CX296484

Overview
NameCX296484
Unique NameCX296484
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length577
Libraries
Library NameType
FerrChloL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX296484 vs. ExPASy Swiss-Prot
Match: EFTU_SYNP6 (Elongation factor Tu OS=Synechococcus sp. (strain ATCC 27144 / PCC 6301 / SAUG 1402/1) GN=tuf PE=3 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 9.476e-14
Identity = 33/58 (56.90%), Postives = 46/58 (79.31%), Query Frame = -1
Query:  401 VSSIMTDKDAESKMVMPGDRVKMVVELIMPVACEQGMRFSIREGGKTVGAGVIQSIIE 574
            +S    D  + ++MV+PGDR+KM VELI P+A EQGMRF+IREGG+T+GAGV+  I++
Sbjct:  352 ISDFTADDGSAAEMVIPGDRIKMTVELINPIAIEQGMRFAIREGGRTIGAGVVSKILQ 409          
BLAST of CX296484 vs. ExPASy Swiss-Prot
Match: EFTU_SYNE7 (Elongation factor Tu OS=Synechococcus elongatus (strain PCC 7942) GN=tuf PE=3 SV=2)

HSP 1 Score: 76.6406 bits (187), Expect = 9.476e-14
Identity = 33/58 (56.90%), Postives = 46/58 (79.31%), Query Frame = -1
Query:  401 VSSIMTDKDAESKMVMPGDRVKMVVELIMPVACEQGMRFSIREGGKTVGAGVIQSIIE 574
            +S    D  + ++MV+PGDR+KM VELI P+A EQGMRF+IREGG+T+GAGV+  I++
Sbjct:  352 ISDFTADDGSAAEMVIPGDRIKMTVELINPIAIEQGMRFAIREGGRTIGAGVVSKILQ 409          
BLAST of CX296484 vs. ExPASy Swiss-Prot
Match: EFTU_SYNY3 (Elongation factor Tu OS=Synechocystis sp. (strain PCC 6803) GN=tuf PE=1 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 1.238e-13
Identity = 34/58 (58.62%), Postives = 45/58 (77.59%), Query Frame = -1
Query:  401 VSSIMTDKDAESKMVMPGDRVKMVVELIMPVACEQGMRFSIREGGKTVGAGVIQSIIE 574
            + S   D  +  +MVMPGDR+KM VELI P+A EQGMRF+IREGG+T+GAGV+  I++
Sbjct:  342 IKSYTADDGSAVEMVMPGDRIKMTVELINPIAIEQGMRFAIREGGRTIGAGVVSKILK 399          
BLAST of CX296484 vs. ExPASy Swiss-Prot
Match: EFTU_GRATL (Elongation factor Tu, chloroplastic OS=Gracilaria tenuistipitata var. liui GN=tufA PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 1.238e-13
Identity = 34/58 (58.62%), Postives = 45/58 (77.59%), Query Frame = -1
Query:  401 VSSIMTDKDAESKMVMPGDRVKMVVELIMPVACEQGMRFSIREGGKTVGAGVIQSIIE 574
            ++    D  + ++MVMPGDR+KM  ELI P+A EQGMRF+IREGG+TVGAGV+  I+E
Sbjct:  352 ITQFTADDGSAAEMVMPGDRIKMSAELINPIAIEQGMRFAIREGGRTVGAGVVSKILE 409          
BLAST of CX296484 vs. ExPASy Swiss-Prot
Match: EFTU_PROM2 (Elongation factor Tu OS=Prochlorococcus marinus (strain MIT 9215) GN=tuf PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 1.616e-13
Identity = 34/59 (57.63%), Postives = 47/59 (79.66%), Query Frame = -1
Query:  401 RVSSIMTDKDAESKMVMPGDRVKMVVELIMPVACEQGMRFSIREGGKTVGAGVIQSIIE 577
            ++++  +D  +  +MVMPGDR+KM  ELI PVA EQGMRF+IREGG+T+GAGV+  II+
Sbjct:  341 QITAFTSDDGSNVEMVMPGDRIKMTGELICPVAIEQGMRFAIREGGRTIGAGVVSKIIK 399          
BLAST of CX296484 vs. ExPASy Swiss-Prot
Match: EFTU_EMIHU (Elongation factor Tu, chloroplastic OS=Emiliania huxleyi GN=tufA PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 1.616e-13
Identity = 34/52 (65.38%), Postives = 43/52 (82.69%), Query Frame = -1
Query:  401 DKDAESKMVMPGDRVKMVVELIMPVACEQGMRFSIREGGKTVGAGVIQSIIE 556
            D  + ++MVMPGDR+KM  ELI P+A EQGMRF+IREGG+TVGAGV+  I+E
Sbjct:  356 DDGSAAEMVMPGDRIKMTAELINPIAIEQGMRFAIREGGRTVGAGVVSKILE 407          
BLAST of CX296484 vs. ExPASy Swiss-Prot
Match: EFTU_PROMA (Elongation factor Tu OS=Prochlorococcus marinus GN=tuf PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 2.111e-13
Identity = 34/59 (57.63%), Postives = 46/59 (77.97%), Query Frame = -1
Query:  401 RVSSIMTDKDAESKMVMPGDRVKMVVELIMPVACEQGMRFSIREGGKTVGAGVIQSIIE 577
            ++++   D  +  +MVMPGDR+KM  ELI PVA EQGMRF+IREGG+T+GAGV+  II+
Sbjct:  341 QITAFTADDGSSVEMVMPGDRIKMTGELICPVAIEQGMRFAIREGGRTIGAGVVSKIIK 399          
BLAST of CX296484 vs. ExPASy Swiss-Prot
Match: EFTU_PROM4 (Elongation factor Tu OS=Prochlorococcus marinus (strain MIT 9211) GN=tuf PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 2.111e-13
Identity = 34/59 (57.63%), Postives = 46/59 (77.97%), Query Frame = -1
Query:  401 RVSSIMTDKDAESKMVMPGDRVKMVVELIMPVACEQGMRFSIREGGKTVGAGVIQSIIE 577
            ++++   D  +  +MVMPGDR+KM  ELI PVA EQGMRF+IREGG+T+GAGV+  II+
Sbjct:  341 QITAFTADDGSNVEMVMPGDRIKMTGELICPVAIEQGMRFAIREGGRTIGAGVVSKIIK 399          
BLAST of CX296484 vs. ExPASy Swiss-Prot
Match: EFTU_NOSP7 (Elongation factor Tu OS=Nostoc punctiforme (strain ATCC 29133 / PCC 73102) GN=tuf PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 2.111e-13
Identity = 34/58 (58.62%), Postives = 46/58 (79.31%), Query Frame = -1
Query:  401 VSSIMTDKDAESKMVMPGDRVKMVVELIMPVACEQGMRFSIREGGKTVGAGVIQSIIE 574
            + +  +D+  E +MVMPGDR+KM VELI  +A EQGMRF+IREGG+T+GAGV+  II+
Sbjct:  352 IKAYTSDEGKEVEMVMPGDRIKMTVELINAIAIEQGMRFAIREGGRTIGAGVVSKIIK 409          
BLAST of CX296484 vs. ExPASy Swiss-Prot
Match: EFTU_GUITH (Elongation factor Tu, chloroplastic OS=Guillardia theta GN=tufA PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 2.111e-13
Identity = 33/58 (56.90%), Postives = 46/58 (79.31%), Query Frame = -1
Query:  401 VSSIMTDKDAESKMVMPGDRVKMVVELIMPVACEQGMRFSIREGGKTVGAGVIQSIIE 574
            ++   +D  + ++MVMPGDR+KM  +LI P+A E+GMRF+IREGG+TVGAGV+  IIE
Sbjct:  351 IAQFTSDDGSTAEMVMPGDRIKMTAQLIHPIAIEKGMRFAIREGGRTVGAGVVSKIIE 408          
The following BLAST results are available for this feature:
BLAST of CX296484 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 360
Match NameE-valueIdentityDescription
EFTU_SYNP69.476e-1456.90Elongation factor Tu OS=Synechococcus sp. (strain ... [more]
EFTU_SYNE79.476e-1456.90Elongation factor Tu OS=Synechococcus elongatus (s... [more]
EFTU_SYNY31.238e-1358.62Elongation factor Tu OS=Synechocystis sp. (strain ... [more]
EFTU_GRATL1.238e-1358.62Elongation factor Tu, chloroplastic OS=Gracilaria ... [more]
EFTU_PROM21.616e-1357.63Elongation factor Tu OS=Prochlorococcus marinus (s... [more]
EFTU_EMIHU1.616e-1365.38Elongation factor Tu, chloroplastic OS=Emiliania h... [more]
EFTU_PROMA2.111e-1357.63Elongation factor Tu OS=Prochlorococcus marinus GN... [more]
EFTU_PROM42.111e-1357.63Elongation factor Tu OS=Prochlorococcus marinus (s... [more]
EFTU_NOSP72.111e-1358.62Elongation factor Tu OS=Nostoc punctiforme (strain... [more]
EFTU_GUITH2.111e-1356.90Elongation factor Tu, chloroplastic OS=Guillardia ... [more]

