CX296506

Overview
NameCX296506
Unique NameCX296506
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length709
Libraries
Library NameType
FerrChloL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig9879 contig Ccv1_Contig9879:1..708. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CX296506 vs. ExPASy Swiss-Prot
Match: RBS2_PETHY (Ribulose bisphosphate carboxylase small chain SSU11A, chloroplastic OS=Petunia hybrida GN=RBCS PE=3 SV=1)

HSP 1 Score: 244.973 bits (624), Expect = 5.642e-71
Identity = 115/160 (71.88%), Postives = 137/160 (85.62%), Query Frame = 1 
Query:   40 MASSMISSATVATANRASLAQASMVAPFTGLKSSSAFPATKKTNNDITSIASNGGRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEISYLIRSGWIPCLEFELEKGWVYREHHRSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRI 519
            MASS++SSA VAT+  A  AQASMVAPFTGLKS+++FP ++K N DITSIASNGGRVQCM+VWPP G KK+ETLSYLP L+DE LLKEI YL+  GW+PCLEFE E G+VYRE+H SP YYDGRYWTMWKLPM+GCTDATQVL E+ E +K YP++++RI
Sbjct:    1 MASSVMSSAAVATSTNA--AQASMVAPFTGLKSAASFPVSRKQNLDITSIASNGGRVQCMQVWPPYGKKKYETLSYLPDLTDEQLLKEIEYLLNKGWVPCLEFETEHGFVYREYHASPRYYDGRYWTMWKLPMFGCTDATQVLGELQEAKKAYPNAWIRI 158

HSP 2 Score: 42.743 bits (99), Expect = 5.642e-71
Identity = 19/21 (90.48%), Postives = 19/21 (90.48%), Query Frame = 2 
Query:  521 IGFDNKRQVQCISFIAAKPPG 583
            IGFDN RQVQCISFIA KPPG
Sbjct:  159 IGFDNVRQVQCISFIAYKPPG 179
[Close]
BLAST of CX296506 vs. ExPASy Swiss-Prot
Match: RBS1_SOLLC (Ribulose bisphosphate carboxylase small chain 1, chloroplastic OS=Solanum lycopersicum GN=RBCS-1 PE=2 SV=2)

HSP 1 Score: 247.669 bits (631), Expect = 7.359e-71
Identity = 116/161 (72.05%), Postives = 141/161 (87.58%), Query Frame = 1 
Query:   40 MASSMISSATVATANRASLAQASMVAPFTGLKSSSAFPATKKTNN-DITSIASNGGRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEISYLIRSGWIPCLEFELEKGWVYREHHRSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRI 519
            MASS++SSA  AT  R+++AQASMVAPFTGLKS+++FP TKK NN DITS+ASNGGRV+CM+VWPP  +KK+ETLSYLP LSDE LL EI YL+++GW+PCLEFE E+G+VYRE++ SPGYYDGRYWTMWKLPM+GCTDATQVL EV E +K YP ++VRI
Sbjct:    1 MASSIVSSAAAAT--RSNVAQASMVAPFTGLKSAASFPVTKKNNNVDITSLASNGGRVRCMQVWPPINMKKYETLSYLPDLSDEQLLSEIEYLLKNGWVPCLEFETERGFVYRENNSSPGYYDGRYWTMWKLPMFGCTDATQVLAEVQEAKKAYPQAWVRI 159

HSP 2 Score: 39.6614 bits (91), Expect = 7.359e-71
Identity = 18/21 (85.71%), Postives = 18/21 (85.71%), Query Frame = 2 
Query:  521 IGFDNKRQVQCISFIAAKPPG 583
            IGFDN RQVQCISFIA KP G
Sbjct:  160 IGFDNVRQVQCISFIAYKPEG 180
[Close]
BLAST of CX296506 vs. ExPASy Swiss-Prot
Match: RBS1B_ARATH (Ribulose bisphosphate carboxylase small chain 1B, chloroplastic OS=Arabidopsis thaliana GN=RBCS-1B PE=1 SV=1)

HSP 1 Score: 246.514 bits (628), Expect = 7.359e-71
Identity = 116/160 (72.50%), Postives = 134/160 (83.75%), Query Frame = 1 
Query:   40 MASSMISSATVATANRASLAQASMVAPFTGLKSSSAFPATKKTNNDITSIASNGGRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEISYLIRSGWIPCLEFELEKGWVYREHHRSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRI 519
            MASSM+SSA V T    S AQA+MVAPFTGLKSS++FP T+K NNDITSI SNGGRV CMKVWPP G KKFETLSYLP L+D  L KE+ YL+R+ WIPC+EFELE G+VYREH  +PGYYDGRYWTMWKLP++GCTD+ QVLKEV E +KEYP +F+RI
Sbjct:    1 MASSMLSSAAVVT----SPAQATMVAPFTGLKSSASFPVTRKANNDITSITSNGGRVSCMKVWPPIGKKKFETLSYLPDLTDVELAKEVDYLLRNKWIPCVEFELEHGFVYREHGNTPGYYDGRYWTMWKLPLFGCTDSAQVLKEVEECKKEYPGAFIRI 156

