CX296504
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CX296504 vs. ExPASy Swiss-Prot
Match: RS12_THECE (30S ribosomal protein S12P OS=Thermococcus celer GN=rps12p PE=3 SV=1) HSP 1 Score: 75.8702 bits (185), Expect = 7.130e-14 Identity = 37/61 (60.66%), Postives = 48/61 (78.69%), Query Frame = 2 Query: 5 LIKNGKKIAAFVPNDGCLNYIEENDEVLIAGF-GRKGHAVGDIPGVRFKVVKVSGVSLLAL 184 LIKNGK + AF P DG +N+I+E+DEV+I G G KG ++GDIPG+R+KVVKV+ VSL L Sbjct: 77 LIKNGKVVTAFTPGDGAINHIDEHDEVIIEGIGGPKGGSMGDIPGIRYKVVKVNRVSLKEL 137
BLAST of CX296504 vs. ExPASy Swiss-Prot
Match: RS12_PYRKO (30S ribosomal protein S12P OS=Pyrococcus kodakaraensis GN=rps12p PE=3 SV=1) HSP 1 Score: 75.8702 bits (185), Expect = 7.130e-14 Identity = 37/61 (60.66%), Postives = 48/61 (78.69%), Query Frame = 2 Query: 5 LIKNGKKIAAFVPNDGCLNYIEENDEVLIAGF-GRKGHAVGDIPGVRFKVVKVSGVSLLAL 184 LIKNGK + AF P DG +N+I+E+DEV+I G G KG ++GDIPG+R+KVVKV+ VSL L Sbjct: 77 LIKNGKVVTAFTPGDGAINHIDEHDEVIIEGIGGPKGGSMGDIPGIRYKVVKVNRVSLKEL 137
BLAST of CX296504 vs. ExPASy Swiss-Prot
Match: RS12_PYRHO (30S ribosomal protein S12P OS=Pyrococcus horikoshii GN=rps12p PE=3 SV=2) HSP 1 Score: 75.8702 bits (185), Expect = 7.130e-14 Identity = 37/61 (60.66%), Postives = 48/61 (78.69%), Query Frame = 2 Query: 5 LIKNGKKIAAFVPNDGCLNYIEENDEVLIAGF-GRKGHAVGDIPGVRFKVVKVSGVSLLAL 184 LIKNGK + AF P DG +N+I+E+DEV+I G G KG ++GDIPG+R+KVVKV+ VSL L Sbjct: 77 LIKNGKVVTAFCPGDGAINFIDEHDEVIIEGIGGPKGGSMGDIPGIRYKVVKVNRVSLKEL 137
BLAST of CX296504 vs. ExPASy Swiss-Prot
Match: RS12_IGNH4 (30S ribosomal protein S12P OS=Ignicoccus hospitalis (strain KIN4/I / DSM 18386 / JCM 14125) GN=rps12p PE=3 SV=1) HSP 1 Score: 75.485 bits (184), Expect = 9.312e-14 Identity = 38/61 (62.30%), Postives = 48/61 (78.69%), Query Frame = 2 Query: 5 LIKNGKKIAAFVPNDGCLNYIEENDEVLIAGF-GRKGHAVGDIPGVRFKVVKVSGVSLLAL 184 L+KNGK + AFVP DG LN I E+DEV+I G G +G ++GDIPGVR+KVV V+GVSL A+ Sbjct: 77 LVKNGKVVTAFVPGDGGLNVISEHDEVVIVGIGGPRGRSMGDIPGVRYKVVLVNGVSLDAI 137
BLAST of CX296504 vs. ExPASy Swiss-Prot
Match: RS12_NATPD (30S ribosomal protein S12P OS=Natronomonas pharaonis (strain DSM 2160 / ATCC 35678) GN=rps12p PE=3 SV=1) HSP 1 Score: 75.0998 bits (183), Expect = 1.216e-13 Identity = 36/61 (59.02%), Postives = 48/61 (78.69%), Query Frame = 2 Query: 5 LIKNGKKIAAFVPNDGCLNYIEENDEVLIAGF-GRKGHAVGDIPGVRFKVVKVSGVSLLAL 184 LIKNGK++ AF P DG +++I+E+DEV IAG G KG A+GD+ GV +KV KV+GVSL+ L Sbjct: 72 LIKNGKQVTAFCPGDGAISFIDEHDEVTIAGIGGAKGRAMGDLSGVNYKVEKVNGVSLIEL 132
BLAST of CX296504 vs. ExPASy Swiss-Prot
