CX296468
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CX296468 vs. ExPASy Swiss-Prot
Match: RS9_NOCFA (30S ribosomal protein S9 OS=Nocardia farcinica GN=rpsI PE=3 SV=1) HSP 1 Score: 85.5001 bits (210), Expect = 2.697e-16 Identity = 46/101 (45.54%), Postives = 61/101 (60.40%), Query Frame = -2 Query: 342 VNDKEFDVYFPMLDHRAALLRPFSETKTLGLWDVDCTVKGGGVSGQVGAVRLGISRALQNWEPDLRPALRSAGFLTRDSRVVERKKPGKAKARKSFQWVKR 644 +N + + YFP H+ + P + +D+ + GGG SGQ GA+RL I+RAL P+ RPAL+ AGFLTRD R ERKK G KARK+ Q+ KR Sbjct: 67 LNGRSIEDYFPNKVHQQLVKSPLVTVERTESFDIHARLVGGGPSGQAGALRLAIARALIEVTPEDRPALKRAGFLTRDPRATERKKYGLKKARKAPQYSKR 167
BLAST of CX296468 vs. ExPASy Swiss-Prot
Match: RS9_MYCS2 (30S ribosomal protein S9 OS=Mycobacterium smegmatis GN=rpsI PE=1 SV=1) HSP 1 Score: 85.5001 bits (210), Expect = 2.697e-16 Identity = 45/104 (43.27%), Postives = 65/104 (62.50%), Query Frame = -2 Query: 342 KIHVNDKEFDVYFPMLDHRAALLRPFSETKTLGLWDVDCTVKGGGVSGQVGAVRLGISRALQNWEPDLRPALRSAGFLTRDSRVVERKKPGKAKARKSFQWVKR 653 + +++ + + YFP H+ + P + +D+ + GGG SGQ GA+RL I+RAL +P+ RPAL+ AGFLTRD R +ERKK G KARK+ Q+ KR Sbjct: 47 QFNLDGRTLENYFPNKVHQQLIKAPLVTVDRVDQFDIYAHLDGGGPSGQAGALRLAIARALILVQPEDRPALKKAGFLTRDPRAIERKKYGLKKARKAPQYSKR 150
BLAST of CX296468 vs. ExPASy Swiss-Prot
Match: RS9_MACCJ (30S ribosomal protein S9 OS=Macrococcus caseolyticus (strain JCSC5402) GN=rpsI PE=3 SV=1) HSP 1 Score: 85.5001 bits (210), Expect = 2.697e-16 Identity = 48/103 (46.60%), Postives = 64/103 (62.14%), Query Frame = -2 Query: 342 IHVNDKEFDVYFPMLDHRAALLRPFSETKTLGLWDVDCTVKGGGVSGQVGAVRLGISRALQNWEPDLRPALRSAGFLTRDSRVVERKKPGKAKARKSFQWVKR 650 I +N ++ Y P L +PF T+T G +DV V GGG++GQ A+R GISRAL +P+ R +L+ AG LTRD R+ ERKKPG AR+S Q+ KR Sbjct: 28 ITINGRDVRDYLPFESLILDLNQPFDITETKGNYDVLVNVNGGGLTGQAQAIRHGISRALLEADPEYRGSLKRAGMLTRDPRMKERKKPGLKGARRSPQFSKR 130
BLAST of CX296468 vs. ExPASy Swiss-Prot
Match: RS9_BACP2 (30S ribosomal protein S9 OS=Bacillus pumilus (strain SAFR-032) GN=rpsI PE=3 SV=1) HSP 1 Score: 85.5001 bits (210), Expect = 2.697e-16 Identity = 48/104 (46.15%), Postives = 65/104 (62.50%), Query Frame = -2 Query: 342 KIHVNDKEFDVYFPMLDHRAALLRPFSETKTLGLWDVDCTVKGGGVSGQVGAVRLGISRALQNWEPDLRPALRSAGFLTRDSRVVERKKPGKAKARKSFQWVKR 653 +I VN++E Y P + +P + T+T +DV TV GGG SGQ GA+R GISRAL +P+ R +L+ AG LTRD R+ ERKK G AR++ Q+ KR Sbjct: 27 RIVVNNREITEYIPFAALIEDVKQPLNITETANSYDVLVTVHGGGFSGQAGAIRHGISRALLEVDPEYRTSLKRAGLLTRDPRMKERKKYGLKGARRAPQFSKR 130
BLAST of CX296468 vs. ExPASy Swiss-Prot
Match: RT09_ASHGO (40S ribosomal protein S9, mitochondrial OS=Ashbya gossypii GN=MRPS9 PE=3 SV=1) HSP 1 Score: 85.1149 bits (209), Expect = 3.523e-16 Identity = 45/104 (43.27%), Postives = 62/104 (59.62%), Query Frame = -2 Query: 342 KIHVNDKEFDVYFPMLDHRAALLRPFSETKTLGLWDVDCTVKGGGVSGQVGAVRLGISRALQNWEPDLRPALRSAGFLTRDSRVVERKKPGKAKARKSFQWVKR 653 ++ VN + F YF + R A++ P G +++ V+GGGV+GQ A+ +++AL + P L+ L AG LTRD R VERKKPGK KARK WVKR Sbjct: 176 EVLVNGRTFADYFSKIKDRDAIMYPLRVLDAAGKYNIFAAVRGGGVTGQAEAIMHAVAKALVVFNPLLKTRLHRAGVLTRDYRHVERKKPGKRKARKMPAWVKR 279
BLAST of CX296468 vs. ExPASy Swiss-Prot
