CX296484

Overview
NameCX296484
Unique NameCX296484
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length577
Libraries
Library NameType
FerrChloL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX296484 vs. ExPASy Swiss-Prot
Match: EFTU_CYAP7 (Elongation factor Tu OS=Cyanothece sp. (strain PCC 7424) GN=tuf PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 2.111e-13
Identity = 34/52 (65.38%), Postives = 43/52 (82.69%), Query Frame = -1
Query:  401 DKDAESKMVMPGDRVKMVVELIMPVACEQGMRFSIREGGKTVGAGVIQSIIE 556
            D  +  +MVMPGDR+KM VELI P+A EQGMRF+IREGG+T+GAGV+  II+
Sbjct:  359 DDGSAVEMVMPGDRIKMTVELINPIAIEQGMRFAIREGGRTIGAGVVSKIIQ 410          
BLAST of CX296484 vs. ExPASy Swiss-Prot
Match: EFTU_PROMS (Elongation factor Tu OS=Prochlorococcus marinus (strain AS9601) GN=tuf PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 2.757e-13
Identity = 33/59 (55.93%), Postives = 47/59 (79.66%), Query Frame = -1
Query:  401 RVSSIMTDKDAESKMVMPGDRVKMVVELIMPVACEQGMRFSIREGGKTVGAGVIQSIIE 577
            ++++  +D  +  +MVMPGDR+KM  ELI PVA EQGMRF+IREGG+T+GAGV+  I++
Sbjct:  341 QITAFTSDDGSNVEMVMPGDRIKMTGELICPVAIEQGMRFAIREGGRTIGAGVVSKILK 399          
BLAST of CX296484 vs. ExPASy Swiss-Prot
Match: EFTU_PROM9 (Elongation factor Tu OS=Prochlorococcus marinus (strain MIT 9312) GN=tuf PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 2.757e-13
Identity = 33/59 (55.93%), Postives = 47/59 (79.66%), Query Frame = -1
Query:  401 RVSSIMTDKDAESKMVMPGDRVKMVVELIMPVACEQGMRFSIREGGKTVGAGVIQSIIE 577
            ++++  +D  +  +MVMPGDR+KM  ELI PVA EQGMRF+IREGG+T+GAGV+  I++
Sbjct:  341 QITAFTSDDGSNVEMVMPGDRIKMTGELICPVAIEQGMRFAIREGGRTIGAGVVSKILK 399          
BLAST of CX296484 vs. ExPASy Swiss-Prot
Match: EFTU_PROM0 (Elongation factor Tu OS=Prochlorococcus marinus (strain MIT 9301) GN=tuf PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 2.757e-13
Identity = 33/59 (55.93%), Postives = 47/59 (79.66%), Query Frame = -1
Query:  401 RVSSIMTDKDAESKMVMPGDRVKMVVELIMPVACEQGMRFSIREGGKTVGAGVIQSIIE 577
            ++++  +D  +  +MVMPGDR+KM  ELI PVA EQGMRF+IREGG+T+GAGV+  I++
Sbjct:  341 QITAFTSDDGSNVEMVMPGDRIKMTGELICPVAIEQGMRFAIREGGRTIGAGVVSKILK 399          
BLAST of CX296484 vs. ExPASy Swiss-Prot
Match: EFTU_CYAA5 (Elongation factor Tu OS=Cyanothece sp. (strain ATCC 51142) GN=tuf PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 2.757e-13
Identity = 33/58 (56.90%), Postives = 44/58 (75.86%), Query Frame = -1
Query:  401 VSSIMTDKDAESKMVMPGDRVKMVVELIMPVACEQGMRFSIREGGKTVGAGVIQSIIE 574
            +     D  +  +MVMPGDR+KM VELI P+A EQGMRF+IREGG+T+GAGV+  I++
Sbjct:  352 IQDYTADDGSAVEMVMPGDRIKMTVELISPIAIEQGMRFAIREGGRTIGAGVVSKILK 409          
BLAST of CX296484 vs. ExPASy Swiss-Prot
Match: EFTU_BIGNA (Elongation factor Tu, chloroplastic OS=Bigelowiella natans GN=tufA PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 2.757e-13
Identity = 33/59 (55.93%), Postives = 49/59 (83.05%), Query Frame = -1
Query:  404 RVSSIMTDKD-AESKMVMPGDRVKMVVELIMPVACEQGMRFSIREGGKTVGAGVIQSII 577
            ++ S+ +D+D  E +MV+PGDRV M VEL+ P+A E+GMRF+IREGG+TVGAGV+ +++
Sbjct:  351 KIESLKSDEDNTEMRMVVPGDRVTMSVELVQPIAIEKGMRFAIREGGRTVGAGVVSNVV 409          
BLAST of CX296484 vs. ExPASy Swiss-Prot
Match: EFTU_SYNPX (Elongation factor Tu OS=Synechococcus sp. (strain WH8102) GN=tuf PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 3.601e-13
Identity = 34/59 (57.63%), Postives = 45/59 (76.27%), Query Frame = -1
Query:  401 RVSSIMTDKDAESKMVMPGDRVKMVVELIMPVACEQGMRFSIREGGKTVGAGVIQSIIE 577
            ++++   D  +  +MVMPGDR+KM  ELI PVA E GMRF+IREGG+T+GAGV+  IIE
Sbjct:  341 QITAFTADDGSAVEMVMPGDRIKMTGELICPVAMENGMRFAIREGGRTIGAGVVSKIIE 399          
BLAST of CX296484 vs. ExPASy Swiss-Prot
Match: EFTU_MICAN (Elongation factor Tu OS=Microcystis aeruginosa (strain NIES-843) GN=tuf PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 3.601e-13
Identity = 34/58 (58.62%), Postives = 44/58 (75.86%), Query Frame = -1
Query:  401 VSSIMTDKDAESKMVMPGDRVKMVVELIMPVACEQGMRFSIREGGKTVGAGVIQSIIE 574
            +     D  +  +MVMPGDR+KM VELI P+A EQGMRF+IREGG+T+G+GVI  II+
Sbjct:  352 IQDYTADDGSTVEMVMPGDRIKMTVELINPIAIEQGMRFAIREGGRTIGSGVISKIIK 409          
BLAST of CX296484 vs. ExPASy Swiss-Prot
Match: EFTU_CYAPA (Elongation factor Tu, cyanelle OS=Cyanophora paradoxa GN=tufA PE=3 SV=2)