HSP 2 Score: 40.817 bits (94), Expect = 7.359e-71
Identity = 18/20 (90.00%), Postives = 18/20 (90.00%), Query Frame = 2 
Query:  521 IGFDNKRQVQCISFIAAKPP 580
            IGFDN RQVQCISFIA KPP
Sbjct:  157 IGFDNTRQVQCISFIAYKPP 176
[Close]
BLAST of CX296506 vs. ExPASy Swiss-Prot
Match: RBS3A_SOLLC (Ribulose bisphosphate carboxylase small chain 3A/3C, chloroplastic OS=Solanum lycopersicum GN=RBCS-3A/3C PE=3 SV=1)

HSP 1 Score: 247.284 bits (630), Expect = 9.597e-71
Identity = 116/160 (72.50%), Postives = 138/160 (86.25%), Query Frame = 1 
Query:   40 MASSMISSATVATANRASLAQASMVAPFTGLKSSSAFPATKKTNNDITSIASNGGRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEISYLIRSGWIPCLEFELEKGWVYREHHRSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRI 519
            MASS++SSA VAT  R + AQASMVAPFTGLKS+++FP ++K N DITSIASNGGRV CM+VWPP  +KK+ETLSYLP LSDE LL EI YL+++GW+PCLEFE E G+VYRE+H+SPGYYDGRYWTMWKLPM+GCTDATQVL EV E +K YP ++VRI
Sbjct:    1 MASSVMSSAAVAT--RGNGAQASMVAPFTGLKSTASFPVSRKQNLDITSIASNGGRVSCMQVWPPINMKKYETLSYLPDLSDEQLLSEIEYLLKNGWVPCLEFETEHGFVYRENHKSPGYYDGRYWTMWKLPMFGCTDATQVLAEVQEAKKAYPQAWVRI 158

HSP 2 Score: 39.6614 bits (91), Expect = 9.597e-71
Identity = 18/21 (85.71%), Postives = 18/21 (85.71%), Query Frame = 2 
Query:  521 IGFDNKRQVQCISFIAAKPPG 583
            IGFDN RQVQCISFIA KP G
Sbjct:  159 IGFDNVRQVQCISFIAYKPEG 179
[Close]
BLAST of CX296506 vs. ExPASy Swiss-Prot
Match: RBSB_SOLTU (Ribulose bisphosphate carboxylase small chain 2B, chloroplastic OS=Solanum tuberosum GN=RBCS-2B PE=3 SV=1)

HSP 1 Score: 246.899 bits (629), Expect = 1.252e-70
Identity = 114/160 (71.25%), Postives = 140/160 (87.50%), Query Frame = 1 
Query:   40 MASSMISSATVATANRASLAQASMVAPFTGLKSSSAFPATKKTNNDITSIASNGGRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEISYLIRSGWIPCLEFELEKGWVYREHHRSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRI 519
            MASS++SSA VAT  RA+ AQASMV PFTGLKS+++FP ++K N DITSIASNGGRV+CM+VWPP  +KK+ETLSYLP LSDE LLKE+ YL+++GW+PCLEFE E G+VYRE+++SPGYYDGRYWTMWKLPM+GCTDATQVL EV E +K YP +++RI
Sbjct:    1 MASSIVSSAAVAT--RANGAQASMVGPFTGLKSTASFPVSRKQNLDITSIASNGGRVRCMQVWPPINMKKYETLSYLPDLSDEQLLKEVEYLLKNGWVPCLEFETEHGFVYRENNKSPGYYDGRYWTMWKLPMFGCTDATQVLAEVEEAKKAYPQAWIRI 158

HSP 2 Score: 39.6614 bits (91), Expect = 1.252e-70
Identity = 18/21 (85.71%), Postives = 18/21 (85.71%), Query Frame = 2 
Query:  521 IGFDNKRQVQCISFIAAKPPG 583
            IGFDN RQVQCISFIA KP G
Sbjct:  159 IGFDNVRQVQCISFIAYKPEG 179
[Close]
BLAST of CX296506 vs. ExPASy Swiss-Prot
Match: RBS2_BRANA (Ribulose bisphosphate carboxylase small chain F1, chloroplastic OS=Brassica napus GN=RBCS F1 PE=3 SV=1)