Match: RS9_STAS1 (30S ribosomal protein S9 OS=Staphylococcus saprophyticus subsp. saprophyticus (strain ATCC 15305 / DSM 20229) GN=rpsI PE=3 SV=1) HSP 1 Score: 85.1149 bits (209), Expect = 3.523e-16 Identity = 48/103 (46.60%), Postives = 64/103 (62.14%), Query Frame = -2 Query: 342 IHVNDKEFDVYFPMLDHRAALLRPFSETKTLGLWDVDCTVKGGGVSGQVGAVRLGISRALQNWEPDLRPALRSAGFLTRDSRVVERKKPGKAKARKSFQWVKR 650 I VN ++ Y P + + F T+T G +DV V+GGG +GQ A+R GISRAL +P+ R +L+ AG LTRD R+ ERKKPG KAR+S Q+ KR Sbjct: 28 ITVNGRDVRSYLPFESLILDINQAFDVTETKGNYDVLVNVQGGGFTGQAQAIRHGISRALLEADPEYRGSLKRAGLLTRDPRMKERKKPGLKKARRSPQFSKR 130
BLAST of CX296468 vs. ExPASy Swiss-Prot
Match: RS9_POLSJ (30S ribosomal protein S9 OS=Polaromonas sp. (strain JS666 / ATCC BAA-500) GN=rpsI PE=3 SV=1) HSP 1 Score: 85.1149 bits (209), Expect = 3.523e-16 Identity = 47/104 (45.19%), Postives = 64/104 (61.54%), Query Frame = -2 Query: 342 KIHVNDKEFDVYFPMLDHRAALLRPFSETKTLGLWDVDCTVKGGGVSGQVGAVRLGISRALQNWEPDLRPALRSAGFLTRDSRVVERKKPGKAKARKSFQWVKR 653 KI +ND++ V+F +P T + +D+ V GGG SGQ GAVR GI+RAL +++ L+PAL AGF+TRD+R VERKK G AR+ Q+ KR Sbjct: 27 KITINDRDIQVFFGRETSIMICRQPLFLTNHVETFDIMVNVHGGGESGQAGAVRHGITRALIDYDATLKPALSQAGFVTRDAREVERKKVGFRSARRRKQFSKR 130
BLAST of CX296468 vs. ExPASy Swiss-Prot
Match: RS9_NITMU (30S ribosomal protein S9 OS=Nitrosospira multiformis (strain ATCC 25196 / NCIMB 11849) GN=rpsI PE=3 SV=1) HSP 1 Score: 85.1149 bits (209), Expect = 3.523e-16 Identity = 47/103 (45.63%), Postives = 64/103 (62.14%), Query Frame = -2 Query: 342 IHVNDKEFDVYFPMLDHRAALLRPFSETKTLGLWDVDCTVKGGGVSGQVGAVRLGISRALQNWEPDLRPALRSAGFLTRDSRVVERKKPGKAKARKSFQWVKR 650 I VN+K D +F R + +P T L +D+ + GGG SGQ GAVR GI+RAL +++ L+P L +AG +TRD+R VERKK G KAR+ Q+ KR Sbjct: 28 ITVNNKPVDEFFSRETGRMVVRQPLELTGNLDRFDILVNIHGGGESGQAGAVRHGITRALIDFDATLKPVLSNAGLVTRDAREVERKKVGLRKARRRKQFSKR 130
BLAST of CX296468 vs. ExPASy Swiss-Prot
Match: RS9_MYCS5 (30S ribosomal protein S9 OS=Mycoplasma synoviae (strain 53) GN=rpsI PE=3 SV=2) HSP 1 Score: 85.1149 bits (209), Expect = 3.523e-16 Identity = 45/104 (43.27%), Postives = 64/104 (61.54%), Query Frame = -2 Query: 342 KIHVNDKEFDVYFPMLDHRAALLRPFSETKTLGLWDVDCTVKGGGVSGQVGAVRLGISRALQNWEPDLRPALRSAGFLTRDSRVVERKKPGKAKARKSFQWVKR 653 + H+N + Y + +PF T+T +D VKGGG++GQ GA+RLGI+RAL + PD R L++ G LTRD+R+ ERKKPG AR++ Q+ KR Sbjct: 28 EFHINKRPAREYLTSDLYLKDANQPFVLTETFQKFDTFVNVKGGGLNGQAGAIRLGIARALLHASPDYRTKLKAEGMLTRDARIKERKKPGLRAARRARQFSKR 131
BLAST of CX296468 vs. ExPASy Swiss-Prot
Match: RS9_METCA (30S ribosomal protein S9 OS=Methylococcus capsulatus GN=rpsI PE=3 SV=1) HSP 1 Score: 85.1149 bits (209), Expect = 3.523e-16 Identity = 45/104 (43.27%), Postives = 63/104 (60.58%), Query Frame = -2 Query: 342 KIHVNDKEFDVYFPMLDHRAALLRPFSETKTLGLWDVDCTVKGGGVSGQVGAVRLGISRALQNWEPDLRPALRSAGFLTRDSRVVERKKPGKAKARKSFQWVKR 653 +I +NDK + YF R +++ + DV+ V GGG SGQ GA+R G++RAL + +RP LR AG++TRD+R VERKK G KAR+ Q+ KR Sbjct: 27 QIRINDKSLEEYFGRKTDRMIVMQALEAVEMTDKLDVNVKVIGGGPSGQAGAIRHGLARALIELDEAMRPVLRKAGYVTRDAREVERKKVGLHKARRRPQYSKR 130 The following BLAST results are available for this feature:
BLAST of CX296468 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 500
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Sequences
The
following sequences are available for this feature:
EST sequence >CX296468 ID=CX296468; Name=CX296468; organism=Citrus clementina; type=EST; length=666bpback to top |