CX296478

Overview
NameCX296478
Unique NameCX296478
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length115
Libraries
Library NameType
FerrChloL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CX296478 vs. ExPASy Swiss-Prot
Match: UBIQ_CAMDR (Ubiquitin OS=Camelus dromedarius PE=3 SV=2)

HSP 1 Score: 70.0922 bits (170), Expect = 4.029e-12
Identity = 34/36 (94.44%), Postives = 35/36 (97.22%), Query Frame = 3 
Query:    6 ITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGK 113
            ITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGK
Sbjct:   13 ITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGK 48
[Close]
BLAST of CX296478 vs. ExPASy Swiss-Prot
Match: UBIQ_BOVIN (Ubiquitin OS=Bos taurus GN=RPS27A PE=1 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 4.029e-12
Identity = 34/36 (94.44%), Postives = 35/36 (97.22%), Query Frame = 3 
Query:    6 ITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGK 113
            ITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGK
Sbjct:   13 ITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGK 48
[Close]
BLAST of CX296478 vs. ExPASy Swiss-Prot
Match: UBIQ_ACACA (Ubiquitin OS=Acanthamoeba castellanii PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 4.029e-12
Identity = 34/36 (94.44%), Postives = 35/36 (97.22%), Query Frame = 3 
Query:    6 ITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGK 113
            ITLEVESSDTI+NVK KIQDKEGIPPDQQRLIFAGK
Sbjct:   13 ITLEVESSDTIENVKQKIQDKEGIPPDQQRLIFAGK 48
[Close]
BLAST of CX296478 vs. ExPASy Swiss-Prot
Match: UBIQ_TETPY (Ubiquitin OS=Tetrahymena pyriformis GN=TUF11 PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 5.262e-12
Identity = 33/36 (91.67%), Postives = 36/36 (100.00%), Query Frame = 3 
Query:    6 ITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGK 113
            ITL+VE+SDTI+NVKAKIQDKEGIPPDQQRLIFAGK
Sbjct:   13 ITLDVEASDTIENVKAKIQDKEGIPPDQQRLIFAGK 48
[Close]
BLAST of CX296478 vs. ExPASy Swiss-Prot
Match: UBIQ_EUPEU (Ubiquitin OS=Euplotes eurystomus PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 6.872e-12
Identity = 33/36 (91.67%), Postives = 34/36 (94.44%), Query Frame = 3 
Query:    6 ITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGK 113
            ITL+VE SDTIDNVK KIQDKEGIPPDQQRLIFAGK
Sbjct:   13 ITLDVEQSDTIDNVKTKIQDKEGIPPDQQRLIFAGK 48
[Close]
BLAST of CX296478 vs. ExPASy Swiss-Prot
Match: UBIQ_TRYBB (Ubiquitin OS=Trypanosoma brucei brucei PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 8.975e-12
Identity = 33/36 (91.67%), Postives = 35/36 (97.22%), Query Frame = 3 
Query:    6 ITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGK 113
            I LEVE+SDTI+NVKAKIQDKEGIPPDQQRLIFAGK
Sbjct:   13 IALEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGK 48
[Close]
BLAST of CX296478 vs. ExPASy Swiss-Prot
Match: UBIQ_EIMBO (Ubiquitin OS=Eimeria bovis PE=2 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 8.975e-12
Identity = 33/36 (91.67%), Postives = 35/36 (97.22%), Query Frame = 3 
Query:    6 ITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGK 113
            ITL+VE SDTI+NVKAKIQDKEGIPPDQQRLIFAGK
Sbjct:   13 ITLDVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGK 48
[Close]
BLAST of CX296478 vs. ExPASy Swiss-Prot
Match: UBIQ_STRPU (Ubiquitin OS=Strongylocentrotus purpuratus PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 1.172e-11
Identity = 33/36 (91.67%), Postives = 35/36 (97.22%), Query Frame = 3 
Query:    6 ITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGK 113
            ITLEVE SD+I+NVKAKIQDKEGIPPDQQRLIFAGK
Sbjct:   13 ITLEVEPSDSIENVKAKIQDKEGIPPDQQRLIFAGK 48
[Close]
BLAST of CX296478 vs. ExPASy Swiss-Prot
Match: UBIQ_ENCCU (Ubiquitin OS=Encephalitozoon cuniculi GN=ECU02_0740i PE=1 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 1.172e-11
Identity = 33/36 (91.67%), Postives = 35/36 (97.22%), Query Frame = 3 
Query:    6 ITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGK 113
            ITLEVE SD+I+NVKAKIQDKEGIPPDQQRLIFAGK
Sbjct:   13 ITLEVEPSDSIENVKAKIQDKEGIPPDQQRLIFAGK 48
[Close]
BLAST of CX296478 vs. ExPASy Swiss-Prot
Match: UBIQ_DICDI (Ubiquitin OS=Dictyostelium discoideum GN=ubqA PE=1 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 1.172e-11
Identity = 33/36 (91.67%), Postives = 34/36 (94.44%), Query Frame = 3 
Query:    6 ITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGK 113
            ITLEVE SD I+NVKAKIQDKEGIPPDQQRLIFAGK
Sbjct:   13 ITLEVEGSDNIENVKAKIQDKEGIPPDQQRLIFAGK 48
The following BLAST results are available for this feature:
BLAST of CX296478 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 73
Match NameE-valueIdentityDescription
UBIQ_CAMDR4.029e-1294.44Ubiquitin OS=Camelus dromedarius PE=3 SV=2[more]
UBIQ_BOVIN4.029e-1294.44Ubiquitin OS=Bos taurus GN=RPS27A PE=1 SV=1[more]
UBIQ_ACACA4.029e-1294.44Ubiquitin OS=Acanthamoeba castellanii PE=3 SV=1[more]
UBIQ_TETPY5.262e-1291.67Ubiquitin OS=Tetrahymena pyriformis GN=TUF11 PE=3 ... [more]
UBIQ_EUPEU6.872e-1291.67Ubiquitin OS=Euplotes eurystomus PE=3 SV=1[more]
UBIQ_TRYBB8.975e-1291.67Ubiquitin OS=Trypanosoma brucei brucei PE=3 SV=1[more]
UBIQ_EIMBO8.975e-1291.67Ubiquitin OS=Eimeria bovis PE=2 SV=1[more]
UBIQ_STRPU1.172e-1191.67Ubiquitin OS=Strongylocentrotus purpuratus PE=3 SV... [more]
UBIQ_ENCCU1.172e-1191.67Ubiquitin OS=Encephalitozoon cuniculi GN=ECU02_074... [more]
UBIQ_DICDI1.172e-1191.67Ubiquitin OS=Dictyostelium discoideum GN=ubqA PE=1... [more]

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Properties
Property NameValue
Genbank descriptionC05141E11SK FerrChloL1 Citrus clementina cDNA clone C05141E11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX296478 ID=CX296478; Name=CX296478; organism=Citrus clementina; type=EST; length=115bp
AGGCCATAACCCTTGAGGTCGAAAGCTCTGACACCATTGATAATGTAAAA
GCCAAGATCCAGGATAAGGAAGGGATCCCACCAGACCAGCAAAGGCTCAT
CTTTGCTGGCAAACA
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