CX296506

Overview
NameCX296506
Unique NameCX296506
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length709
Libraries
Library NameType
FerrChloL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX296506 vs. ExPASy Swiss-Prot
Match: RBS_ANASP (Ribulose bisphosphate carboxylase small chain OS=Anabaena sp. (strain PCC 7120) GN=cbbS PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 1.728e-15
Identity = 32/92 (34.78%), Postives = 53/92 (57.61%), Query Frame = 1
Query:  244 KKFETLSYLPPLSDEALLKEISYLIRSGWIPCLEFELEKGWVYREHHRSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRI 519
            +++ETLSYLPPL+D  + K++ Y++  G+IP +EF                     YWT+WKLP++G   + +VL EV   + +YP  ++R+
Sbjct:    8 RRYETLSYLPPLTDVQIEKQVQYILSQGYIPAVEF------------NEVSEPTELYWTLWKLPLFGAKTSREVLAEVQSCRSQYPGHYIRV 87          

HSP 2 Score: 28.8758 bits (63), Expect = 1.728e-15
Identity = 12/24 (50.00%), Postives = 15/24 (62.50%), Query Frame = 2
Query:  506 HSSEFIGFDNKRQVQCISFIAAKP 577
            H    +GFDN +Q Q +SFI  KP
Sbjct:   83 HYIRVVGFDNIKQCQILSFIVHKP 106          
BLAST of CX296506 vs. ExPASy Swiss-Prot
Match: RBS2_THIFE (Ribulose bisphosphate carboxylase small chain 2 OS=Thiobacillus ferrooxidans GN=cbbS2 PE=3 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 1.686e-14
Identity = 38/91 (41.76%), Postives = 51/91 (56.04%), Query Frame = 1
Query:  247 KFETLSYLPPLSDEALLKEISYLIRSGWIPCLEFELEKGWVYREHHRSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRI 519
            KFETLSYLP L+ + + ++++Y++  GW P +E            H  P    G YW MWKLPM+G TD   +LKE     K  PH+ VRI
Sbjct:   18 KFETLSYLPALTADEIRQQVAYIVSKGWNPAVE------------HTEPENAFGNYWYMWKLPMFGETDVDTILKEAERCHKRNPHNHVRI 96          
BLAST of CX296506 vs. ExPASy Swiss-Prot
Match: RBS_CYAPA (Ribulose bisphosphate carboxylase small chain OS=Cyanophora paradoxa GN=rbcS PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 4.014e-14
Identity = 29/92 (31.52%), Postives = 55/92 (59.78%), Query Frame = 1
Query:  244 KKFETLSYLPPLSDEALLKEISYLIRSGWIPCLEFELEKGWVYREHHRSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRI 519
            +KFET SYLPPL+D+ + +++ Y + +G+ P +EF               G  +   WT+WKLP++G     +VL E+   ++++P++++R+
Sbjct:    7 RKFETFSYLPPLNDQQIARQLQYALSNGYSPAIEFSF------------TGKAEDLVWTLWKLPLFGAQSPEEVLSEIQACKQQFPNAYIRV 86          

HSP 2 Score: 23.8682 bits (50), Expect = 4.014e-14
Identity = 9/19 (47.37%), Postives = 13/19 (68.42%), Query Frame = 2
Query:  521 IGFDNKRQVQCISFIAAKP 577
            + FD+ RQVQ + F+  KP
Sbjct:   87 VAFDSIRQVQTLMFLVYKP 105          
BLAST of CX296506 vs. ExPASy Swiss-Prot
Match: RBS1_CHRVI (Ribulose bisphosphate carboxylase small chain 1 OS=Chromatium vinosum GN=cbbS1 PE=1 SV=4)

