CX296504

Overview
NameCX296504
Unique NameCX296504
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length288
Libraries
Library NameType
FerrChloL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX296504 vs. ExPASy Swiss-Prot
Match: RS12_THECE (30S ribosomal protein S12P OS=Thermococcus celer GN=rps12p PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 7.130e-14
Identity = 37/61 (60.66%), Postives = 48/61 (78.69%), Query Frame = 2
Query:    5 LIKNGKKIAAFVPNDGCLNYIEENDEVLIAGF-GRKGHAVGDIPGVRFKVVKVSGVSLLAL 184
            LIKNGK + AF P DG +N+I+E+DEV+I G  G KG ++GDIPG+R+KVVKV+ VSL  L
Sbjct:   77 LIKNGKVVTAFTPGDGAINHIDEHDEVIIEGIGGPKGGSMGDIPGIRYKVVKVNRVSLKEL 137          
BLAST of CX296504 vs. ExPASy Swiss-Prot
Match: RS12_PYRKO (30S ribosomal protein S12P OS=Pyrococcus kodakaraensis GN=rps12p PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 7.130e-14
Identity = 37/61 (60.66%), Postives = 48/61 (78.69%), Query Frame = 2
Query:    5 LIKNGKKIAAFVPNDGCLNYIEENDEVLIAGF-GRKGHAVGDIPGVRFKVVKVSGVSLLAL 184
            LIKNGK + AF P DG +N+I+E+DEV+I G  G KG ++GDIPG+R+KVVKV+ VSL  L
Sbjct:   77 LIKNGKVVTAFTPGDGAINHIDEHDEVIIEGIGGPKGGSMGDIPGIRYKVVKVNRVSLKEL 137          
BLAST of CX296504 vs. ExPASy Swiss-Prot
Match: RS12_PYRHO (30S ribosomal protein S12P OS=Pyrococcus horikoshii GN=rps12p PE=3 SV=2)

HSP 1 Score: 75.8702 bits (185), Expect = 7.130e-14
Identity = 37/61 (60.66%), Postives = 48/61 (78.69%), Query Frame = 2
Query:    5 LIKNGKKIAAFVPNDGCLNYIEENDEVLIAGF-GRKGHAVGDIPGVRFKVVKVSGVSLLAL 184
            LIKNGK + AF P DG +N+I+E+DEV+I G  G KG ++GDIPG+R+KVVKV+ VSL  L
Sbjct:   77 LIKNGKVVTAFCPGDGAINFIDEHDEVIIEGIGGPKGGSMGDIPGIRYKVVKVNRVSLKEL 137          
BLAST of CX296504 vs. ExPASy Swiss-Prot
Match: RS12_IGNH4 (30S ribosomal protein S12P OS=Ignicoccus hospitalis (strain KIN4/I / DSM 18386 / JCM 14125) GN=rps12p PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 9.312e-14
Identity = 38/61 (62.30%), Postives = 48/61 (78.69%), Query Frame = 2
Query:    5 LIKNGKKIAAFVPNDGCLNYIEENDEVLIAGF-GRKGHAVGDIPGVRFKVVKVSGVSLLAL 184
            L+KNGK + AFVP DG LN I E+DEV+I G  G +G ++GDIPGVR+KVV V+GVSL A+
Sbjct:   77 LVKNGKVVTAFVPGDGGLNVISEHDEVVIVGIGGPRGRSMGDIPGVRYKVVLVNGVSLDAI 137          
BLAST of CX296504 vs. ExPASy Swiss-Prot
Match: RS12_NATPD (30S ribosomal protein S12P OS=Natronomonas pharaonis (strain DSM 2160 / ATCC 35678) GN=rps12p PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 1.216e-13
Identity = 36/61 (59.02%), Postives = 48/61 (78.69%), Query Frame = 2
Query:    5 LIKNGKKIAAFVPNDGCLNYIEENDEVLIAGF-GRKGHAVGDIPGVRFKVVKVSGVSLLAL 184
            LIKNGK++ AF P DG +++I+E+DEV IAG  G KG A+GD+ GV +KV KV+GVSL+ L
Sbjct:   72 LIKNGKQVTAFCPGDGAISFIDEHDEVTIAGIGGAKGRAMGDLSGVNYKVEKVNGVSLIEL 132          
BLAST of CX296504 vs. ExPASy Swiss-Prot
Match: RS12_HALWD (30S ribosomal protein S12P OS=Haloquadratum walsbyi (strain DSM 16790) GN=rps12p PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 1.216e-13
Identity = 36/61 (59.02%), Postives = 48/61 (78.69%), Query Frame = 2
Query:    5 LIKNGKKIAAFVPNDGCLNYIEENDEVLIAGF-GRKGHAVGDIPGVRFKVVKVSGVSLLAL 184
            LIKNGK++ AF P DG +++I+E+DEV IAG  G KG A+GD+ GV +KV KV+GVSL+ L
Sbjct:   72 LIKNGKQVTAFCPGDGAISFIDEHDEVTIAGIGGAKGRAMGDLSGVNYKVEKVNGVSLIEL 132          
BLAST of CX296504 vs. ExPASy Swiss-Prot
Match: RS12_HALSA (30S ribosomal protein S12P OS=Halobacterium salinarium GN=rps12p PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 1.216e-13
Identity = 36/61 (59.02%), Postives = 48/61 (78.69%), Query Frame = 2
Query:    5 LIKNGKKIAAFVPNDGCLNYIEENDEVLIAGF-GRKGHAVGDIPGVRFKVVKVSGVSLLAL 184
            LIKNGK++ AF P DG +++I+E+DEV IAG  G KG A+GD+ GV +KV KV+GVSL+ L
Sbjct:   72 LIKNGKQVTAFCPGDGAISFIDEHDEVTIAGIGGAKGRAMGDLSGVNYKVEKVNGVSLIEL 132          
BLAST of CX296504 vs. ExPASy Swiss-Prot
Match: RS12_HALMA (30S ribosomal protein S12P OS=Haloarcula marismortui GN=rps12p PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 1.216e-13
Identity = 36/61 (59.02%), Postives = 48/61 (78.69%), Query Frame = 2
Query:    5 LIKNGKKIAAFVPNDGCLNYIEENDEVLIAGF-GRKGHAVGDIPGVRFKVVKVSGVSLLAL 184
            LIKNGK++ AF P DG +++I+E+DEV IAG  G KG A+GD+ GV +KV KV+GVSL+ L
Sbjct:   72 LIKNGKQVTAFCPGDGAISFIDEHDEVTIAGIGGAKGRAMGDLSGVNYKVEKVNGVSLIEL 132          
BLAST of CX296504 vs. ExPASy Swiss-Prot
Match: RS12_SULSO (30S ribosomal protein S12P OS=Sulfolobus solfataricus GN=rps12p PE=3 SV=2)

