CX296506
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CX296506 vs. ExPASy Swiss-Prot
Match: RBS3_ACEAT (Ribulose bisphosphate carboxylase small chain 3, chloroplastic OS=Acetabularia acetabulum GN=RBCS-3 PE=2 SV=1) HSP 1 Score: 108.997 bits (271), Expect = 2.595e-23 Identity = 56/146 (38.36%), Postives = 80/146 (54.79%), Query Frame = 1 Query: 217 MKVWPPTGLKKFETLSYLPPLSDEALLKEISYLIRSGWIPCLEFEL-EKGWVYREHHRSPG-----YYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIYRI*QQASSAVHQFHCCQATRRLGSQLNLCNHPCNIVDY 636 M VW P K FET S+LPPL+DE + K++ Y++ + W PCLEF ++ + E+ G Y D RYWTMWKLPM+GCTDA+QVL E+ K +P +++R+ C A R++ L + P + DY Sbjct: 43 MMVWQPFNNKMFETFSFLPPLTDEQISKQVDYILINSWTPCLEFAASDQAYAGNENCIRMGPVASTYQDNRYWTMWKLPMFGCTDASQVLSEIQACTKAFPDAYIRLV--------------CFDANRQVQISGFLVHRPPSATDY 174
BLAST of CX296506 vs. ExPASy Swiss-Prot
Match: RBS4_ACEAT (Ribulose bisphosphate carboxylase small chain 4, chloroplastic OS=Acetabularia acetabulum GN=RBCS-4 PE=2 SV=1) HSP 1 Score: 108.227 bits (269), Expect = 4.426e-23 Identity = 59/171 (34.50%), Postives = 86/171 (50.29%), Query Frame = 1 Query: 142 SAFPATKKTNNDITSIASNGGRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEISYLIRSGWIPCLEFEL-EKGWVYREHHRSPG-----YYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIYRI*QQASSAVHQFHCCQATRRLGSQLNLCNHPCNIVDY 636 +A P + S +N R M VW P K FET S+LPPL+DE + K++ Y++ + W PCLEF ++ + E+ G Y D RYWTMWKLPM+GCTD +QVL E+ +P +++R+ C A R++ L + P + DY Sbjct: 20 AATPKVVTSKRSFASTVANKNRE--MMVWQPFNNKMFETFSFLPPLTDEQISKQVDYILANSWTPCLEFAASDQAYAGNENCIRMGPVASTYQDNRYWTMWKLPMFGCTDGSQVLSEIQACTNAFPDAYIRLV--------------CFDANRQVQISGFLVHRPPSATDY 174
BLAST of CX296506 vs. ExPASy Swiss-Prot
Match: RBS2_ACEAT (Ribulose bisphosphate carboxylase small chain 2, chloroplastic (Fragment) OS=Acetabularia acetabulum GN=RBCS-2 PE=2 SV=1) HSP 1 Score: 108.227 bits (269), Expect = 4.426e-23 Identity = 55/146 (37.67%), Postives = 79/146 (54.11%), Query Frame = 1 Query: 217 MKVWPPTGLKKFETLSYLPPLSDEALLKEISYLIRSGWIPCLEFEL-EKGWVYREHHRSPG-----YYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIYRI*QQASSAVHQFHCCQATRRLGSQLNLCNHPCNIVDY 636 M VW P K FET S+LPPL+DE + K++ Y++ + W PCLEF ++ + E+ G Y D RYWTMWKLPM+GCTD +QVL E+ K +P +++R+ C A R++ L + P + DY Sbjct: 34 MMVWQPFNNKMFETFSFLPPLTDEQISKQVDYILTNSWTPCLEFAASDQAYAGNENCIRMGPVASTYQDNRYWTMWKLPMFGCTDGSQVLSEIQACTKAFPDAYIRLV--------------CFDANRQVQISGFLVHRPPSATDY 165
BLAST of CX296506 vs. ExPASy Swiss-Prot
