CX296484

Overview
NameCX296484
Unique NameCX296484
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length577
Libraries
Library NameType
FerrChloL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX296484 vs. ExPASy Swiss-Prot
Match: EFTU_KOSOT (Elongation factor Tu OS=Kosmotoga olearia (strain TBF 19.5.1) GN=tuf PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 3.048e-12
Identity = 35/58 (60.34%), Postives = 43/58 (74.14%), Query Frame = -1
Query:  401 VSSIMTDKDAESKMVMPGDRVKMVVELIMPVACEQGMRFSIREGGKTVGAGVIQSIIE 574
            V+  + D     +MVMPGD V M VELI PVA E+GMRF++REGG+TVGAGV+  IIE
Sbjct:  342 VTGELVDLPEGVEMVMPGDNVVMTVELIYPVAIEKGMRFAVREGGRTVGAGVVSEIIE 399          
BLAST of CX296484 vs. ExPASy Swiss-Prot
Match: EFTU_CYCME (Elongation factor Tu, chloroplastic OS=Cyclotella meneghiniana GN=tufA PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 3.048e-12
Identity = 32/58 (55.17%), Postives = 42/58 (72.41%), Query Frame = -1
Query:  401 VSSIMTDKDAESKMVMPGDRVKMVVELIMPVACEQGMRFSIREGGKTVGAGVIQSIIE 574
            +     D  +  +MVMPGDR+KM  ELI PVA E+GMRF IREGG+T+GAGV+  I++
Sbjct:  352 IDQFTADDGSIVEMVMPGDRIKMTAELIYPVAIEEGMRFVIREGGRTIGAGVVSKIVK 409          
BLAST of CX296484 vs. ExPASy Swiss-Prot
Match: EFTU_SCEOB (Elongation factor Tu, chloroplastic OS=Scenedesmus obliquus GN=tufA PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 3.981e-12
Identity = 31/51 (60.78%), Postives = 44/51 (86.27%), Query Frame = -1
Query:  401 KDAESKMVMPGDRVKMVVELIMPVACEQGMRFSIREGGKTVGAGVIQSIIE 553
            ++  +KM MPGDR+++ V+LI PVA E+GMRF+IREGG+TVGAGV+ +I+E
Sbjct:  368 EEHSNKMAMPGDRIEVTVQLIYPVAVEKGMRFAIREGGRTVGAGVVTNILE 418          
BLAST of CX296484 vs. ExPASy Swiss-Prot
Match: EFTU2_ROSCS (Elongation factor Tu 2 OS=Roseiflexus castenholzii (strain DSM 13941 / HLO8) GN=tuf2 PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 3.981e-12
Identity = 30/46 (65.22%), Postives = 43/46 (93.48%), Query Frame = -1
Query:  401 KMVMPGDRVKMVVELIMPVACEQGMRFSIREGGKTVGAGVIQSIIE 538
            +MVMPGD ++M+VELI+PVA E+G+RF+IREGG+TVGAGV+ +I++
Sbjct:  356 EMVMPGDNIEMLVELIVPVAIEEGLRFAIREGGRTVGAGVVSAIVD 401          
BLAST of CX296484 vs. ExPASy Swiss-Prot
Match: EFTU1_ROSCS (Elongation factor Tu 1 OS=Roseiflexus castenholzii (strain DSM 13941 / HLO8) GN=tuf1 PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 3.981e-12
Identity = 30/46 (65.22%), Postives = 43/46 (93.48%), Query Frame = -1
Query:  401 KMVMPGDRVKMVVELIMPVACEQGMRFSIREGGKTVGAGVIQSIIE 538
            +MVMPGD ++M+VELI+PVA E+G+RF+IREGG+TVGAGV+ +I++
Sbjct:  356 EMVMPGDNIEMLVELIVPVAIEEGLRFAIREGGRTVGAGVVSAIVD 401          
BLAST of CX296484 vs. ExPASy Swiss-Prot
Match: EFTU1_HALHL (Elongation factor Tu 1 OS=Halorhodospira halophila (strain DSM 244 / SL1) GN=tuf1 PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 3.981e-12
Identity = 32/47 (68.09%), Postives = 40/47 (85.11%), Query Frame = -1
Query:  401 SKMVMPGDRVKMVVELIMPVACEQGMRFSIREGGKTVGAGVIQSIIE 541
            ++MVMPGD VKM V+LI P+A E G+RF+IREGG+TVGAGV+  IIE
Sbjct:  350 TEMVMPGDNVKMTVQLIAPIAMEDGLRFAIREGGRTVGAGVVSKIIE 396          
BLAST of CX296484 vs. ExPASy Swiss-Prot
Match: EFTU_THEM4 (Elongation factor Tu OS=Thermosipho melanesiensis (strain BI429 / DSM 12029) GN=tuf PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 5.200e-12
Identity = 33/58 (56.90%), Postives = 46/58 (79.31%), Query Frame = -1
Query:  401 VSSIMTDKDAESKMVMPGDRVKMVVELIMPVACEQGMRFSIREGGKTVGAGVIQSIIE 574
            V+  + +  A  +MVMPGD V+M ++LI PVA E+GMRF+IREGG+TVGAGV+ +I+E