HSP 1 Score: 73.1738 bits (178), Expect = 1.578e-12
Identity = 34/92 (36.96%), Postives = 49/92 (53.26%), Query Frame = 1
Query:  244 KKFETLSYLPPLSDEALLKEISYLIRSGWIPCLEFELEKGWVYREHHRSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRI 519
            +KFET SYLP +  + + K++ Y++  GW P +E            H  P      YW MWKLPM+G TD   +LKE     K +P++ VR+
Sbjct:   17 RKFETFSYLPRMDADRIRKQVEYIVSKGWNPAIE------------HTEPENAFDHYWYMWKLPMFGETDIDTILKEAEACHKAHPNNHVRL 96          
BLAST of CX296506 vs. ExPASy Swiss-Prot
Match: RBS_THIDA (Ribulose bisphosphate carboxylase small chain OS=Thiobacillus denitrificans (strain ATCC 25259) GN=cbbS PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 5.996e-12
Identity = 34/92 (36.96%), Postives = 49/92 (53.26%), Query Frame = 1
Query:  244 KKFETLSYLPPLSDEALLKEISYLIRSGWIPCLEFELEKGWVYREHHRSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRI 519
            +KFET SYLP ++   + K++ YL+  GW P +E            H  P +    YW MWKLPM+G TD  ++L E     K  P++ VR+
Sbjct:   17 RKFETFSYLPAMNAADIRKQVEYLVSKGWNPAIE------------HTEPEHLMDSYWYMWKLPMFGETDIDRILGEAEACHKANPNNHVRL 96          
BLAST of CX296506 vs. ExPASy Swiss-Prot
Match: RBS_ALVHS (Ribulose bisphosphate carboxylase small chain OS=Alvinoconcha hessleri symbiotic bacterium GN=cbbS PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 5.996e-12
Identity = 35/92 (38.04%), Postives = 46/92 (50.00%), Query Frame = 1
Query:  244 KKFETLSYLPPLSDEALLKEISYLIRSGWIPCLEFELEKGWVYREHHRSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRI 519
            +KFET SYLP L  E + K++ Y++  GW P +E            H  P      YW MWKLPM+G TD   +L E     K +P   VR+
Sbjct:   17 RKFETFSYLPELGVEKIRKQVEYIVSKGWNPAVE------------HTEPENAFDHYWYMWKLPMFGETDVDAILAEAEACHKAHPSHHVRL 96          
BLAST of CX296506 vs. ExPASy Swiss-Prot
Match: RBS_PSEHY (Ribulose bisphosphate carboxylase small chain OS=Pseudomonas hydrogenothermophila GN=cbbS PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.336e-11
Identity = 32/92 (34.78%), Postives = 50/92 (54.35%), Query Frame = 1
Query:  244 KKFETLSYLPPLSDEALLKEISYLIRSGWIPCLEFELEKGWVYREHHRSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRI 519
            K+FET SYLP +S E + K+I Y++  GW P +E            H  P      YW MWKLPM+G TD  +++ E+   ++  P+  +++
Sbjct:   24 KRFETFSYLPQMSAEEIRKQIEYIVSKGWNPAIE------------HCEPENAILHYWYMWKLPMFGETDVDKIIAEIEACKRSNPNHLIKL 103          
BLAST of CX296506 vs. ExPASy Swiss-Prot
Match: RBS2_CHRVI (Ribulose bisphosphate carboxylase small chain 2 OS=Chromatium vinosum GN=cbbS2 PE=1 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.336e-11
Identity = 36/105 (34.29%), Postives = 52/105 (49.52%), Query Frame = 1
Query:  247 KFETLSYLPPLSDEALLKEISYLIRSGWIPCLEFELEKGWVYREHHRSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIYRI*QQASSAVHQF 561
            ++ET SYLPPL+ E +L++I Y++ +GW   LE            H  P      YW MWK+P +G  D   +L E+   ++ YP   VR+      A S  H F
Sbjct:   15 RYETFSYLPPLNREEILEQILYILDNGWNASLE------------HEHPDRAFEYYWPMWKMPFFGEQDPNVILTEIESCRRSYPDHHVRLVGYDTYAQSKGHSF 107          
BLAST of CX296506 vs. ExPASy Swiss-Prot
Match: RBS1_HYDMR (Ribulose bisphosphate carboxylase small chain 1 OS=Hydrogenovibrio marinus GN=cbbS-1 PE=1 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 3.886e-11
Identity = 35/92 (38.04%), Postives = 48/92 (52.17%), Query Frame = 1
Query:  244 KKFETLSYLPPLSDEALLKEISYLIRSGWIPCLEFELEKGWVYREHHRSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRI 519
            +K ET SYLP ++ + +  ++ Y+I  GW P +E            H  P      YW MWKLPM+G TDA  VL EV    K  P++ VR+
Sbjct:   17 RKAETFSYLPKMTTDQIKAQVEYIISKGWNPAIE------------HSEPENAFSYYWYMWKLPMFGDTDANVVLAEVDACIKANPNNHVRL 96          
BLAST of CX296506 vs. ExPASy Swiss-Prot
Match: RBS2_HYDMR (Ribulose bisphosphate carboxylase small chain 2 OS=Hydrogenovibrio marinus GN=cbbS-2 PE=1 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 5.076e-11
Identity = 31/89 (34.83%), Postives = 45/89 (50.56%), Query Frame = 1
Query:  253 ETLSYLPPLSDEALLKEISYLIRSGWIPCLEFELEKGWVYREHHRSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRI 519
            ET S+LP  + + +  +I Y+I  GW P LE            H +P      YW MWKLPM+G  D   VL E+ + +  YP+  +R+
Sbjct:   15 ETFSFLPEFTADEIYDQIVYIINQGWTPALE------------HEAPEAASSHYWGMWKLPMFGTRDPNAVLAEIDQCRAAYPNHMIRL 91          
The following BLAST results are available for this feature:
BLAST of CX296506 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 120
Match NameE-valueIdentityDescription
RBS_ANASP1.728e-1534.78Ribulose bisphosphate carboxylase small chain OS=A... [more]
RBS2_THIFE1.686e-1441.76Ribulose bisphosphate carboxylase small chain 2 OS... [more]
RBS_CYAPA4.014e-1431.52Ribulose bisphosphate carboxylase small chain OS=C... [more]
RBS1_CHRVI1.578e-1236.96Ribulose bisphosphate carboxylase small chain 1 OS... [more]
RBS_THIDA5.996e-1236.96Ribulose bisphosphate carboxylase small chain OS=T... [more]
RBS_ALVHS5.996e-1238.04Ribulose bisphosphate carboxylase small chain OS=A... [more]
RBS_PSEHY1.336e-1134.78Ribulose bisphosphate carboxylase small chain OS=P... [more]
RBS2_CHRVI1.336e-1134.29Ribulose bisphosphate carboxylase small chain 2 OS... [more]
RBS1_HYDMR3.886e-1138.04Ribulose bisphosphate carboxylase small chain 1 OS... [more]
RBS2_HYDMR5.076e-1134.83Ribulose bisphosphate carboxylase small chain 2 OS... [more]