Match: RS12_HALWD (30S ribosomal protein S12P OS=Haloquadratum walsbyi (strain DSM 16790) GN=rps12p PE=3 SV=1) HSP 1 Score: 75.0998 bits (183), Expect = 1.216e-13 Identity = 36/61 (59.02%), Postives = 48/61 (78.69%), Query Frame = 2 Query: 5 LIKNGKKIAAFVPNDGCLNYIEENDEVLIAGF-GRKGHAVGDIPGVRFKVVKVSGVSLLAL 184 LIKNGK++ AF P DG +++I+E+DEV IAG G KG A+GD+ GV +KV KV+GVSL+ L Sbjct: 72 LIKNGKQVTAFCPGDGAISFIDEHDEVTIAGIGGAKGRAMGDLSGVNYKVEKVNGVSLIEL 132
BLAST of CX296504 vs. ExPASy Swiss-Prot
Match: RS12_HALSA (30S ribosomal protein S12P OS=Halobacterium salinarium GN=rps12p PE=3 SV=1) HSP 1 Score: 75.0998 bits (183), Expect = 1.216e-13 Identity = 36/61 (59.02%), Postives = 48/61 (78.69%), Query Frame = 2 Query: 5 LIKNGKKIAAFVPNDGCLNYIEENDEVLIAGF-GRKGHAVGDIPGVRFKVVKVSGVSLLAL 184 LIKNGK++ AF P DG +++I+E+DEV IAG G KG A+GD+ GV +KV KV+GVSL+ L Sbjct: 72 LIKNGKQVTAFCPGDGAISFIDEHDEVTIAGIGGAKGRAMGDLSGVNYKVEKVNGVSLIEL 132
BLAST of CX296504 vs. ExPASy Swiss-Prot
Match: RS12_HALMA (30S ribosomal protein S12P OS=Haloarcula marismortui GN=rps12p PE=3 SV=1) HSP 1 Score: 75.0998 bits (183), Expect = 1.216e-13 Identity = 36/61 (59.02%), Postives = 48/61 (78.69%), Query Frame = 2 Query: 5 LIKNGKKIAAFVPNDGCLNYIEENDEVLIAGF-GRKGHAVGDIPGVRFKVVKVSGVSLLAL 184 LIKNGK++ AF P DG +++I+E+DEV IAG G KG A+GD+ GV +KV KV+GVSL+ L Sbjct: 72 LIKNGKQVTAFCPGDGAISFIDEHDEVTIAGIGGAKGRAMGDLSGVNYKVEKVNGVSLIEL 132
BLAST of CX296504 vs. ExPASy Swiss-Prot
Match: RS12_SULSO (30S ribosomal protein S12P OS=Sulfolobus solfataricus GN=rps12p PE=3 SV=2) HSP 1 Score: 74.7146 bits (182), Expect = 1.588e-13 Identity = 34/62 (54.84%), Postives = 50/62 (80.65%), Query Frame = 2 Query: 5 LIKNGKKIAAFVPNDGCLNYIEENDEVLIAGF-GRKGHAVGDIPGVRFKVVKVSGVSLLALF 187 L++NG+ + AFVP DG +N+I+E+DEV+I G G G ++GD+PGVR+KV+ V+GVSL AL+ Sbjct: 77 LVRNGRVVTAFVPGDGGVNFIDEHDEVIITGIGGTLGRSMGDLPGVRYKVIMVNGVSLDALY 138
BLAST of CX296504 vs. ExPASy Swiss-Prot
Match: RS12_THEVO (30S ribosomal protein S12P OS=Thermoplasma volcanium GN=rps12p PE=3 SV=1) HSP 1 Score: 73.9442 bits (180), Expect = 2.709e-13 Identity = 36/61 (59.02%), Postives = 46/61 (75.41%), Query Frame = 2 Query: 5 LIKNGKKIAAFVPNDGCLNYIEENDEVLIAGF-GRKGHAVGDIPGVRFKVVKVSGVSLLAL 184 LIKNG++I AF DG +NYI+E+DEV + G GR G + GDIPGVR+KVV V+G+SL L Sbjct: 72 LIKNGRQITAFAVGDGAINYIDEHDEVTVEGIGGRMGRSKGDIPGVRYKVVAVNGISLKEL 132 The following BLAST results are available for this feature:
BLAST of CX296504 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 71
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Sequences
The
following sequences are available for this feature:
EST sequence >CX296504 ID=CX296504; Name=CX296504; organism=Citrus clementina; type=EST; length=288bpback to top |