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Properties
Property NameValue
Genbank descriptionC05141F09SK FerrChloL1 Citrus clementina cDNA clone C05141F09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX296484 ID=CX296484; Name=CX296484; organism=Citrus clementina; type=EST; length=577bp
GCCGGCTCGCAAGACGAGTTCCCGACCCGGCTTATCAGCGCCTCCGAGGG
TATATACCCATCGCCCTCCCGATCCACCTCGCTCAGAATCGACGAGACCT
CCTCTTGGGCCGGGGGGGCCGCTCCGAGCCGGATCAAGAGCGCCTCCAGA
TCGCTTCTCAACACCACCCCGTCGTTGGCACTGTCGAGCAACTTACAAGC
CTGGACGAGGTCGTAATTCAAATCTAGCGAGATATCGGCCGACATGTCGG
ACCAGTCACCCGATATCTCGTGTAAGACACTAGTCCTCGTGCCGAATTCG
GCACGAGGTAATTCCGATAAAAACTTAAGAATATGAAGTATAACACCGCT
CAAAAAAGTAAACGATAATCCACTGCCCATGAGAGTTCCTAGTACTATCA
TTCAATGATGGACTGAATAACACCAGCTCCGACAGTCTTTCCTCCTTCTC
TGATGGAAAATCTCATCCCTTGCTCACAAGCCACTGGCATAATAAGCTCC
ACAACCATCTTGACACGGTCGCCAGGCATAACCATCTTGGACTCCGCGTC
CTTGTCGGTCATAATAGAAGACACCCT
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