Match: RBS1_ACEAT (Ribulose bisphosphate carboxylase small chain 1, chloroplastic OS=Acetabularia acetabulum GN=RBCS-1 PE=2 SV=1) HSP 1 Score: 108.227 bits (269), Expect = 4.426e-23 Identity = 55/146 (37.67%), Postives = 79/146 (54.11%), Query Frame = 1 Query: 217 MKVWPPTGLKKFETLSYLPPLSDEALLKEISYLIRSGWIPCLEFEL-EKGWVYREHHRSPG-----YYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIYRI*QQASSAVHQFHCCQATRRLGSQLNLCNHPCNIVDY 636 M VW P K FET S+LPPL+DE + K++ Y++ + W PCLEF ++ + E+ G Y D RYWTMWKLPM+GCTD +QVL E+ K +P +++R+ C A R++ L + P + DY Sbjct: 43 MMVWQPFNNKMFETFSFLPPLTDEQISKQVDYILTNSWTPCLEFAASDQAYAGNENCIRMGPVASTYQDNRYWTMWKLPMFGCTDGSQVLSEIQACTKAFPDAYIRLV--------------CFDANRQVQISGFLVHRPPSATDY 174
BLAST of CX296506 vs. ExPASy Swiss-Prot
Match: RBS5_ACEAT (Ribulose bisphosphate carboxylase small chain 5, chloroplastic OS=Acetabularia acetabulum GN=RBCS-5 PE=2 SV=1) HSP 1 Score: 106.301 bits (264), Expect = 1.682e-22 Identity = 54/146 (36.99%), Postives = 78/146 (53.42%), Query Frame = 1 Query: 217 MKVWPPTGLKKFETLSYLPPLSDEALLKEISYLIRSGWIPCLEFEL-EKGWVYREHHRSPG-----YYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIYRI*QQASSAVHQFHCCQATRRLGSQLNLCNHPCNIVDY 636 M VW P K FET S+LPPL+DE + K++ Y++ + W PCLEF ++ + E+ G Y D RYWTMWKLPM+GCTD +QVL E+ +P +++R+ C A R++ L + P + DY Sbjct: 44 MMVWQPFNNKMFETFSFLPPLTDEQISKQVDYILANSWTPCLEFAASDQAYAGNENCIRMGPVASTYQDNRYWTMWKLPMFGCTDGSQVLSEIQACTNAFPDAYIRLV--------------CFDANRQVQISGFLVHRPPSATDY 175
BLAST of CX296506 vs. ExPASy Swiss-Prot
Match: RBS1_ACECL (Ribulose bisphosphate carboxylase small chain 1 (Fragment) OS=Acetabularia cliftonii GN=RBCS-1 PE=2 SV=1) HSP 1 Score: 93.2041 bits (230), Expect = 1.473e-18 Identity = 47/131 (35.88%), Postives = 71/131 (54.20%), Query Frame = 1 Query: 262 SYLPPLSDEALLKEISYLIRSGWIPCLEFEL-EKGWVYREHHRSPG-----YYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIYRI*QQASSAVHQFHCCQATRRLGSQLNLCNHPCNIVDY 636 SYLPPL+DE + K++ Y++ + W PCLEF ++ + ++ G Y D RYWTMWKLPM+GCTD +QVL E+ K +P +++R+ C A R++ L + P + DY Sbjct: 2 SYLPPLTDEQISKQVDYILANSWTPCLEFAASDQAYAGNDNCIRMGPVASTYQDNRYWTMWKLPMFGCTDGSQVLSEIQACTKAFPDAYIRLV--------------CFDANRQVQISGFLVHRPPSATDY 118
BLAST of CX296506 vs. ExPASy Swiss-Prot
Match: RBS_PROHO (Ribulose bisphosphate carboxylase small chain OS=Prochlorothrix hollandica GN=cbbS PE=3 SV=1) HSP 1 Score: 82.8037 bits (203), Expect = 3.179e-18 Identity = 37/92 (40.22%), Postives = 57/92 (61.96%), Query Frame = 1 Query: 244 KKFETLSYLPPLSDEALLKEISYLIRSGWIPCLEFELEKGWVYREHHRSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRI 519 +++ETLSYLPPLSD+ + ++I Y++R G+IP +EF + YWTMWKLP++ T +VL EV E + EYP+ ++R+ Sbjct: 8 RRYETLSYLPPLSDQQIARQIEYMVREGYIPAVEFNEDSD------------ATTCYWTMWKLPLFHATSTQEVLGEVRECRTEYPNCYIRV 87 HSP 2 Score: 28.1054 bits (61), Expect = 3.179e-18 Identity = 11/19 (57.89%), Postives = 14/19 (73.68%), Query Frame = 2 Query: 521 IGFDNKRQVQCISFIAAKP 577 +GFDN +Q Q +SFI KP Sbjct: 88 VGFDNIKQCQSVSFIVHKP 106
BLAST of CX296506 vs. ExPASy Swiss-Prot
