CX296506
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CX296506 vs. ExPASy Swiss-Prot
Match: RBS_ANASP (Ribulose bisphosphate carboxylase small chain OS=Anabaena sp. (strain PCC 7120) GN=cbbS PE=3 SV=1) HSP 1 Score: 72.7886 bits (177), Expect = 1.728e-15 Identity = 32/92 (34.78%), Postives = 53/92 (57.61%), Query Frame = 1 Query: 244 KKFETLSYLPPLSDEALLKEISYLIRSGWIPCLEFELEKGWVYREHHRSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRI 519 +++ETLSYLPPL+D + K++ Y++ G+IP +EF YWT+WKLP++G + +VL EV + +YP ++R+ Sbjct: 8 RRYETLSYLPPLTDVQIEKQVQYILSQGYIPAVEF------------NEVSEPTELYWTLWKLPLFGAKTSREVLAEVQSCRSQYPGHYIRV 87 HSP 2 Score: 28.8758 bits (63), Expect = 1.728e-15 Identity = 12/24 (50.00%), Postives = 15/24 (62.50%), Query Frame = 2 Query: 506 HSSEFIGFDNKRQVQCISFIAAKP 577 H +GFDN +Q Q +SFI KP Sbjct: 83 HYIRVVGFDNIKQCQILSFIVHKP 106
BLAST of CX296506 vs. ExPASy Swiss-Prot
Match: RBS2_THIFE (Ribulose bisphosphate carboxylase small chain 2 OS=Thiobacillus ferrooxidans GN=cbbS2 PE=3 SV=1) HSP 1 Score: 79.7221 bits (195), Expect = 1.686e-14 Identity = 38/91 (41.76%), Postives = 51/91 (56.04%), Query Frame = 1 Query: 247 KFETLSYLPPLSDEALLKEISYLIRSGWIPCLEFELEKGWVYREHHRSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRI 519 KFETLSYLP L+ + + ++++Y++ GW P +E H P G YW MWKLPM+G TD +LKE K PH+ VRI Sbjct: 18 KFETLSYLPALTADEIRQQVAYIVSKGWNPAVE------------HTEPENAFGNYWYMWKLPMFGETDVDTILKEAERCHKRNPHNHVRI 96
BLAST of CX296506 vs. ExPASy Swiss-Prot
Match: RBS_CYAPA (Ribulose bisphosphate carboxylase small chain OS=Cyanophora paradoxa GN=rbcS PE=3 SV=1) HSP 1 Score: 73.1738 bits (178), Expect = 4.014e-14 Identity = 29/92 (31.52%), Postives = 55/92 (59.78%), Query Frame = 1 Query: 244 KKFETLSYLPPLSDEALLKEISYLIRSGWIPCLEFELEKGWVYREHHRSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRI 519 +KFET SYLPPL+D+ + +++ Y + +G+ P +EF G + WT+WKLP++G +VL E+ ++++P++++R+ Sbjct: 7 RKFETFSYLPPLNDQQIARQLQYALSNGYSPAIEFSF------------TGKAEDLVWTLWKLPLFGAQSPEEVLSEIQACKQQFPNAYIRV 86 HSP 2 Score: 23.8682 bits (50), Expect = 4.014e-14 Identity = 9/19 (47.37%), Postives = 13/19 (68.42%), Query Frame = 2 Query: 521 IGFDNKRQVQCISFIAAKP 577 + FD+ RQVQ + F+ KP Sbjct: 87 VAFDSIRQVQTLMFLVYKP 105
BLAST of CX296506 vs. ExPASy Swiss-Prot
Match: RBS1_CHRVI (Ribulose bisphosphate carboxylase small chain 1 OS=Chromatium vinosum GN=cbbS1 PE=1 SV=4) HSP 1 Score: 73.1738 bits (178), Expect = 1.578e-12 Identity = 34/92 (36.96%), Postives = 49/92 (53.26%), Query Frame = 1 Query: 244 KKFETLSYLPPLSDEALLKEISYLIRSGWIPCLEFELEKGWVYREHHRSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRI 519 +KFET SYLP + + + K++ Y++ GW P +E H P YW MWKLPM+G TD +LKE K +P++ VR+ Sbjct: 17 RKFETFSYLPRMDADRIRKQVEYIVSKGWNPAIE------------HTEPENAFDHYWYMWKLPMFGETDIDTILKEAEACHKAHPNNHVRL 96
BLAST of CX296506 vs. ExPASy Swiss-Prot
Match: RBS_THIDA (Ribulose bisphosphate carboxylase small chain OS=Thiobacillus denitrificans (strain ATCC 25259) GN=cbbS PE=3 SV=1) HSP 1 Score: 71.2478 bits (173), Expect = 5.996e-12 Identity = 34/92 (36.96%), Postives = 49/92 (53.26%), Query Frame = 1 Query: 244 KKFETLSYLPPLSDEALLKEISYLIRSGWIPCLEFELEKGWVYREHHRSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRI 519 +KFET SYLP ++ + K++ YL+ GW P +E H P + YW MWKLPM+G TD ++L E K P++ VR+ Sbjct: 17 RKFETFSYLPAMNAADIRKQVEYLVSKGWNPAIE------------HTEPEHLMDSYWYMWKLPMFGETDIDRILGEAEACHKANPNNHVRL 96
