CX296506

Overview
NameCX296506
Unique NameCX296506
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length709
Libraries
Library NameType
FerrChloL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX296506 vs. ExPASy Swiss-Prot
Match: RBS3_ACEAT (Ribulose bisphosphate carboxylase small chain 3, chloroplastic OS=Acetabularia acetabulum GN=RBCS-3 PE=2 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 2.595e-23
Identity = 56/146 (38.36%), Postives = 80/146 (54.79%), Query Frame = 1
Query:  217 MKVWPPTGLKKFETLSYLPPLSDEALLKEISYLIRSGWIPCLEFEL-EKGWVYREHHRSPG-----YYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIYRI*QQASSAVHQFHCCQATRRLGSQLNLCNHPCNIVDY 636
            M VW P   K FET S+LPPL+DE + K++ Y++ + W PCLEF   ++ +   E+    G     Y D RYWTMWKLPM+GCTDA+QVL E+    K +P +++R+               C  A R++     L + P +  DY
Sbjct:   43 MMVWQPFNNKMFETFSFLPPLTDEQISKQVDYILINSWTPCLEFAASDQAYAGNENCIRMGPVASTYQDNRYWTMWKLPMFGCTDASQVLSEIQACTKAFPDAYIRLV--------------CFDANRQVQISGFLVHRPPSATDY 174          
BLAST of CX296506 vs. ExPASy Swiss-Prot
Match: RBS4_ACEAT (Ribulose bisphosphate carboxylase small chain 4, chloroplastic OS=Acetabularia acetabulum GN=RBCS-4 PE=2 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 4.426e-23
Identity = 59/171 (34.50%), Postives = 86/171 (50.29%), Query Frame = 1
Query:  142 SAFPATKKTNNDITSIASNGGRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEISYLIRSGWIPCLEFEL-EKGWVYREHHRSPG-----YYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIYRI*QQASSAVHQFHCCQATRRLGSQLNLCNHPCNIVDY 636
            +A P    +     S  +N  R   M VW P   K FET S+LPPL+DE + K++ Y++ + W PCLEF   ++ +   E+    G     Y D RYWTMWKLPM+GCTD +QVL E+      +P +++R+               C  A R++     L + P +  DY
Sbjct:   20 AATPKVVTSKRSFASTVANKNRE--MMVWQPFNNKMFETFSFLPPLTDEQISKQVDYILANSWTPCLEFAASDQAYAGNENCIRMGPVASTYQDNRYWTMWKLPMFGCTDGSQVLSEIQACTNAFPDAYIRLV--------------CFDANRQVQISGFLVHRPPSATDY 174          
BLAST of CX296506 vs. ExPASy Swiss-Prot
Match: RBS2_ACEAT (Ribulose bisphosphate carboxylase small chain 2, chloroplastic (Fragment) OS=Acetabularia acetabulum GN=RBCS-2 PE=2 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 4.426e-23
Identity = 55/146 (37.67%), Postives = 79/146 (54.11%), Query Frame = 1
Query:  217 MKVWPPTGLKKFETLSYLPPLSDEALLKEISYLIRSGWIPCLEFEL-EKGWVYREHHRSPG-----YYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIYRI*QQASSAVHQFHCCQATRRLGSQLNLCNHPCNIVDY 636
            M VW P   K FET S+LPPL+DE + K++ Y++ + W PCLEF   ++ +   E+    G     Y D RYWTMWKLPM+GCTD +QVL E+    K +P +++R+               C  A R++     L + P +  DY
Sbjct:   34 MMVWQPFNNKMFETFSFLPPLTDEQISKQVDYILTNSWTPCLEFAASDQAYAGNENCIRMGPVASTYQDNRYWTMWKLPMFGCTDGSQVLSEIQACTKAFPDAYIRLV--------------CFDANRQVQISGFLVHRPPSATDY 165          
BLAST of CX296506 vs. ExPASy Swiss-Prot
Match: RBS1_ACEAT (Ribulose bisphosphate carboxylase small chain 1, chloroplastic OS=Acetabularia acetabulum GN=RBCS-1 PE=2 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 4.426e-23