HSP 1 Score: 74.7146 bits (182), Expect = 3.601e-13
Identity = 31/58 (53.45%), Postives = 45/58 (77.59%), Query Frame = -1
Query:  401 VSSIMTDKDAESKMVMPGDRVKMVVELIMPVACEQGMRFSIREGGKTVGAGVIQSIIE 574
            + +   D  + ++MVMPGDR+KM V L+ P+A EQGMRF+IREGG+T+GAGV+  I++
Sbjct:  352 IDAFTADDGSNAEMVMPGDRIKMTVSLVHPIAIEQGMRFAIREGGRTIGAGVVSKILK 409          
BLAST of CX296484 vs. ExPASy Swiss-Prot
Match: EFTU_CYAP8 (Elongation factor Tu OS=Cyanothece sp. (strain PCC 8801) GN=tuf PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 3.601e-13
Identity = 33/53 (62.26%), Postives = 44/53 (83.02%), Query Frame = -1
Query:  401 TDKDAESKMVMPGDRVKMVVELIMPVACEQGMRFSIREGGKTVGAGVIQSIIE 559
            +D+    +MVMPGDR+KM VELI P+A EQGMRF+IREGG+T+GAGV+  I++
Sbjct:  357 SDEGETVEMVMPGDRIKMTVELINPIAIEQGMRFAIREGGRTIGAGVVSKILK 409          
The following BLAST results are available for this feature:
BLAST of CX296484 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 360
Match NameE-valueIdentityDescription
EFTU_CYAP72.111e-1365.38Elongation factor Tu OS=Cyanothece sp. (strain PCC... [more]
EFTU_PROMS2.757e-1355.93Elongation factor Tu OS=Prochlorococcus marinus (s... [more]
EFTU_PROM92.757e-1355.93Elongation factor Tu OS=Prochlorococcus marinus (s... [more]
EFTU_PROM02.757e-1355.93Elongation factor Tu OS=Prochlorococcus marinus (s... [more]
EFTU_CYAA52.757e-1356.90Elongation factor Tu OS=Cyanothece sp. (strain ATC... [more]
EFTU_BIGNA2.757e-1355.93Elongation factor Tu, chloroplastic OS=Bigelowiell... [more]
EFTU_SYNPX3.601e-1357.63Elongation factor Tu OS=Synechococcus sp. (strain ... [more]
EFTU_MICAN3.601e-1358.62Elongation factor Tu OS=Microcystis aeruginosa (st... [more]
EFTU_CYAPA3.601e-1353.45Elongation factor Tu, cyanelle OS=Cyanophora parad... [more]
EFTU_CYAP83.601e-1362.26Elongation factor Tu OS=Cyanothece sp. (strain PCC... [more]

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Properties
Property NameValue
Genbank descriptionC05141F09SK FerrChloL1 Citrus clementina cDNA clone C05141F09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX296484 ID=CX296484; Name=CX296484; organism=Citrus clementina; type=EST; length=577bp
GCCGGCTCGCAAGACGAGTTCCCGACCCGGCTTATCAGCGCCTCCGAGGG
TATATACCCATCGCCCTCCCGATCCACCTCGCTCAGAATCGACGAGACCT
CCTCTTGGGCCGGGGGGGCCGCTCCGAGCCGGATCAAGAGCGCCTCCAGA
TCGCTTCTCAACACCACCCCGTCGTTGGCACTGTCGAGCAACTTACAAGC
CTGGACGAGGTCGTAATTCAAATCTAGCGAGATATCGGCCGACATGTCGG
ACCAGTCACCCGATATCTCGTGTAAGACACTAGTCCTCGTGCCGAATTCG
GCACGAGGTAATTCCGATAAAAACTTAAGAATATGAAGTATAACACCGCT
CAAAAAAGTAAACGATAATCCACTGCCCATGAGAGTTCCTAGTACTATCA
TTCAATGATGGACTGAATAACACCAGCTCCGACAGTCTTTCCTCCTTCTC
TGATGGAAAATCTCATCCCTTGCTCACAAGCCACTGGCATAATAAGCTCC
ACAACCATCTTGACACGGTCGCCAGGCATAACCATCTTGGACTCCGCGTC
CTTGTCGGTCATAATAGAAGACACCCT
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