BLAST of CX296506 vs. ExPASy Swiss-Prot
Match: RBS_ALVHS (Ribulose bisphosphate carboxylase small chain OS=Alvinoconcha hessleri symbiotic bacterium GN=cbbS PE=3 SV=1) HSP 1 Score: 71.2478 bits (173), Expect = 5.996e-12 Identity = 35/92 (38.04%), Postives = 46/92 (50.00%), Query Frame = 1 Query: 244 KKFETLSYLPPLSDEALLKEISYLIRSGWIPCLEFELEKGWVYREHHRSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRI 519 +KFET SYLP L E + K++ Y++ GW P +E H P YW MWKLPM+G TD +L E K +P VR+ Sbjct: 17 RKFETFSYLPELGVEKIRKQVEYIVSKGWNPAVE------------HTEPENAFDHYWYMWKLPMFGETDVDAILAEAEACHKAHPSHHVRL 96
BLAST of CX296506 vs. ExPASy Swiss-Prot
Match: RBS_PSEHY (Ribulose bisphosphate carboxylase small chain OS=Pseudomonas hydrogenothermophila GN=cbbS PE=3 SV=1) HSP 1 Score: 70.0922 bits (170), Expect = 1.336e-11 Identity = 32/92 (34.78%), Postives = 50/92 (54.35%), Query Frame = 1 Query: 244 KKFETLSYLPPLSDEALLKEISYLIRSGWIPCLEFELEKGWVYREHHRSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRI 519 K+FET SYLP +S E + K+I Y++ GW P +E H P YW MWKLPM+G TD +++ E+ ++ P+ +++ Sbjct: 24 KRFETFSYLPQMSAEEIRKQIEYIVSKGWNPAIE------------HCEPENAILHYWYMWKLPMFGETDVDKIIAEIEACKRSNPNHLIKL 103
BLAST of CX296506 vs. ExPASy Swiss-Prot
Match: RBS2_CHRVI (Ribulose bisphosphate carboxylase small chain 2 OS=Chromatium vinosum GN=cbbS2 PE=1 SV=1) HSP 1 Score: 70.0922 bits (170), Expect = 1.336e-11 Identity = 36/105 (34.29%), Postives = 52/105 (49.52%), Query Frame = 1 Query: 247 KFETLSYLPPLSDEALLKEISYLIRSGWIPCLEFELEKGWVYREHHRSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIYRI*QQASSAVHQF 561 ++ET SYLPPL+ E +L++I Y++ +GW LE H P YW MWK+P +G D +L E+ ++ YP VR+ A S H F Sbjct: 15 RYETFSYLPPLNREEILEQILYILDNGWNASLE------------HEHPDRAFEYYWPMWKMPFFGEQDPNVILTEIESCRRSYPDHHVRLVGYDTYAQSKGHSF 107
BLAST of CX296506 vs. ExPASy Swiss-Prot
Match: RBS1_HYDMR (Ribulose bisphosphate carboxylase small chain 1 OS=Hydrogenovibrio marinus GN=cbbS-1 PE=1 SV=1) HSP 1 Score: 68.5514 bits (166), Expect = 3.886e-11 Identity = 35/92 (38.04%), Postives = 48/92 (52.17%), Query Frame = 1 Query: 244 KKFETLSYLPPLSDEALLKEISYLIRSGWIPCLEFELEKGWVYREHHRSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRI 519 +K ET SYLP ++ + + ++ Y+I GW P +E H P YW MWKLPM+G TDA VL EV K P++ VR+ Sbjct: 17 RKAETFSYLPKMTTDQIKAQVEYIISKGWNPAIE------------HSEPENAFSYYWYMWKLPMFGDTDANVVLAEVDACIKANPNNHVRL 96
BLAST of CX296506 vs. ExPASy Swiss-Prot
Match: RBS2_HYDMR (Ribulose bisphosphate carboxylase small chain 2 OS=Hydrogenovibrio marinus GN=cbbS-2 PE=1 SV=1) HSP 1 Score: 68.1662 bits (165), Expect = 5.076e-11 Identity = 31/89 (34.83%), Postives = 45/89 (50.56%), Query Frame = 1 Query: 253 ETLSYLPPLSDEALLKEISYLIRSGWIPCLEFELEKGWVYREHHRSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRI 519 ET S+LP + + + +I Y+I GW P LE H +P YW MWKLPM+G D VL E+ + + YP+ +R+ Sbjct: 15 ETFSFLPEFTADEIYDQIVYIINQGWTPALE------------HEAPEAASSHYWGMWKLPMFGTRDPNAVLAEIDQCRAAYPNHMIRL 91 The following BLAST results are available for this feature:
BLAST of CX296506 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 120
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Sequences
The
following sequences are available for this feature:
EST sequence >CX296506 ID=CX296506; Name=CX296506; organism=Citrus clementina; type=EST; length=709bpback to top |