Identity = 55/146 (37.67%), Postives = 79/146 (54.11%), Query Frame = 1
Query:  217 MKVWPPTGLKKFETLSYLPPLSDEALLKEISYLIRSGWIPCLEFEL-EKGWVYREHHRSPG-----YYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIYRI*QQASSAVHQFHCCQATRRLGSQLNLCNHPCNIVDY 636
            M VW P   K FET S+LPPL+DE + K++ Y++ + W PCLEF   ++ +   E+    G     Y D RYWTMWKLPM+GCTD +QVL E+    K +P +++R+               C  A R++     L + P +  DY
Sbjct:   43 MMVWQPFNNKMFETFSFLPPLTDEQISKQVDYILTNSWTPCLEFAASDQAYAGNENCIRMGPVASTYQDNRYWTMWKLPMFGCTDGSQVLSEIQACTKAFPDAYIRLV--------------CFDANRQVQISGFLVHRPPSATDY 174          
BLAST of CX296506 vs. ExPASy Swiss-Prot
Match: RBS5_ACEAT (Ribulose bisphosphate carboxylase small chain 5, chloroplastic OS=Acetabularia acetabulum GN=RBCS-5 PE=2 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 1.682e-22
Identity = 54/146 (36.99%), Postives = 78/146 (53.42%), Query Frame = 1
Query:  217 MKVWPPTGLKKFETLSYLPPLSDEALLKEISYLIRSGWIPCLEFEL-EKGWVYREHHRSPG-----YYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIYRI*QQASSAVHQFHCCQATRRLGSQLNLCNHPCNIVDY 636
            M VW P   K FET S+LPPL+DE + K++ Y++ + W PCLEF   ++ +   E+    G     Y D RYWTMWKLPM+GCTD +QVL E+      +P +++R+               C  A R++     L + P +  DY
Sbjct:   44 MMVWQPFNNKMFETFSFLPPLTDEQISKQVDYILANSWTPCLEFAASDQAYAGNENCIRMGPVASTYQDNRYWTMWKLPMFGCTDGSQVLSEIQACTNAFPDAYIRLV--------------CFDANRQVQISGFLVHRPPSATDY 175          
BLAST of CX296506 vs. ExPASy Swiss-Prot
Match: RBS1_ACECL (Ribulose bisphosphate carboxylase small chain 1 (Fragment) OS=Acetabularia cliftonii GN=RBCS-1 PE=2 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 1.473e-18
Identity = 47/131 (35.88%), Postives = 71/131 (54.20%), Query Frame = 1
Query:  262 SYLPPLSDEALLKEISYLIRSGWIPCLEFEL-EKGWVYREHHRSPG-----YYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIYRI*QQASSAVHQFHCCQATRRLGSQLNLCNHPCNIVDY 636
            SYLPPL+DE + K++ Y++ + W PCLEF   ++ +   ++    G     Y D RYWTMWKLPM+GCTD +QVL E+    K +P +++R+               C  A R++     L + P +  DY
Sbjct:    2 SYLPPLTDEQISKQVDYILANSWTPCLEFAASDQAYAGNDNCIRMGPVASTYQDNRYWTMWKLPMFGCTDGSQVLSEIQACTKAFPDAYIRLV--------------CFDANRQVQISGFLVHRPPSATDY 118          
BLAST of CX296506 vs. ExPASy Swiss-Prot
Match: RBS_PROHO (Ribulose bisphosphate carboxylase small chain OS=Prochlorothrix hollandica GN=cbbS PE=3 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 3.179e-18
Identity = 37/92 (40.22%), Postives = 57/92 (61.96%), Query Frame = 1
Query:  244 KKFETLSYLPPLSDEALLKEISYLIRSGWIPCLEFELEKGWVYREHHRSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRI 519
            +++ETLSYLPPLSD+ + ++I Y++R G+IP +EF  +                  YWTMWKLP++  T   +VL EV E + EYP+ ++R+
Sbjct:    8 RRYETLSYLPPLSDQQIARQIEYMVREGYIPAVEFNEDSD------------ATTCYWTMWKLPLFHATSTQEVLGEVRECRTEYPNCYIRV 87          

