CX296472

Overview
NameCX296472
Unique NameCX296472
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length660
Libraries
Library NameType
FerrChloL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig588 contig Ccv1_Contig588:61..720. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX296472 vs. ExPASy Swiss-Prot
Match: RCA_ORYSJ (Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic OS=Oryza sativa subsp. japonica GN=RCA PE=1 SV=2)

HSP 1 Score: 261.922 bits (668), Expect = 2.083e-69
Identity = 136/182 (74.73%), Postives = 150/182 (82.42%), Query Frame = 1
Query:  127 GAATSVPSSSFFGTSLKKVSSRIPPSKVPSAS---FKITA-EVDENKQTKQDRWKGLAYDESDDQQDITRGKGAVDSLFQAPMGTGTHYAVMSSYDYISQGLRTYNLDNTIDGLYIAPAFMDKLVVHITKNFMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNA 660
            GA  S P++ F G  LKK  +        S++   FK+ A E+DE KQT QDRWKGLAYD SDDQQDITRGKG VDSLFQAP G GTH AV+SSY+Y+SQGLRTY+ DNT+ G YIAPAFMDKLVVHI+KNFM+LPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNA
Sbjct:   10 GAPASTPTN-FLGKKLKKQVTSAVNYHGKSSNINRFKVMAKELDEGKQTDQDRWKGLAYDISDDQQDITRGKGFVDSLFQAPTGDGTHEAVLSSYEYLSQGLRTYDFDNTMGGFYIAPAFMDKLVVHISKNFMTLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNA 190          
BLAST of CX296472 vs. ExPASy Swiss-Prot
Match: RCA_MAIZE (Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic OS=Zea mays GN=RCA1 PE=2 SV=3)

HSP 1 Score: 257.684 bits (657), Expect = 3.929e-68
Identity = 135/186 (72.58%), Postives = 149/186 (80.11%), Query Frame = 1
Query:  127 GAATSVPS-SSFFGTSLKK--VSSRIP---PSKVPSASFKITA--EVDENKQTKQDRWKGLAYDESDDQQDITRGKGAVDSLFQAPMGTGTHYAVMSSYDYISQGLRTYNLDNTIDGLYIAPAFMDKLVVHITKNFMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNA 660
            GA  S P+ SSF G  L K  VS+ +     S   ++ FK  A  EVDE KQT +DRWKGLAYD SDDQQDITRGKG VD+LFQAPMG GTH AV+SSYDYISQG ++YN DN +DG YIA  FMDKLVVH++KNFM+LPNIKVPLILGIWGGKGQGKSFQCELVFAKMGI PIMMSAGELESGNA
Sbjct:   10 GAPASTPTRSSFLGKKLNKPQVSAAVTYHGKSSSSNSRFKAMAAKEVDETKQTDEDRWKGLAYDISDDQQDITRGKGLVDNLFQAPMGDGTHVAVLSSYDYISQGQKSYNFDNMMDGFYIAKGFMDKLVVHLSKNFMTLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGITPIMMSAGELESGNA 195          
BLAST of CX296472 vs. ExPASy Swiss-Prot
Match: RCAB_HORVU (Ribulose bisphosphate carboxylase/oxygenase activase B, chloroplastic OS=Hordeum vulgare GN=RCAB PE=2 SV=1)

HSP 1 Score: 255.373 bits (651), Expect = 1.950e-67
Identity = 130/180 (72.22%), Postives = 146/180 (81.11%), Query Frame = 1
Query:  127 GAATSVPSSSFFGTSLKKVSSRIPPSKVPSASFKITA---EVDENKQTKQDRWKGLAYDESDDQQDITRGKGAVDSLFQAPMGTGTHYAVMSSYDYISQGLRTYNLDNTIDGLYIAPAFMDKLVVHITKNFMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGN 657
            GA  S P+  F G  +K        +K+ S   ++ A   E+D+ KQT  DRWKGLAYD SDDQQDITRGKG VDSLFQAPMG GTH A++SSY+YISQGLR Y+ DNT+DGLYIAPAFMDKL+VH+ KNFM+LPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGN
Sbjct:   10 GAPASTPTI-FLGKKVKNYYHG--GNKMKSRVVRVMAAKKELDQGKQTDADRWKGLAYDISDDQQDITRGKGIVDSLFQAPMGDGTHEAILSSYEYISQGLRKYDFDNTMDGLYIAPAFMDKLIVHLAKNFMTLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGN 186          
BLAST of CX296472 vs. ExPASy Swiss-Prot
Match: RCAA_HORVU (Ribulose bisphosphate carboxylase/oxygenase activase A, chloroplastic OS=Hordeum vulgare GN=RCAA PE=2 SV=1)

