CX296505

Overview
NameCX296505
Unique NameCX296505
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length636
Libraries
Library NameType
FerrChloL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig108 contig Ccv1_Contig108:591..1226. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX296505 vs. ExPASy Swiss-Prot
Match: CB4A_SOLLC (Chlorophyll a-b binding protein CP24 10A, chloroplastic OS=Solanum lycopersicum GN=CAP10A PE=3 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 5.532e-16
Identity = 70/204 (34.31%), Postives = 86/204 (42.16%), Query Frame = 2
Query:   26 PSYLTGEVPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAVEGYRIA------------GGPLGEVTDPL--------YPGGS-FDPLGLA---------DDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPL 547
            P +L G +PGDYG+D  GL  DP      RE E+IH RWAM   LG          G  +    WF+AGA            +P  I   S   +   Q++LMG VE  R                P  +  +          YPGG  FDPL LA          D E    LKV EIK+ RLAM +M  F+ +A   GK PL
Sbjct:   68 PEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVLGIFV-------GQAWSGIPWFEAGA------------DPGAIAPFSFGTLLGTQLILMGWVESKRWVDFFDPDSQSVEWATPWSKTAENFANFTGEQGYPGGKFFDPLALAGTLNNGVYVPDTEKLERLKVAEIKHARLAMLAMLIFYFEA-GQGKTPL 251          
BLAST of CX296505 vs. ExPASy Swiss-Prot
Match: CB4B_SOLLC (Chlorophyll a-b binding protein CP24 10B, chloroplastic OS=Solanum lycopersicum GN=CAP10B PE=3 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 4.683e-15
Identity = 68/204 (33.33%), Postives = 87/204 (42.65%), Query Frame = 2
Query:   26 PSYLTGEVPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAVEGYRIA------------GGPLGEVTDPL--------YPGGS-FDPLGLA---------DDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPL 547
            P +L G +PGD+G+D  GL  DP      RE E+IH RWAM   LG          G  +    WF+AGA            +P  I   S  ++   Q++LMG VE  R                P  +  +          YPGG  FDPL LA          D E    LK+ EIK+ RLAM +M  F+ +A   GK PL
Sbjct:   68 PEWLDGSLPGDFGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVLGIFV-------GQAWSGIPWFEAGA------------DPGAIAPFSFGSLLGTQLLLMGWVESKRWVDFFDNDSQSIDWATPWSKTAENFANFTGEQGYPGGKFFDPLALAGTLNNGVYVPDTEKLERLKLAEIKHSRLAMLAMLIFYFEA-GQGKTPL 251          
BLAST of CX296505 vs. ExPASy Swiss-Prot
Match: CB4_SPIOL (Chlorophyll a-b binding protein CP24, chloroplastic OS=Spinacia oleracea PE=2 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 6.116e-15
Identity = 68/204 (33.33%), Postives = 88/204 (43.14%), Query Frame = 2
Query:   26 PSYLTGEVPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAVEGYR--------------------IAGGPLGEVTDPLYPGGSF-DPLGLAD---------DPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPL 547
            P +L G +PGD+G+D  GL  DP      RE E+IH RWAML  LG    +  A  G+      WF+AGA            +P  +   S   +   Q++LMG VE  R                     A        +  YPGG F DPL LA          D +    LK+ EIK+ RLAM +M  F+ +A   GK PL
Sbjct:   73 PEWLDGSLPGDFGFDPLGLGKDPAFLKWYREAELIHGRWAMLAVLGIFVGQ--AWTGIP-----WFEAGA------------DPGAVAPFSFGTLLGTQLLLMGWVESKRWVDFFDPDSQSVEWATPWSRTAENFSNSTGEQGYPGGKFFDPLSLAGTISNGVYNPDTDKLERLKLAEIKHARLAMLAMLIFYFEA-GQGKTPL 256          
BLAST of CX296505 vs. ExPASy Swiss-Prot
Match: LH15_EUGGR (Light-harvesting complex I LH35 proteins (Fragment) OS=Euglena gracilis PE=2 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 1.967e-13
Identity = 67/173 (38.73%), Postives = 81/173 (46.82%), Query Frame = 2
Query:   92 PETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAVEGYRIAGGPLG----EVTDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWA 598
            P  + + R  EV + R AML  +GCV+PELL  NGV F   VW K     F                    A+ + QVV    +E +R  GG  G    E  D  YPG  FDP  L  +       K  EIKNGRLAM  MFG  VQ  VT +GP+ NL +HL  P+  N  A
Sbjct:    1 PTVYERMRVAEVFNGRLAMLAIVGCVYPELLG-NGVWF--EVWNKVDFYRF--------------------ALISLQVV--APLEYWRGNGG-FGWDGEEKYDRSYPG--FDPCNLTTE-----YTKAAEIKNGRLAMIGMFGLEVQNHVTAQGPVANLIEHLRHPLAANIGA 140          
The following BLAST results are available for this feature:
BLAST of CX296505 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 84
Match NameE-valueIdentityDescription
CB4A_SOLLC5.532e-1634.31Chlorophyll a-b binding protein CP24 10A, chloropl... [more]
CB4B_SOLLC4.683e-1533.33Chlorophyll a-b binding protein CP24 10B, chloropl... [more]
CB4_SPIOL6.116e-1533.33Chlorophyll a-b binding protein CP24, chloroplasti... [more]
LH15_EUGGR1.967e-1338.73Light-harvesting complex I LH35 proteins (Fragment... [more]

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Properties
Property NameValue
Genbank descriptionC05142A01SK FerrChloL1 Citrus clementina cDNA clone C05142A01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX296505 ID=CX296505; Name=CX296505; organism=Citrus clementina; type=EST; length=636bp
CTTGGGCCCATTCTCTGGCGAGCCCCCAAGCTACTTGACCGGTGAGGTCC
CTGGCGACTACGGTTGGGACACAGCCGGGCTTTCAGCTGACCCAGAAACC
TTTGCCAAGAACCGTGAACTCGAAGTCATCCACTGCAGATGGGCCATGTT
GGGAGCTCTTGGATGCGTCTTCCCGGAGCTCTTGGCCCGCAACGGAGTCA
AGTTCGGTGAGGCCGTGTGGTTCAAGGCGGGAGCTCAGATCTTCAGCGAG
GGCGGGCTTGACTACTTGGGAAACCCAAGCTTGATCCACGCCCAGAGCAT
CTTGGCCATCTGGGCTTGCCAGGTGGTCTTGATGGGAGCTGTTGAGGGTT
ACAGAATTGCTGGAGGGCCGCTCGGTGAAGTGACCGACCCATTGTACCCA
GGTGGCAGCTTTGATCCATTGGGTTTGGCTGATGACCCGGAGGCTTTTGC
TGAGCTCAAGGTTAAGGAAATCAAGAATGGAAGGTTGGCTATGTTCTCCA
TGTTTGGTTTCTTTGTTCAGGCCATTGTCACCGGCAAGGGACCGTTAGAG
AACTTGGCCGACCACTTGGCTGACCCTGTCAATAACAATGCCTGGGCCTA
CGCCACCAACTTTGTCCCCGGAAAGTGAGCTTCGGT
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