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Properties
Property NameValue
Genbank descriptionC05142A05SK FerrChloL1 Citrus clementina cDNA clone C05142A05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX296506 ID=CX296506; Name=CX296506; organism=Citrus clementina; type=EST; length=709bp
GAGGCCTCGTGCCGAATTCGGCACGAGGAGCAAGTACCAATGGCTTCCTC
AATGATCTCATCGGCCACCGTTGCCACCGCGAACCGCGCCAGCCTTGCTC
AGGCCAGCATGGTCGCCCCCTTCACCGGCCTCAAGTCTTCTTCTGCTTTC
CCAGCAACCAAGAAGACCAACAATGACATTACTTCCATTGCAAGCAACGG
CGGAAGAGTCCAATGCATGAAGGTGTGGCCACCAACTGGCTTGAAGAAGT
TCGAGACTCTCTCATACCTCCCGCCACTGTCCGATGAAGCTTTGCTCAAG
GAAATCAGTTACCTTATCCGCTCCGGCTGGATTCCCTGCTTGGAATTCGA
GTTGGAGAAAGGATGGGTGTACCGTGAGCACCACAGGTCACCAGGATACT
ACGATGGACGCTACTGGACAATGTGGAAGCTGCCCATGTATGGGTGCACA
GATGCAACCCAGGTTTTGAAGGAGGTTGGGGAGGTCCAGAAGGAATACCC
ACATTCATTCGTCCGAATTTATCGGATTTGACAACAAGCGTCAAGTGCAG
TGCATCAGTTTCATTGCTGCCAAGCCACCAGGCGTCTAGGTTCCCAATTA
AATTTGTGTAACCACCCATGCAATATTGTTGATTATTATTATGTGTAACC
CCCATAATGATCATTCGATCAATGGGGGTTCGGTTTGCGTTTAATTTGTA
CTTAGGCTG
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