HSP 1 Score: 245.358 bits (625), Expect = 1.252e-70
Identity = 116/160 (72.50%), Postives = 135/160 (84.38%), Query Frame = 1 
Query:   40 MASSMISSATVATANRASLAQASMVAPFTGLKSSSAFPATKKTNNDITSIASNGGRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEISYLIRSGWIPCLEFELEKGWVYREHHRSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRI 519
            MASSM+SSA V T    S AQA+MVAPFTGLKSS+AFP T+K NNDITSIASNGGRV CMKVWPP G KKFETLSYLP L++  L KE+ YL+R+ WIPC+EFELE G+VYREH  +PGYYDGRYWTMWKLP++GCTD+ QVLKEV E + EYP++F+RI
Sbjct:    1 MASSMLSSAAVVT----SPAQATMVAPFTGLKSSAAFPVTRKANNDITSIASNGGRVSCMKVWPPVGKKKFETLSYLPDLTEVELGKEVDYLLRNKWIPCVEFELEHGFVYREHGSTPGYYDGRYWTMWKLPLFGCTDSAQVLKEVQECKTEYPNAFIRI 156

HSP 2 Score: 41.2022 bits (95), Expect = 1.252e-70
Identity = 18/20 (90.00%), Postives = 18/20 (90.00%), Query Frame = 2 
Query:  521 IGFDNKRQVQCISFIAAKPP 580
            IGFDN RQVQCISFIA KPP
Sbjct:  157 IGFDNNRQVQCISFIAYKPP 176
[Close]
BLAST of CX296506 vs. ExPASy Swiss-Prot
Match: RBS2B_ARATH (Ribulose bisphosphate carboxylase small chain 2B, chloroplastic OS=Arabidopsis thaliana GN=RBCS-2B PE=2 SV=2)

HSP 1 Score: 245.358 bits (625), Expect = 1.632e-70
Identity = 116/160 (72.50%), Postives = 132/160 (82.50%), Query Frame = 1 
Query:   40 MASSMISSATVATANRASLAQASMVAPFTGLKSSSAFPATKKTNNDITSIASNGGRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEISYLIRSGWIPCLEFELEKGWVYREHHRSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRI 519
            MASSM SS  V T    S AQA+MVAPFTGLKSS++FP T+K NNDITSI SNGGRV CMKVWPP G KKFETLSYLP LSD  L KE+ YL+R+ WIPC+EFELE G+VYREH  +PGYYDGRYWTMWKLP++GCTD+ QVLKEV E +KEYP +F+RI
Sbjct:    1 MASSMFSSTAVVT----SPAQATMVAPFTGLKSSASFPVTRKANNDITSITSNGGRVSCMKVWPPIGKKKFETLSYLPDLSDVELAKEVDYLLRNKWIPCVEFELEHGFVYREHGNTPGYYDGRYWTMWKLPLFGCTDSAQVLKEVEECKKEYPGAFIRI 156

HSP 2 Score: 40.817 bits (94), Expect = 1.632e-70
Identity = 18/20 (90.00%), Postives = 18/20 (90.00%), Query Frame = 2 
Query:  521 IGFDNKRQVQCISFIAAKPP 580
            IGFDN RQVQCISFIA KPP
Sbjct:  157 IGFDNTRQVQCISFIAYKPP 176
[Close]
BLAST of CX296506 vs. ExPASy Swiss-Prot
Match: RBS1_BRANA (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Brassica napus GN=RBCS PE=2 SV=2)

HSP 1 Score: 244.973 bits (624), Expect = 1.632e-70
Identity = 116/160 (72.50%), Postives = 134/160 (83.75%), Query Frame = 1 
Query:   40 MASSMISSATVATANRASLAQASMVAPFTGLKSSSAFPATKKTNNDITSIASNGGRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEISYLIRSGWIPCLEFELEKGWVYREHHRSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRI 519
            MASSM+SSA V T    S AQA+MVAPFTGLKSSSAFP T+K NNDITSI SNGGRV CMKVWPP G KKFETLSYLP L++  L KE+ YL+R+ WIPC+EFELE G+VYREH  +PGYYDGRYWTMWKLP++GCTD+ QVLKEV E + EYP++F+RI
Sbjct:    1 MASSMLSSAAVVT----SPAQATMVAPFTGLKSSSAFPVTRKANNDITSIVSNGGRVSCMKVWPPVGKKKFETLSYLPDLTEVELGKEVDYLLRNKWIPCVEFELEHGFVYREHGSTPGYYDGRYWTMWKLPLFGCTDSAQVLKEVQECKTEYPNAFIRI 156