HSP 2 Score: 28.1054 bits (61), Expect = 3.179e-18
Identity = 11/19 (57.89%), Postives = 14/19 (73.68%), Query Frame = 2
Query:  521 IGFDNKRQVQCISFIAAKP 577
            +GFDN +Q Q +SFI  KP
Sbjct:   88 VGFDNIKQCQSVSFIVHKP 106          
BLAST of CX296506 vs. ExPASy Swiss-Prot
Match: RBS_SYNP2 (Ribulose bisphosphate carboxylase small chain OS=Synechococcus sp. (strain ATCC 27264 / PCC 7002 / PR-6) GN=cbbS PE=3 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 4.389e-17
Identity = 37/92 (40.22%), Postives = 57/92 (61.96%), Query Frame = 1
Query:  244 KKFETLSYLPPLSDEALLKEISYLIRSGWIPCLEFELEKGWVYREHHRSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRI 519
            K++ETLSYLPPLSD+ + +++ Y++  G+IP +EF  EK      HH          WT+WKLP++  + A +VL EV E + EY   ++R+
Sbjct:    8 KRYETLSYLPPLSDQQIARQVQYMMDQGYIPGIEF--EKDPTPELHH----------WTLWKLPLFNASSAQEVLNEVRECRSEYSDCYIRV 87          

HSP 2 Score: 28.1054 bits (61), Expect = 4.389e-17
Identity = 11/19 (57.89%), Postives = 14/19 (73.68%), Query Frame = 2
Query:  521 IGFDNKRQVQCISFIAAKP 577
            +GFDN +Q Q +SFI  KP
Sbjct:   88 VGFDNIKQCQTVSFIVYKP 106          
BLAST of CX296506 vs. ExPASy Swiss-Prot
Match: RBS_SYNY3 (Ribulose bisphosphate carboxylase small chain OS=Synechocystis sp. (strain PCC 6803) GN=cbbS PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 9.645e-17
Identity = 37/92 (40.22%), Postives = 58/92 (63.04%), Query Frame = 1
Query:  244 KKFETLSYLPPLSDEALLKEISYLIRSGWIPCLEFELEKGWVYREHHRSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRI 519
            +++ETLSYLPPL+D+ + K++ +L+  G+IP +EFE +      E H         +WTMWKLP +G   A +VL EV E + E P+ ++R+
Sbjct:    8 RRYETLSYLPPLTDQQIAKQVEFLLDQGFIPGVEFEEDP---QPETH---------FWTMWKLPFFGGATANEVLAEVRECRSENPNCYIRV 87          

HSP 2 Score: 28.4906 bits (62), Expect = 9.645e-17
Identity = 12/19 (63.16%), Postives = 14/19 (73.68%), Query Frame = 2
Query:  521 IGFDNKRQVQCISFIAAKP 577
            IGFDN +Q Q +SFI  KP
Sbjct:   88 IGFDNIKQCQTVSFIVHKP 106          
BLAST of CX296506 vs. ExPASy Swiss-Prot
Match: RBS_SYNP6 (Ribulose bisphosphate carboxylase small chain OS=Synechococcus sp. (strain ATCC 27144 / PCC 6301 / SAUG 1402/1) GN=cbbS PE=1 SV=3)