Sbjct:  343 VTGELIEFPAGVEMVMPGDNVEMTIKLIYPVAIEEGMRFAIREGGRTVGAGVVTAIVE 400          
BLAST of CX296484 vs. ExPASy Swiss-Prot
Match: EFTU_SPIPL (Elongation factor Tu OS=Spirulina platensis GN=tuf PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 5.200e-12
Identity = 31/57 (54.39%), Postives = 42/57 (73.68%), Query Frame = -1
Query:  404 VSSIMTDKDAESKMVMPGDRVKMVVELIMPVACEQGMRFSIREGGKTVGAGVIQSII 574
            +     D  +  +MV+PGDR+ M V+LI P+A EQGMRF+IREGG+TVGAGV+  I+
Sbjct:  353 IDEFTADDGSTPEMVIPGDRINMTVQLICPIAIEQGMRFAIREGGRTVGAGVVAKIL 409          
BLAST of CX296484 vs. ExPASy Swiss-Prot
Match: EFTU_PHATR (Elongation factor Tu, chloroplastic OS=Phaeodactylum tricornutum GN=tufA PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 5.200e-12
Identity = 31/58 (53.45%), Postives = 42/58 (72.41%), Query Frame = -1
Query:  401 VSSIMTDKDAESKMVMPGDRVKMVVELIMPVACEQGMRFSIREGGKTVGAGVIQSIIE 574
            ++    D  +  +MVMPGDR+KM  E I PVA E GMRF+IREGG+T+GAGV+  I++
Sbjct:  352 ITQFTADDGSVVEMVMPGDRIKMTAEFIYPVAIEAGMRFAIREGGRTIGAGVVSKIVK 409          
BLAST of CX296484 vs. ExPASy Swiss-Prot
Match: EFTU_DICNV (Elongation factor Tu OS=Dichelobacter nodosus (strain VCS1703A) GN=tuf PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 5.200e-12
Identity = 31/46 (67.39%), Postives = 41/46 (89.13%), Query Frame = -1
Query:  401 KMVMPGDRVKMVVELIMPVACEQGMRFSIREGGKTVGAGVIQSIIE 538
            +MVMPGD VKM+V+LI P+A ++G+RF+IREGG+TVGAGV+  IIE
Sbjct:  351 EMVMPGDNVKMIVQLIHPIAMDEGLRFAIREGGRTVGAGVVAKIIE 396          
The following BLAST results are available for this feature:
BLAST of CX296484 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 360
Match NameE-valueIdentityDescription
EFTU_KOSOT3.048e-1260.34Elongation factor Tu OS=Kosmotoga olearia (strain ... [more]
EFTU_CYCME3.048e-1255.17Elongation factor Tu, chloroplastic OS=Cyclotella ... [more]
EFTU_SCEOB3.981e-1260.78Elongation factor Tu, chloroplastic OS=Scenedesmus... [more]
EFTU2_ROSCS3.981e-1265.22Elongation factor Tu 2 OS=Roseiflexus castenholzii... [more]
EFTU1_ROSCS3.981e-1265.22Elongation factor Tu 1 OS=Roseiflexus castenholzii... [more]
EFTU1_HALHL3.981e-1268.09Elongation factor Tu 1 OS=Halorhodospira halophila... [more]
EFTU_THEM45.200e-1256.90Elongation factor Tu OS=Thermosipho melanesiensis ... [more]
EFTU_SPIPL5.200e-1254.39Elongation factor Tu OS=Spirulina platensis GN=tuf... [more]
EFTU_PHATR5.200e-1253.45Elongation factor Tu, chloroplastic OS=Phaeodactyl... [more]
EFTU_DICNV5.200e-1267.39Elongation factor Tu OS=Dichelobacter nodosus (str... [more]

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Properties
Property NameValue
Genbank descriptionC05141F09SK FerrChloL1 Citrus clementina cDNA clone C05141F09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX296484 ID=CX296484; Name=CX296484; organism=Citrus clementina; type=EST; length=577bp
GCCGGCTCGCAAGACGAGTTCCCGACCCGGCTTATCAGCGCCTCCGAGGG
TATATACCCATCGCCCTCCCGATCCACCTCGCTCAGAATCGACGAGACCT
CCTCTTGGGCCGGGGGGGCCGCTCCGAGCCGGATCAAGAGCGCCTCCAGA
TCGCTTCTCAACACCACCCCGTCGTTGGCACTGTCGAGCAACTTACAAGC
CTGGACGAGGTCGTAATTCAAATCTAGCGAGATATCGGCCGACATGTCGG
ACCAGTCACCCGATATCTCGTGTAAGACACTAGTCCTCGTGCCGAATTCG
GCACGAGGTAATTCCGATAAAAACTTAAGAATATGAAGTATAACACCGCT
CAAAAAAGTAAACGATAATCCACTGCCCATGAGAGTTCCTAGTACTATCA
TTCAATGATGGACTGAATAACACCAGCTCCGACAGTCTTTCCTCCTTCTC
TGATGGAAAATCTCATCCCTTGCTCACAAGCCACTGGCATAATAAGCTCC
ACAACCATCTTGACACGGTCGCCAGGCATAACCATCTTGGACTCCGCGTC
CTTGTCGGTCATAATAGAAGACACCCT
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