  Q+ KR
Sbjct:   28 IIVNKLPLDEYFGRETSRMVVRQPLELVEMTDKLDIMVTVKGGGNTGQAGAIRHGITRALMELDESLRPSLRAAGFVTRDARKVERKKVGLRKARRKPQFSKR 130          
BLAST of CX296468 vs. ExPASy Swiss-Prot
Match: RS9_RUBXD (30S ribosomal protein S9 OS=Rubrobacter xylanophilus (strain DSM 9941 / NBRC 16129) GN=rpsI PE=3 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 4.162e-17
Identity = 47/104 (45.19%), Postives = 64/104 (61.54%), Query Frame = -2
Query:  342 KIHVNDKEFDVYFPMLDHRAALLRPFSETKTLGLWDVDCTVKGGGVSGQVGAVRLGISRALQNWEPDLRPALRSAGFLTRDSRVVERKKPGKAKARKSFQWVKR 653
            +I VN +  + YFP + H+ A+  P       G +DV   ++GGG +GQ  A+R GI+RAL    P+ R  L++AG LTRD+R VERKK G  KARK  Q+ KR
Sbjct:   27 RITVNGRPVEEYFPRVTHQRAVRAPLELLDAAGRYDVVAKIEGGGPTGQAEALRHGIARALAEESPEARGELKAAGLLTRDARAVERKKYGLKKARKRPQFSKR 130          
BLAST of CX296468 vs. ExPASy Swiss-Prot
Match: RS9_RHOE4 (30S ribosomal protein S9 OS=Rhodococcus erythropolis (strain PR4 / NBRC 100887) GN=rpsI PE=3 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 4.162e-17
Identity = 48/101 (47.52%), Postives = 63/101 (62.38%), Query Frame = -2
Query:  342 VNDKEFDVYFPMLDHRAALLRPFSETKTLGLWDVDCTVKGGGVSGQVGAVRLGISRALQNWEPDLRPALRSAGFLTRDSRVVERKKPGKAKARKSFQWVKR 644
            +N +  + YFP   H+  +  P    +    +D+   + GGG SGQ GA+RL I+RAL    PD RPAL+ AGFLTRD+R VERKK G  KARK+ Q+ KR
Sbjct:   70 LNGRTLEDYFPNKVHQQLIKAPLVLVERPESFDIIALLHGGGPSGQAGALRLAIARALIEVTPDDRPALKRAGFLTRDARAVERKKYGLKKARKASQYSKR 170          
BLAST of CX296468 vs. ExPASy Swiss-Prot
Match: RS9_MYCUA (30S ribosomal protein S9 OS=Mycobacterium ulcerans (strain Agy99) GN=rpsI PE=3 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 4.162e-17
Identity = 48/104 (46.15%), Postives = 62/104 (59.62%), Query Frame = -2
Query:  342 KIHVNDKEFDVYFPMLDHRAALLRPFSETKTLGLWDVDCTVKGGGVSGQVGAVRLGISRALQNWEPDLRPALRSAGFLTRDSRVVERKKPGKAKARKSFQWVKR 653
            K  +N +  + YFP   H+  +  P      L  +D+   + GGG SGQ GA+RLGI+RAL    P+ RPAL+ A FLTRD R  ERKK G  KARK+ Q+ KR
Sbjct:   49 KFDLNGRSLEAYFPNKVHQQLIKAPLVTVDRLESYDIFALLHGGGPSGQAGALRLGIARALIVANPEDRPALKKACFLTRDPRATERKKYGLKKARKAPQYSKR 152          
BLAST of CX296468 vs. ExPASy Swiss-Prot
Match: RS9_MYCTU (30S ribosomal protein S9 OS=Mycobacterium tuberculosis GN=rpsI PE=3 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 4.162e-17
Identity = 48/104 (46.15%), Postives = 63/104 (60.58%), Query Frame = -2
Query:  342 KIHVNDKEFDVYFPMLDHRAALLRPFSETKTLGLWDVDCTVKGGGVSGQVGAVRLGISRALQNWEPDLRPALRSAGFLTRDSRVVERKKPGKAKARKSFQWVKR 653
            K  +N +  + YFP   H+  +  P      +  +D+   + GGG SGQ GA+RLGI+RAL    P+ RPAL+ AGFLTRD R  ERKK G  KARK+ Q+ KR
Sbjct:   48 KFDLNGRSLEDYFPNKVHQQLIKAPLVTVDRVESFDIFAHLGGGGPSGQAGALRLGIARALILVSPEDRPALKKAGFLTRDPRATERKKYGLKKARKAPQYSKR 151          
BLAST of CX296468 vs. ExPASy Swiss-Prot
Match: RS9_MYCTA (30S ribosomal protein S9 OS=Mycobacterium tuberculosis (strain ATCC 25177 / H37Ra) GN=rpsI PE=3 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 4.162e-17
Identity = 48/104 (46.15%), Postives = 63/104 (60.58%), Query Frame = -2
Query:  342 KIHVNDKEFDVYFPMLDHRAALLRPFSETKTLGLWDVDCTVKGGGVSGQVGAVRLGISRALQNWEPDLRPALRSAGFLTRDSRVVERKKPGKAKARKSFQWVKR 653
            K  +N +  + YFP   H+  +  P      +  +D+   + GGG SGQ GA+RLGI+RAL    P+ RPAL+ AGFLTRD R  ERKK G  KARK+ Q+ KR
Sbjct:   48 KFDLNGRSLEDYFPNKVHQQLIKAPLVTVDRVESFDIFAHLGGGGPSGQAGALRLGIARALILVSPEDRPALKKAGFLTRDPRATERKKYGLKKARKAPQYSKR 151          