HSP 1 Score: 79.7221 bits (195), Expect = 1.254e-16
Identity = 38/92 (41.30%), Postives = 53/92 (57.61%), Query Frame = 1
Query:  244 KKFETLSYLPPLSDEALLKEISYLIRSGWIPCLEFELEKGWVYREHHRSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRI 519
            ++FET SYLPPLSD  +  +I Y+I  G+ P +EF           H +P  +   YWTMWKLP++ C    QVL EV E + EY   ++R+
Sbjct:   10 RRFETFSYLPPLSDRQIAAQIEYMIEQGFHPLIEFN---------EHSNPEEF---YWTMWKLPLFDCKSPQQVLDEVRECRSEYGDCYIRV 89          

HSP 2 Score: 25.7942 bits (55), Expect = 1.254e-16
Identity = 10/18 (55.56%), Postives = 13/18 (72.22%), Query Frame = 2
Query:  524 GFDNKRQVQCISFIAAKP 577
            GFDN +Q Q +SFI  +P
Sbjct:   91 GFDNIKQCQTVSFIVHRP 108          
The following BLAST results are available for this feature:
BLAST of CX296506 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 120
Match NameE-valueIdentityDescription
RBS3_ACEAT2.595e-2338.36Ribulose bisphosphate carboxylase small chain 3, c... [more]
RBS4_ACEAT4.426e-2334.50Ribulose bisphosphate carboxylase small chain 4, c... [more]
RBS2_ACEAT4.426e-2337.67Ribulose bisphosphate carboxylase small chain 2, c... [more]
RBS1_ACEAT4.426e-2337.67Ribulose bisphosphate carboxylase small chain 1, c... [more]
RBS5_ACEAT1.682e-2236.99Ribulose bisphosphate carboxylase small chain 5, c... [more]
RBS1_ACECL1.473e-1835.88Ribulose bisphosphate carboxylase small chain 1 (F... [more]
RBS_PROHO3.179e-1840.22Ribulose bisphosphate carboxylase small chain OS=P... [more]
RBS_SYNP24.389e-1740.22Ribulose bisphosphate carboxylase small chain OS=S... [more]
RBS_SYNY39.645e-1740.22Ribulose bisphosphate carboxylase small chain OS=S... [more]
RBS_SYNP61.254e-1641.30Ribulose bisphosphate carboxylase small chain OS=S... [more]

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Properties
Property NameValue
Genbank descriptionC05142A05SK FerrChloL1 Citrus clementina cDNA clone C05142A05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX296506 ID=CX296506; Name=CX296506; organism=Citrus clementina; type=EST; length=709bp
GAGGCCTCGTGCCGAATTCGGCACGAGGAGCAAGTACCAATGGCTTCCTC
AATGATCTCATCGGCCACCGTTGCCACCGCGAACCGCGCCAGCCTTGCTC
AGGCCAGCATGGTCGCCCCCTTCACCGGCCTCAAGTCTTCTTCTGCTTTC
CCAGCAACCAAGAAGACCAACAATGACATTACTTCCATTGCAAGCAACGG
CGGAAGAGTCCAATGCATGAAGGTGTGGCCACCAACTGGCTTGAAGAAGT
TCGAGACTCTCTCATACCTCCCGCCACTGTCCGATGAAGCTTTGCTCAAG
GAAATCAGTTACCTTATCCGCTCCGGCTGGATTCCCTGCTTGGAATTCGA
GTTGGAGAAAGGATGGGTGTACCGTGAGCACCACAGGTCACCAGGATACT
ACGATGGACGCTACTGGACAATGTGGAAGCTGCCCATGTATGGGTGCACA
GATGCAACCCAGGTTTTGAAGGAGGTTGGGGAGGTCCAGAAGGAATACCC
ACATTCATTCGTCCGAATTTATCGGATTTGACAACAAGCGTCAAGTGCAG
TGCATCAGTTTCATTGCTGCCAAGCCACCAGGCGTCTAGGTTCCCAATTA
AATTTGTGTAACCACCCATGCAATATTGTTGATTATTATTATGTGTAACC
CCCATAATGATCATTCGATCAATGGGGGTTCGGTTTGCGTTTAATTTGTA
CTTAGGCTG
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