HSP 1 Score: 248.054 bits (632), Expect = 3.113e-65
Identity = 128/181 (70.72%), Postives = 145/181 (80.11%), Query Frame = 1
Query:  127 GAATSVPSSSFFGTSLKK-VSSRIPPSKVPSASFKITAEVDENKQTKQ--DRWKGLAYDESDDQQDITRGKGAVDSLFQAPMGTGTHYAVMSSYDYISQGLRTYNLDNTIDGLYIAPAFMDKLVVHITKNFMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNA 660
            GA  S P++ F G  LKK V+S +      S + + T    EN   K+  D+WKGLAYD SDDQQDITRGKG VDSLFQAP G GTH AV+SSY+Y+SQGLR Y+ DNT+ G YIAPAFMDKLVVH++KNFM+LPNIK+PLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNA
Sbjct:   10 GAPASTPTN-FLGKKLKKQVTSAVNYHGKSSKANRFTVMAAENIDEKRNTDKWKGLAYDISDDQQDITRGKGIVDSLFQAPTGHGTHEAVLSSYEYVSQGLRKYDFDNTMGGFYIAPAFMDKLVVHLSKNFMTLPNIKIPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNA 189          
BLAST of CX296472 vs. ExPASy Swiss-Prot
Match: RCA_SPIOL (Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic OS=Spinacia oleracea PE=1 SV=2)

HSP 1 Score: 246.899 bits (629), Expect = 6.936e-65
Identity = 124/190 (65.26%), Postives = 146/190 (76.84%), Query Frame = 1
Query:   94 AAAVPLSFNGSGAATSVPSSSFFGTSLKKVSS-RIPPSKVPSASFKITAEVDENKQTKQDRWKGLAYDESDDQQDITRGKGAVDSLFQAPMGTGTHYAVMSSYDYISQGLRTYNLDNTIDGLYIAPAFMDKLVVHITKNFMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNA 660
            A   PL+ NGS A  SVP+S F G+SLKK ++ R P S   S +  +T +  EN++   D+W  LA D SDDQ DI RGKG VDSLFQAP   GTH  + SS++Y SQGLR Y++DN +   YIAPAFMDKLVVHITKNF++LPNIK+PLILG+WGGKGQGKSFQCELVFAK+GINPIMMSAGELESGNA
Sbjct:   11 ATRAPLNLNGSSAGASVPTSGFLGSSLKKHTNVRFPSS---SRTTSMTVKAAENEEKNTDKWAHLAKDFSDDQLDIRRGKGMVDSLFQAPADAGTHVPIQSSFEYESQGLRKYDIDNMLGDFYIAPAFMDKLVVHITKNFLNLPNIKIPLILGVWGGKGQGKSFQCELVFAKLGINPIMMSAGELESGNA 197          
BLAST of CX296472 vs. ExPASy Swiss-Prot
Match: RCA_CHLRE (Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic OS=Chlamydomonas reinhardtii PE=2 SV=1)

