CX296468

Overview
NameCX296468
Unique NameCX296468
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length666
Libraries
Library NameType
FerrChloL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX296468 vs. ExPASy Swiss-Prot
Match: RS9_NOCFA (30S ribosomal protein S9 OS=Nocardia farcinica GN=rpsI PE=3 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 2.697e-16
Identity = 46/101 (45.54%), Postives = 61/101 (60.40%), Query Frame = -2
Query:  342 VNDKEFDVYFPMLDHRAALLRPFSETKTLGLWDVDCTVKGGGVSGQVGAVRLGISRALQNWEPDLRPALRSAGFLTRDSRVVERKKPGKAKARKSFQWVKR 644
            +N +  + YFP   H+  +  P    +    +D+   + GGG SGQ GA+RL I+RAL    P+ RPAL+ AGFLTRD R  ERKK G  KARK+ Q+ KR
Sbjct:   67 LNGRSIEDYFPNKVHQQLVKSPLVTVERTESFDIHARLVGGGPSGQAGALRLAIARALIEVTPEDRPALKRAGFLTRDPRATERKKYGLKKARKAPQYSKR 167          
BLAST of CX296468 vs. ExPASy Swiss-Prot
Match: RS9_MYCS2 (30S ribosomal protein S9 OS=Mycobacterium smegmatis GN=rpsI PE=1 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 2.697e-16
Identity = 45/104 (43.27%), Postives = 65/104 (62.50%), Query Frame = -2
Query:  342 KIHVNDKEFDVYFPMLDHRAALLRPFSETKTLGLWDVDCTVKGGGVSGQVGAVRLGISRALQNWEPDLRPALRSAGFLTRDSRVVERKKPGKAKARKSFQWVKR 653
            + +++ +  + YFP   H+  +  P      +  +D+   + GGG SGQ GA+RL I+RAL   +P+ RPAL+ AGFLTRD R +ERKK G  KARK+ Q+ KR
Sbjct:   47 QFNLDGRTLENYFPNKVHQQLIKAPLVTVDRVDQFDIYAHLDGGGPSGQAGALRLAIARALILVQPEDRPALKKAGFLTRDPRAIERKKYGLKKARKAPQYSKR 150          
BLAST of CX296468 vs. ExPASy Swiss-Prot
Match: RS9_MACCJ (30S ribosomal protein S9 OS=Macrococcus caseolyticus (strain JCSC5402) GN=rpsI PE=3 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 2.697e-16
Identity = 48/103 (46.60%), Postives = 64/103 (62.14%), Query Frame = -2
Query:  342 IHVNDKEFDVYFPMLDHRAALLRPFSETKTLGLWDVDCTVKGGGVSGQVGAVRLGISRALQNWEPDLRPALRSAGFLTRDSRVVERKKPGKAKARKSFQWVKR 650
            I +N ++   Y P       L +PF  T+T G +DV   V GGG++GQ  A+R GISRAL   +P+ R +L+ AG LTRD R+ ERKKPG   AR+S Q+ KR
Sbjct:   28 ITINGRDVRDYLPFESLILDLNQPFDITETKGNYDVLVNVNGGGLTGQAQAIRHGISRALLEADPEYRGSLKRAGMLTRDPRMKERKKPGLKGARRSPQFSKR 130          
BLAST of CX296468 vs. ExPASy Swiss-Prot
Match: RS9_BACP2 (30S ribosomal protein S9 OS=Bacillus pumilus (strain SAFR-032) GN=rpsI PE=3 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 2.697e-16
Identity = 48/104 (46.15%), Postives = 65/104 (62.50%), Query Frame = -2
Query:  342 KIHVNDKEFDVYFPMLDHRAALLRPFSETKTLGLWDVDCTVKGGGVSGQVGAVRLGISRALQNWEPDLRPALRSAGFLTRDSRVVERKKPGKAKARKSFQWVKR 653
            +I VN++E   Y P       + +P + T+T   +DV  TV GGG SGQ GA+R GISRAL   +P+ R +L+ AG LTRD R+ ERKK G   AR++ Q+ KR
Sbjct:   27 RIVVNNREITEYIPFAALIEDVKQPLNITETANSYDVLVTVHGGGFSGQAGAIRHGISRALLEVDPEYRTSLKRAGLLTRDPRMKERKKYGLKGARRAPQFSKR 130          
BLAST of CX296468 vs. ExPASy Swiss-Prot
Match: RT09_ASHGO (40S ribosomal protein S9, mitochondrial OS=Ashbya gossypii GN=MRPS9 PE=3 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 3.523e-16