BLAST of CX296468 vs. ExPASy Swiss-Prot
Match: RS9_MYCBT (30S ribosomal protein S9 OS=Mycobacterium bovis (strain BCG / Tokyo 172 / ATCC 35737 / TMC 1019) GN=rpsI PE=3 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 4.162e-17
Identity = 48/104 (46.15%), Postives = 63/104 (60.58%), Query Frame = -2
Query:  342 KIHVNDKEFDVYFPMLDHRAALLRPFSETKTLGLWDVDCTVKGGGVSGQVGAVRLGISRALQNWEPDLRPALRSAGFLTRDSRVVERKKPGKAKARKSFQWVKR 653
            K  +N +  + YFP   H+  +  P      +  +D+   + GGG SGQ GA+RLGI+RAL    P+ RPAL+ AGFLTRD R  ERKK G  KARK+ Q+ KR
Sbjct:   48 KFDLNGRSLEDYFPNKVHQQLIKAPLVTVDRVESFDIFAHLGGGGPSGQAGALRLGIARALILVSPEDRPALKKAGFLTRDPRATERKKYGLKKARKAPQYSKR 151          
BLAST of CX296468 vs. ExPASy Swiss-Prot
Match: RS9_MYCBP (30S ribosomal protein S9 OS=Mycobacterium bovis (strain BCG / Pasteur 1173P2) GN=rpsI PE=3 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 4.162e-17
Identity = 48/104 (46.15%), Postives = 63/104 (60.58%), Query Frame = -2
Query:  342 KIHVNDKEFDVYFPMLDHRAALLRPFSETKTLGLWDVDCTVKGGGVSGQVGAVRLGISRALQNWEPDLRPALRSAGFLTRDSRVVERKKPGKAKARKSFQWVKR 653
            K  +N +  + YFP   H+  +  P      +  +D+   + GGG SGQ GA+RLGI+RAL    P+ RPAL+ AGFLTRD R  ERKK G  KARK+ Q+ KR
Sbjct:   48 KFDLNGRSLEDYFPNKVHQQLIKAPLVTVDRVESFDIFAHLGGGGPSGQAGALRLGIARALILVSPEDRPALKKAGFLTRDPRATERKKYGLKKARKAPQYSKR 151          
The following BLAST results are available for this feature:
BLAST of CX296468 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RS9_STRM54.162e-1745.6330S ribosomal protein S9 OS=Stenotrophomonas malto... [more]
RS9_STAHJ4.162e-1747.5730S ribosomal protein S9 OS=Staphylococcus haemoly... [more]
RS9_SHEHH4.162e-1747.5730S ribosomal protein S9 OS=Shewanella halifaxensi... [more]
RS9_RUBXD4.162e-1745.1930S ribosomal protein S9 OS=Rubrobacter xylanophil... [more]
RS9_RHOE44.162e-1747.5230S ribosomal protein S9 OS=Rhodococcus erythropol... [more]
RS9_MYCUA4.162e-1746.1530S ribosomal protein S9 OS=Mycobacterium ulcerans... [more]
RS9_MYCTU4.162e-1746.1530S ribosomal protein S9 OS=Mycobacterium tubercul... [more]
RS9_MYCTA4.162e-1746.1530S ribosomal protein S9 OS=Mycobacterium tubercul... [more]
RS9_MYCBT4.162e-1746.1530S ribosomal protein S9 OS=Mycobacterium bovis (s... [more]
RS9_MYCBP4.162e-1746.1530S ribosomal protein S9 OS=Mycobacterium bovis (s... [more]

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Properties
Property NameValue
Genbank descriptionC05141D11SK FerrChloL1 Citrus clementina cDNA clone C05141D11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX296468 ID=CX296468; Name=CX296468; organism=Citrus clementina; type=EST; length=666bp
CAATCCTAATACTGTACGATCGTCCTTAAAGCGAAGACATTACAGTACTC
AACAGTCAACACCGAAATTCAGGGCTCAACAAATGCTCCTCTCTTGTATT
TGCACATAAAGATGACATAAGGGTACAAACTAGAAACAGTTTTGTTTAAC
AAATAAACTGCTCAAAAATCTTCACAGCTTTTCCATGACCGTGTGCGTAC
AGAAAGCAAGAAGCAGGGCGTGTTGAATGGACGTGCCCAGCCGGTTGGAT
ACTCTCAAGACTCGACAAGTTATTGCAATGAGGCAAAACTGAACTTCCAT
AGAACGTGGGCCATTGAAATGGAAGCCCCAATTGTCGATTAACGCTTAAC
CCATTGGAAGCTCTTTCTCGCTTTTGCCTTCCCTGGTTTTTTCCTTTCAA
CCACACGTGAATCTCTCGTCAAGAACCCAGCGGATCTGAGTGCAGGACGT
AGATCTGGTTCCCAATTTTGCAATGCCCTGCTGATCCCTAGCCTAACAGC
TCCAACTTGACCTGAAACGCCACCCCCTTTGACAGTACAATCGACATCCC
AAAGGCCCAAGGTCTTTGTCTCAGAGAAAGGTCGAAGAAGTGCAGCACGA
TGATCAAGCATTGGGAAATAGACGTCAAATTCTTTATCATTAACATGAAT
TTTCCATCACCAGGTT
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