CX296484

Overview
NameCX296484
Unique NameCX296484
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length577
Libraries
Library NameType
FerrChloL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX296484 vs. ExPASy Swiss-Prot
Match: EFTU_THEEB (Elongation factor Tu OS=Thermosynechococcus elongatus (strain BP-1) GN=tuf PE=3 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 2.946e-15
Identity = 36/58 (62.07%), Postives = 48/58 (82.76%), Query Frame = -1
Query:  401 VSSIMTDKDAESKMVMPGDRVKMVVELIMPVACEQGMRFSIREGGKTVGAGVIQSIIE 574
            ++S  +D  + ++MVMPGDR+KM VELI P+A EQGMRF+IREGG+T+GAGV+  IIE
Sbjct:  352 ITSFTSDDGSAAEMVMPGDRIKMTVELIQPIAIEQGMRFAIREGGRTIGAGVVSKIIE 409          
BLAST of CX296484 vs. ExPASy Swiss-Prot
Match: EFTU_EUGGR (Elongation factor Tu, chloroplastic OS=Euglena gracilis GN=tufA PE=1 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 2.946e-15
Identity = 37/59 (62.71%), Postives = 49/59 (83.05%), Query Frame = -1
Query:  401 RVSSIMTDKDAESKMVMPGDRVKMVVELIMPVACEQGMRFSIREGGKTVGAGVIQSIIE 577
            ++ S  +D D  ++MVMPGDR+KM VELI P+A E+GMRF+IREGG+TVGAGV+ SII+
Sbjct:  351 KIESFRSDNDNPAQMVMPGDRIKMKVELIQPIAIEKGMRFAIREGGRTVGAGVVLSIIQ 409          
BLAST of CX296484 vs. ExPASy Swiss-Prot
Match: EFTU_SYNJB (Elongation factor Tu OS=Synechococcus sp. GN=tuf PE=3 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 3.847e-15
Identity = 37/58 (63.79%), Postives = 47/58 (81.03%), Query Frame = -1
Query:  401 VSSIMTDKDAESKMVMPGDRVKMVVELIMPVACEQGMRFSIREGGKTVGAGVIQSIIE 574
            +SS   D  ++ +MVMPGDRVKM VELI P+A EQGMRF+IREGG+TVGAGV+  I++
Sbjct:  352 ISSFTADDGSQPEMVMPGDRVKMTVELIQPIAIEQGMRFAIREGGRTVGAGVVSKILK 409          
BLAST of CX296484 vs. ExPASy Swiss-Prot
Match: EFTU_MESVI (Elongation factor Tu, chloroplastic OS=Mesostigma viride GN=tufA PE=3 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 6.563e-15
Identity = 35/59 (59.32%), Postives = 48/59 (81.36%), Query Frame = -1
Query:  401 RVSSIMTDKDAESKMVMPGDRVKMVVELIMPVACEQGMRFSIREGGKTVGAGVIQSIIE 577
            ++ S   D  ++++MVMPGDRVKMVV LI P+A E+GMRF+IREGG+TVGAG++  I+E
Sbjct:  352 KIDSFKADDGSDTQMVMPGDRVKMVVSLIQPIAIEKGMRFAIREGGRTVGAGIVSEILE 410          
BLAST of CX296484 vs. ExPASy Swiss-Prot
Match: EFTU_LEPTE (Elongation factor Tu, chloroplastic OS=Leptosira terrestris GN=tufA PE=3 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 6.563e-15
Identity = 35/58 (60.34%), Postives = 48/58 (82.76%), Query Frame = -1
Query:  404 RVSSIMTDKDAESKMVMPGDRVKMVVELIMPVACEQGMRFSIREGGKTVGAGVIQSII 577
            ++ +  TD D  ++MVMPGDR+KM VELI P+A E+GMRF+IREGG+TVGAGV+ +I+
Sbjct:  351 KIETFRTDDDQPTQMVMPGDRIKMEVELIQPIAIEKGMRFAIREGGRTVGAGVVSAIV 408          
BLAST of CX296484 vs. ExPASy Swiss-Prot
Match: EFTU_CHLVU (Elongation factor Tu, chloroplastic OS=Chlorella vulgaris GN=tufA PE=3 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 8.571e-15
Identity = 34/58 (58.62%), Postives = 48/58 (82.76%), Query Frame = -1
Query:  404 RVSSIMTDKDAESKMVMPGDRVKMVVELIMPVACEQGMRFSIREGGKTVGAGVIQSII 577
            ++ S   D +  ++MVMPGDR+KM+VELI P+A E+GMRF+IREGG+TVGAGV+ +I+
Sbjct:  351 KIESFRADDNTATQMVMPGDRIKMIVELIQPIAIEKGMRFAIREGGRTVGAGVVSTIV 408          
BLAST of CX296484 vs. ExPASy Swiss-Prot
Match: EFTU_OLTVI (Elongation factor Tu, chloroplastic OS=Oltmannsiellopsis viridis GN=tufA PE=3 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 1.119e-14
Identity = 36/58 (62.07%), Postives = 48/58 (82.76%), Query Frame = -1
Query:  404 RVSSIMTDKDAESKMVMPGDRVKMVVELIMPVACEQGMRFSIREGGKTVGAGVIQSII 577
            ++ S + D  + S+MVMPGDRVKM+VELI P+A E+GMRF+IREGG+TVGAGV+  I+