Identity = 45/104 (43.27%), Postives = 62/104 (59.62%), Query Frame = -2
Query:  342 KIHVNDKEFDVYFPMLDHRAALLRPFSETKTLGLWDVDCTVKGGGVSGQVGAVRLGISRALQNWEPDLRPALRSAGFLTRDSRVVERKKPGKAKARKSFQWVKR 653
            ++ VN + F  YF  +  R A++ P       G +++   V+GGGV+GQ  A+   +++AL  + P L+  L  AG LTRD R VERKKPGK KARK   WVKR
Sbjct:  176 EVLVNGRTFADYFSKIKDRDAIMYPLRVLDAAGKYNIFAAVRGGGVTGQAEAIMHAVAKALVVFNPLLKTRLHRAGVLTRDYRHVERKKPGKRKARKMPAWVKR 279          
BLAST of CX296468 vs. ExPASy Swiss-Prot
Match: RS9_STAS1 (30S ribosomal protein S9 OS=Staphylococcus saprophyticus subsp. saprophyticus (strain ATCC 15305 / DSM 20229) GN=rpsI PE=3 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 3.523e-16
Identity = 48/103 (46.60%), Postives = 64/103 (62.14%), Query Frame = -2
Query:  342 IHVNDKEFDVYFPMLDHRAALLRPFSETKTLGLWDVDCTVKGGGVSGQVGAVRLGISRALQNWEPDLRPALRSAGFLTRDSRVVERKKPGKAKARKSFQWVKR 650
            I VN ++   Y P       + + F  T+T G +DV   V+GGG +GQ  A+R GISRAL   +P+ R +L+ AG LTRD R+ ERKKPG  KAR+S Q+ KR
Sbjct:   28 ITVNGRDVRSYLPFESLILDINQAFDVTETKGNYDVLVNVQGGGFTGQAQAIRHGISRALLEADPEYRGSLKRAGLLTRDPRMKERKKPGLKKARRSPQFSKR 130          
BLAST of CX296468 vs. ExPASy Swiss-Prot
Match: RS9_POLSJ (30S ribosomal protein S9 OS=Polaromonas sp. (strain JS666 / ATCC BAA-500) GN=rpsI PE=3 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 3.523e-16
Identity = 47/104 (45.19%), Postives = 64/104 (61.54%), Query Frame = -2
Query:  342 KIHVNDKEFDVYFPMLDHRAALLRPFSETKTLGLWDVDCTVKGGGVSGQVGAVRLGISRALQNWEPDLRPALRSAGFLTRDSRVVERKKPGKAKARKSFQWVKR 653
            KI +ND++  V+F          +P   T  +  +D+   V GGG SGQ GAVR GI+RAL +++  L+PAL  AGF+TRD+R VERKK G   AR+  Q+ KR
Sbjct:   27 KITINDRDIQVFFGRETSIMICRQPLFLTNHVETFDIMVNVHGGGESGQAGAVRHGITRALIDYDATLKPALSQAGFVTRDAREVERKKVGFRSARRRKQFSKR 130          
BLAST of CX296468 vs. ExPASy Swiss-Prot
Match: RS9_NITMU (30S ribosomal protein S9 OS=Nitrosospira multiformis (strain ATCC 25196 / NCIMB 11849) GN=rpsI PE=3 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 3.523e-16
Identity = 47/103 (45.63%), Postives = 64/103 (62.14%), Query Frame = -2
Query:  342 IHVNDKEFDVYFPMLDHRAALLRPFSETKTLGLWDVDCTVKGGGVSGQVGAVRLGISRALQNWEPDLRPALRSAGFLTRDSRVVERKKPGKAKARKSFQWVKR 650
            I VN+K  D +F     R  + +P   T  L  +D+   + GGG SGQ GAVR GI+RAL +++  L+P L +AG +TRD+R VERKK G  KAR+  Q+ KR
Sbjct:   28 ITVNNKPVDEFFSRETGRMVVRQPLELTGNLDRFDILVNIHGGGESGQAGAVRHGITRALIDFDATLKPVLSNAGLVTRDAREVERKKVGLRKARRRKQFSKR 130          
BLAST of CX296468 vs. ExPASy Swiss-Prot
Match: RS9_MYCS5 (30S ribosomal protein S9 OS=Mycoplasma synoviae (strain 53) GN=rpsI PE=3 SV=2)

HSP 1 Score: 85.1149 bits (209), Expect = 3.523e-16
Identity = 45/104 (43.27%), Postives = 64/104 (61.54%), Query Frame = -2
Query:  342 KIHVNDKEFDVYFPMLDHRAALLRPFSETKTLGLWDVDCTVKGGGVSGQVGAVRLGISRALQNWEPDLRPALRSAGFLTRDSRVVERKKPGKAKARKSFQWVKR 653