HSP 1 Score: 74.7146 bits (182), Expect = 1.588e-13
Identity = 34/62 (54.84%), Postives = 50/62 (80.65%), Query Frame = 2
Query:    5 LIKNGKKIAAFVPNDGCLNYIEENDEVLIAGF-GRKGHAVGDIPGVRFKVVKVSGVSLLALF 187
            L++NG+ + AFVP DG +N+I+E+DEV+I G  G  G ++GD+PGVR+KV+ V+GVSL AL+
Sbjct:   77 LVRNGRVVTAFVPGDGGVNFIDEHDEVIITGIGGTLGRSMGDLPGVRYKVIMVNGVSLDALY 138          
BLAST of CX296504 vs. ExPASy Swiss-Prot
Match: RS12_THEVO (30S ribosomal protein S12P OS=Thermoplasma volcanium GN=rps12p PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 2.709e-13
Identity = 36/61 (59.02%), Postives = 46/61 (75.41%), Query Frame = 2
Query:    5 LIKNGKKIAAFVPNDGCLNYIEENDEVLIAGF-GRKGHAVGDIPGVRFKVVKVSGVSLLAL 184
            LIKNG++I AF   DG +NYI+E+DEV + G  GR G + GDIPGVR+KVV V+G+SL  L
Sbjct:   72 LIKNGRQITAFAVGDGAINYIDEHDEVTVEGIGGRMGRSKGDIPGVRYKVVAVNGISLKEL 132          
The following BLAST results are available for this feature:
BLAST of CX296504 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 71
Match NameE-valueIdentityDescription
RS12_THECE7.130e-1460.6630S ribosomal protein S12P OS=Thermococcus celer G... [more]
RS12_PYRKO7.130e-1460.6630S ribosomal protein S12P OS=Pyrococcus kodakarae... [more]
RS12_PYRHO7.130e-1460.6630S ribosomal protein S12P OS=Pyrococcus horikoshi... [more]
RS12_IGNH49.312e-1462.3030S ribosomal protein S12P OS=Ignicoccus hospitali... [more]
RS12_NATPD1.216e-1359.0230S ribosomal protein S12P OS=Natronomonas pharaon... [more]
RS12_HALWD1.216e-1359.0230S ribosomal protein S12P OS=Haloquadratum walsby... [more]
RS12_HALSA1.216e-1359.0230S ribosomal protein S12P OS=Halobacterium salina... [more]
RS12_HALMA1.216e-1359.0230S ribosomal protein S12P OS=Haloarcula marismort... [more]
RS12_SULSO1.588e-1354.8430S ribosomal protein S12P OS=Sulfolobus solfatari... [more]
RS12_THEVO2.709e-1359.0230S ribosomal protein S12P OS=Thermoplasma volcani... [more]

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Properties
Property NameValue
Genbank descriptionC05141H12SK FerrChloL1 Citrus clementina cDNA clone C05141H12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX296504 ID=CX296504; Name=CX296504; organism=Citrus clementina; type=EST; length=288bp
TTCACTTATCAAAAACGGAAAGAAGATTGCCGCTTTTGTTCCAAATGATG
GTTGCTTGAACTATATTGAAGAAAATGATGAGGTGTTGATTGCTGGATTT
GGACGTAAGGGACATGCGGTCGGTGATATTCCCGGTGTCAGGTTCAAGGT
TGTGAAGGTCTCTGGTGTCTCTCTCTTGGCTCTCTTCAAAGAGAAGAAGG
AGAAGCCCAGGTCTTAAGAGAAGAGACCTGTCTTAACCTGCAAACTCTTT
GATAGTTCTTTTAAAGAATTCGGATTGTCACTTTTTGT
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