Match: RBS_SYNP2 (Ribulose bisphosphate carboxylase small chain OS=Synechococcus sp. (strain ATCC 27264 / PCC 7002 / PR-6) GN=cbbS PE=3 SV=1) HSP 1 Score: 78.9518 bits (193), Expect = 4.389e-17 Identity = 37/92 (40.22%), Postives = 57/92 (61.96%), Query Frame = 1 Query: 244 KKFETLSYLPPLSDEALLKEISYLIRSGWIPCLEFELEKGWVYREHHRSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRI 519 K++ETLSYLPPLSD+ + +++ Y++ G+IP +EF EK HH WT+WKLP++ + A +VL EV E + EY ++R+ Sbjct: 8 KRYETLSYLPPLSDQQIARQVQYMMDQGYIPGIEF--EKDPTPELHH----------WTLWKLPLFNASSAQEVLNEVRECRSEYSDCYIRV 87 HSP 2 Score: 28.1054 bits (61), Expect = 4.389e-17 Identity = 11/19 (57.89%), Postives = 14/19 (73.68%), Query Frame = 2 Query: 521 IGFDNKRQVQCISFIAAKP 577 +GFDN +Q Q +SFI KP Sbjct: 88 VGFDNIKQCQTVSFIVYKP 106
BLAST of CX296506 vs. ExPASy Swiss-Prot
Match: RBS_SYNY3 (Ribulose bisphosphate carboxylase small chain OS=Synechocystis sp. (strain PCC 6803) GN=cbbS PE=3 SV=1) HSP 1 Score: 77.411 bits (189), Expect = 9.645e-17 Identity = 37/92 (40.22%), Postives = 58/92 (63.04%), Query Frame = 1 Query: 244 KKFETLSYLPPLSDEALLKEISYLIRSGWIPCLEFELEKGWVYREHHRSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRI 519 +++ETLSYLPPL+D+ + K++ +L+ G+IP +EFE + E H +WTMWKLP +G A +VL EV E + E P+ ++R+ Sbjct: 8 RRYETLSYLPPLTDQQIAKQVEFLLDQGFIPGVEFEEDP---QPETH---------FWTMWKLPFFGGATANEVLAEVRECRSENPNCYIRV 87 HSP 2 Score: 28.4906 bits (62), Expect = 9.645e-17 Identity = 12/19 (63.16%), Postives = 14/19 (73.68%), Query Frame = 2 Query: 521 IGFDNKRQVQCISFIAAKP 577 IGFDN +Q Q +SFI KP Sbjct: 88 IGFDNIKQCQTVSFIVHKP 106
BLAST of CX296506 vs. ExPASy Swiss-Prot
Match: RBS_SYNP6 (Ribulose bisphosphate carboxylase small chain OS=Synechococcus sp. (strain ATCC 27144 / PCC 6301 / SAUG 1402/1) GN=cbbS PE=1 SV=3) HSP 1 Score: 79.7221 bits (195), Expect = 1.254e-16 Identity = 38/92 (41.30%), Postives = 53/92 (57.61%), Query Frame = 1 Query: 244 KKFETLSYLPPLSDEALLKEISYLIRSGWIPCLEFELEKGWVYREHHRSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRI 519 ++FET SYLPPLSD + +I Y+I G+ P +EF H +P + YWTMWKLP++ C QVL EV E + EY ++R+ Sbjct: 10 RRFETFSYLPPLSDRQIAAQIEYMIEQGFHPLIEFN---------EHSNPEEF---YWTMWKLPLFDCKSPQQVLDEVRECRSEYGDCYIRV 89 HSP 2 Score: 25.7942 bits (55), Expect = 1.254e-16 Identity = 10/18 (55.56%), Postives = 13/18 (72.22%), Query Frame = 2 Query: 524 GFDNKRQVQCISFIAAKP 577 GFDN +Q Q +SFI +P Sbjct: 91 GFDNIKQCQTVSFIVHRP 108 The following BLAST results are available for this feature:
BLAST of CX296506 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 120
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Sequences
The
following sequences are available for this feature:
EST sequence >CX296506 ID=CX296506; Name=CX296506; organism=Citrus clementina; type=EST; length=709bpback to top |