HSP 1 Score: 171.785 bits (434), Expect = 2.835e-42
Identity = 89/161 (55.28%), Postives = 111/161 (68.94%), Query Frame = 1
Query:  187 SRIPPSKVPSASFKITAEVDENKQTKQDRWKGL--AYDESDDQQDITRGKGAVDSLFQAPMGTG-THYAVMSSYDYISQGLRTYNLDNTIDGLYIAPAFMDKLVVHITKNFMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNA 660
            +R+    V  A  ++ A      + +  RW+ +    D SDDQQDITRG+  VD LFQ   G G TH AV+SS +Y+SQ   ++N  N  DG YI+PAF+DK+ +HI KNFM LP IKVPLILGIWGGKGQGK+FQC L + K+GI PI+MSAGELESGNA
Sbjct:   18 ARVATRSVRRAQLQVVAP----SRKQMGRWRSIDAGVDASDDQQDITRGREMVDDLFQGGFGAGGTHNAVLSSQEYLSQSRASFN--NIEDGFYISPAFLDKMTIHIAKNFMDLPKIKVPLILGIWGGKGQGKTFQCALAYKKLGIAPIVMSAGELESGNA 172          
BLAST of CX296472 vs. ExPASy Swiss-Prot
Match: RCA_ARAHY (Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic (Fragments) OS=Arachis hypogaea GN=RCA PE=1 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 5.940e-24
Identity = 70/127 (55.12%), Postives = 71/127 (55.91%), Query Frame = 1
Query:  280 GLAYDESDDQQDITRGKGAVDSLFQAPMGTGTHYAVMSSYDYISQGLRTYNLDNTIDGLYIAPAFMDKLVVHITKNFMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNA 660
            GLAYD SDDQQDITRG   VDSLFQAPM  GTHYAVMSSY+YISQGLR                                    VPLILGIWGG              KMGINPIMMSAGELESGNA
Sbjct:    1 GLAYDISDDQQDITRGM--VDSLFQAPMNDGTHYAVMSSYEYISQGLR------------------------------------VPLILGIWGG--------------KMGINPIMMSAGELESGNA 75          
BLAST of CX296472 vs. ExPASy Swiss-Prot
Match: RCA_ANASC (Ribulose bisphosphate carboxylase/oxygenase activase OS=Anabaena sp. (strain CA / ATCC 33047) GN=rca PE=3 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 2.336e-20
Identity = 45/68 (66.18%), Postives = 56/68 (82.35%), Query Frame = 1
Query:  457 YIAPAFMDKLVVHITKNFMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNA 660
            YIAP F+DKL VHITKNF++LP ++VPLILGI G KG+GK+FQCEL F KMG+   ++S GELES +A
Sbjct:    4 YIAPRFLDKLAVHITKNFLNLPGVRVPLILGIHGRKGEGKTFQCELAFEKMGVEVTLISGGELESPDA 71          
BLAST of CX296472 vs. ExPASy Swiss-Prot
Match: RCA_ANASP (Ribulose bisphosphate carboxylase/oxygenase activase OS=Anabaena sp. (strain PCC 7120) GN=rca PE=3 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 3.051e-20
Identity = 45/68 (66.18%), Postives = 56/68 (82.35%), Query Frame = 1
Query:  457 YIAPAFMDKLVVHITKNFMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNA 660
            YIAP F+DKL VHITKNF+++P ++VPLILGI G KG+GK+FQCEL F KMGI   ++S GELES +A
Sbjct:    4 YIAPRFLDKLAVHITKNFLNIPGVRVPLILGIHGRKGEGKTFQCELAFEKMGIEVTLISGGELESPDA 71          
The following BLAST results are available for this feature:
BLAST of CX296472 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 19
Match NameE-valueIdentityDescription
RCA_ORYSJ2.083e-6974.73Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCA_MAIZE3.929e-6872.58Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCAB_HORVU1.950e-6772.22Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCAA_HORVU3.113e-6570.72Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCA_SPIOL6.936e-6565.26Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCA_CHLRE2.835e-4255.28Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCA_ARAHY5.940e-2455.12Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCA_ANASC2.336e-2066.18Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCA_ANASP3.051e-2066.18Ribulose bisphosphate carboxylase/oxygenase activa... [more]

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Properties
Property NameValue
Genbank descriptionC05141E04SK FerrChloL1 Citrus clementina cDNA clone C05141E04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX296472 ID=CX296472; Name=CX296472; organism=Citrus clementina; type=EST; length=660bp
CACGAGGGCATTGCTTCGCTTTCCTTTGCCTGCATTACAGCGTGACCCTT
TAGCTACTTCAATCACAGCCGTCCAATTCTCGCTAGCCTAATGGCTGCTG
CTGTACCGTTGAGCTTCAATGGCTCTGGTGCTGCAACCTCTGTCCCAAGC
TCATCTTTCTTTGGCACCAGCTTGAAGAAGGTAAGCTCAAGGATCCCCCC
ATCCAAGGTCCCTTCTGCGAGCTTCAAGATTACTGCTGAAGTCGATGAGA
ACAAGCAGACCAAGCAGGACAGATGGAAGGGCCTTGCCTACGACGAATCT
GATGACCAACAAGACATCACCAGAGGAAAAGGTGCTGTGGACTCTCTGTT
CCAAGCCCCCATGGGAACCGGAACTCACTATGCTGTCATGAGTTCTTATG
ACTACATCAGCCAAGGTCTCCGCACATACAACTTGGACAACACGATCGAC
GGTCTCTACATTGCCCCTGCTTTCATGGACAAGCTTGTTGTTCACATCAC
CAAGAACTTCATGTCCCTGCCCAACATCAAGGTTCCTCTCATCTTGGGTA
TTTGGGGAGGCAAAGGACAAGGAAAATCATTCCAATGTGAGCTTGTTTTC
GCCAAGATGGGCATCAACCCAATTATGATGAGTGCCGGAGAATTGGAAAG
TGGCAATGCT
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