Sbjct:  352 KIESFVADDGSASQMVMPGDRVKMLVELINPIAVEKGMRFAIREGGRTVGAGVVSEIL 409          
BLAST of CX296484 vs. ExPASy Swiss-Prot
Match: EFTU_CYACA (Elongation factor Tu, chloroplastic OS=Cyanidium caldarium GN=tufA PE=3 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 1.462e-14
Identity = 35/58 (60.34%), Postives = 46/58 (79.31%), Query Frame = -1
Query:  401 VSSIMTDKDAESKMVMPGDRVKMVVELIMPVACEQGMRFSIREGGKTVGAGVIQSIIE 574
            +S   TD    ++MV+PGDR+KM VELI PVA EQGMRF+IREGG+TVGAG++  I++
Sbjct:  353 ISQFTTDDGGSAEMVLPGDRIKMTVELIHPVAIEQGMRFAIREGGRTVGAGIVSKILD 410          
BLAST of CX296484 vs. ExPASy Swiss-Prot
Match: EFTU_TRIEI (Elongation factor Tu OS=Trichodesmium erythraeum (strain IMS101) GN=tuf PE=3 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 2.494e-14
Identity = 35/58 (60.34%), Postives = 46/58 (79.31%), Query Frame = -1
Query:  401 VSSIMTDKDAESKMVMPGDRVKMVVELIMPVACEQGMRFSIREGGKTVGAGVIQSIIE 574
            + S   D  + ++MVMPGDR+KM V+LI PVA EQGMRF+IREGG+T+GAGV+  I+E
Sbjct:  352 IESFTADDGSVAEMVMPGDRIKMTVQLINPVAIEQGMRFAIREGGRTIGAGVVSKIVE 409          
BLAST of CX296484 vs. ExPASy Swiss-Prot
Match: EFTU_SYNJA (Elongation factor Tu OS=Synechococcus sp. (strain JA-3-3Ab) GN=tuf PE=3 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 2.494e-14
Identity = 35/58 (60.34%), Postives = 47/58 (81.03%), Query Frame = -1
Query:  401 VSSIMTDKDAESKMVMPGDRVKMVVELIMPVACEQGMRFSIREGGKTVGAGVIQSIIE 574
            ++S   D  ++ +MVMPGDRV+M VELI P+A EQGMRF+IREGG+TVGAGV+  I++
Sbjct:  352 ITSFTADDGSKPEMVMPGDRVRMTVELIQPIAIEQGMRFAIREGGRTVGAGVVSKILK 409          
The following BLAST results are available for this feature:
BLAST of CX296484 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 360
Match NameE-valueIdentityDescription
EFTU_THEEB2.946e-1562.07Elongation factor Tu OS=Thermosynechococcus elonga... [more]
EFTU_EUGGR2.946e-1562.71Elongation factor Tu, chloroplastic OS=Euglena gra... [more]
EFTU_SYNJB3.847e-1563.79Elongation factor Tu OS=Synechococcus sp. GN=tuf P... [more]
EFTU_MESVI6.563e-1559.32Elongation factor Tu, chloroplastic OS=Mesostigma ... [more]
EFTU_LEPTE6.563e-1560.34Elongation factor Tu, chloroplastic OS=Leptosira t... [more]
EFTU_CHLVU8.571e-1558.62Elongation factor Tu, chloroplastic OS=Chlorella v... [more]
EFTU_OLTVI1.119e-1462.07Elongation factor Tu, chloroplastic OS=Oltmannsiel... [more]
EFTU_CYACA1.462e-1460.34Elongation factor Tu, chloroplastic OS=Cyanidium c... [more]
EFTU_TRIEI2.494e-1460.34Elongation factor Tu OS=Trichodesmium erythraeum (... [more]
EFTU_SYNJA2.494e-1460.34Elongation factor Tu OS=Synechococcus sp. (strain ... [more]

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Properties
Property NameValue
Genbank descriptionC05141F09SK FerrChloL1 Citrus clementina cDNA clone C05141F09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX296484 ID=CX296484; Name=CX296484; organism=Citrus clementina; type=EST; length=577bp
GCCGGCTCGCAAGACGAGTTCCCGACCCGGCTTATCAGCGCCTCCGAGGG
TATATACCCATCGCCCTCCCGATCCACCTCGCTCAGAATCGACGAGACCT
CCTCTTGGGCCGGGGGGGCCGCTCCGAGCCGGATCAAGAGCGCCTCCAGA
TCGCTTCTCAACACCACCCCGTCGTTGGCACTGTCGAGCAACTTACAAGC
CTGGACGAGGTCGTAATTCAAATCTAGCGAGATATCGGCCGACATGTCGG
ACCAGTCACCCGATATCTCGTGTAAGACACTAGTCCTCGTGCCGAATTCG
GCACGAGGTAATTCCGATAAAAACTTAAGAATATGAAGTATAACACCGCT
CAAAAAAGTAAACGATAATCCACTGCCCATGAGAGTTCCTAGTACTATCA
TTCAATGATGGACTGAATAACACCAGCTCCGACAGTCTTTCCTCCTTCTC
TGATGGAAAATCTCATCCCTTGCTCACAAGCCACTGGCATAATAAGCTCC
ACAACCATCTTGACACGGTCGCCAGGCATAACCATCTTGGACTCCGCGTC
CTTGTCGGTCATAATAGAAGACACCCT
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