            + H+N +    Y     +     +PF  T+T   +D    VKGGG++GQ GA+RLGI+RAL +  PD R  L++ G LTRD+R+ ERKKPG   AR++ Q+ KR
Sbjct:   28 EFHINKRPAREYLTSDLYLKDANQPFVLTETFQKFDTFVNVKGGGLNGQAGAIRLGIARALLHASPDYRTKLKAEGMLTRDARIKERKKPGLRAARRARQFSKR 131          
BLAST of CX296468 vs. ExPASy Swiss-Prot
Match: RS9_METCA (30S ribosomal protein S9 OS=Methylococcus capsulatus GN=rpsI PE=3 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 3.523e-16
Identity = 45/104 (43.27%), Postives = 63/104 (60.58%), Query Frame = -2
Query:  342 KIHVNDKEFDVYFPMLDHRAALLRPFSETKTLGLWDVDCTVKGGGVSGQVGAVRLGISRALQNWEPDLRPALRSAGFLTRDSRVVERKKPGKAKARKSFQWVKR 653
            +I +NDK  + YF     R  +++     +     DV+  V GGG SGQ GA+R G++RAL   +  +RP LR AG++TRD+R VERKK G  KAR+  Q+ KR
Sbjct:   27 QIRINDKSLEEYFGRKTDRMIVMQALEAVEMTDKLDVNVKVIGGGPSGQAGAIRHGLARALIELDEAMRPVLRKAGYVTRDAREVERKKVGLHKARRRPQYSKR 130          
The following BLAST results are available for this feature:
BLAST of CX296468 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RS9_NOCFA2.697e-1645.5430S ribosomal protein S9 OS=Nocardia farcinica GN=... [more]
RS9_MYCS22.697e-1643.2730S ribosomal protein S9 OS=Mycobacterium smegmati... [more]
RS9_MACCJ2.697e-1646.6030S ribosomal protein S9 OS=Macrococcus caseolytic... [more]
RS9_BACP22.697e-1646.1530S ribosomal protein S9 OS=Bacillus pumilus (stra... [more]
RT09_ASHGO3.523e-1643.2740S ribosomal protein S9, mitochondrial OS=Ashbya ... [more]
RS9_STAS13.523e-1646.6030S ribosomal protein S9 OS=Staphylococcus saproph... [more]
RS9_POLSJ3.523e-1645.1930S ribosomal protein S9 OS=Polaromonas sp. (strai... [more]
RS9_NITMU3.523e-1645.6330S ribosomal protein S9 OS=Nitrosospira multiform... [more]
RS9_MYCS53.523e-1643.2730S ribosomal protein S9 OS=Mycoplasma synoviae (s... [more]
RS9_METCA3.523e-1643.2730S ribosomal protein S9 OS=Methylococcus capsulat... [more]

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Properties
Property NameValue
Genbank descriptionC05141D11SK FerrChloL1 Citrus clementina cDNA clone C05141D11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX296468 ID=CX296468; Name=CX296468; organism=Citrus clementina; type=EST; length=666bp
CAATCCTAATACTGTACGATCGTCCTTAAAGCGAAGACATTACAGTACTC
AACAGTCAACACCGAAATTCAGGGCTCAACAAATGCTCCTCTCTTGTATT
TGCACATAAAGATGACATAAGGGTACAAACTAGAAACAGTTTTGTTTAAC
AAATAAACTGCTCAAAAATCTTCACAGCTTTTCCATGACCGTGTGCGTAC
AGAAAGCAAGAAGCAGGGCGTGTTGAATGGACGTGCCCAGCCGGTTGGAT
ACTCTCAAGACTCGACAAGTTATTGCAATGAGGCAAAACTGAACTTCCAT
AGAACGTGGGCCATTGAAATGGAAGCCCCAATTGTCGATTAACGCTTAAC
CCATTGGAAGCTCTTTCTCGCTTTTGCCTTCCCTGGTTTTTTCCTTTCAA
CCACACGTGAATCTCTCGTCAAGAACCCAGCGGATCTGAGTGCAGGACGT
AGATCTGGTTCCCAATTTTGCAATGCCCTGCTGATCCCTAGCCTAACAGC
TCCAACTTGACCTGAAACGCCACCCCCTTTGACAGTACAATCGACATCCC
AAAGGCCCAAGGTCTTTGTCTCAGAGAAAGGTCGAAGAAGTGCAGCACGA
TGATCAAGCATTGGGAAATAGACGTCAAATTCTTTATCATTAACATGAAT
TTTCCATCACCAGGTT
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