HSP 2 Score: 41.2022 bits (95), Expect = 1.632e-70
Identity = 18/20 (90.00%), Postives = 18/20 (90.00%), Query Frame = 2 
Query:  521 IGFDNKRQVQCISFIAAKPP 580
            IGFDN RQVQCISFIA KPP
Sbjct:  157 IGFDNNRQVQCISFIAYKPP 176
[Close]
BLAST of CX296506 vs. ExPASy Swiss-Prot
Match: RBSC_SOLTU (Ribulose bisphosphate carboxylase small chain 2C, chloroplastic OS=Solanum tuberosum GN=RBCS-2C PE=3 SV=1)

HSP 1 Score: 246.128 bits (627), Expect = 2.129e-70
Identity = 114/160 (71.25%), Postives = 140/160 (87.50%), Query Frame = 1 
Query:   40 MASSMISSATVATANRASLAQASMVAPFTGLKSSSAFPATKKTNNDITSIASNGGRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEISYLIRSGWIPCLEFELEKGWVYREHHRSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRI 519
            MASS++SSA VAT  R + AQASMVAPFTGLKS+++FP ++K N DITSIASNGGRV+CM+VWPP  +KK+ETLSYLP LSDE LLKE+ YL+++GW+PCLEFE E G+VYRE+++SPGYYDGRYWTMWKLPM+GCTDATQVL EV E +K YP +++RI
Sbjct:    1 MASSVMSSAAVAT--RGNGAQASMVAPFTGLKSTASFPVSRKQNLDITSIASNGGRVRCMQVWPPINMKKYETLSYLPDLSDEQLLKEVEYLLKNGWVPCLEFETEHGFVYRENNKSPGYYDGRYWTMWKLPMFGCTDATQVLAEVEEAKKAYPQAWIRI 158

HSP 2 Score: 39.6614 bits (91), Expect = 2.129e-70
Identity = 18/21 (85.71%), Postives = 18/21 (85.71%), Query Frame = 2 
Query:  521 IGFDNKRQVQCISFIAAKPPG 583
            IGFDN RQVQCISFIA KP G
Sbjct:  159 IGFDNVRQVQCISFIAYKPEG 179
[Close]
BLAST of CX296506 vs. ExPASy Swiss-Prot
Match: RBSA_SOLTU (Ribulose bisphosphate carboxylase small chain 2A, chloroplastic OS=Solanum tuberosum GN=RBCS-2A PE=3 SV=1)

HSP 1 Score: 246.128 bits (627), Expect = 2.129e-70
Identity = 114/160 (71.25%), Postives = 140/160 (87.50%), Query Frame = 1 
Query:   40 MASSMISSATVATANRASLAQASMVAPFTGLKSSSAFPATKKTNNDITSIASNGGRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEISYLIRSGWIPCLEFELEKGWVYREHHRSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRI 519
            MASS++SSA VAT  R + AQASMVAPFTGLKS+++FP ++K N DITSIASNGGRV+CM+VWPP  +KK+ETLSYLP LSDE LLKE+ YL+++GW+PCLEFE E G+VYRE+++SPGYYDGRYWTMWKLPM+GCTDATQVL EV E +K YP +++RI
Sbjct:    1 MASSVMSSAAVAT--RGNGAQASMVAPFTGLKSAASFPVSRKQNLDITSIASNGGRVRCMQVWPPINMKKYETLSYLPDLSDEQLLKEVEYLLKNGWVPCLEFETEHGFVYRENNKSPGYYDGRYWTMWKLPMFGCTDATQVLAEVEEAKKAYPQAWIRI 158

HSP 2 Score: 39.6614 bits (91), Expect = 2.129e-70
Identity = 18/21 (85.71%), Postives = 18/21 (85.71%), Query Frame = 2 
Query:  521 IGFDNKRQVQCISFIAAKPPG 583
            IGFDN RQVQCISFIA KP G
Sbjct:  159 IGFDNVRQVQCISFIAYKPEG 179
The following BLAST results are available for this feature:
BLAST of CX296506 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 120
Match NameE-valueIdentityDescription
RBS2_PETHY5.642e-7171.88Ribulose bisphosphate carboxylase small chain SSU1... [more]
RBS1_SOLLC7.359e-7172.05Ribulose bisphosphate carboxylase small chain 1, c... [more]
RBS1B_ARATH7.359e-7172.50Ribulose bisphosphate carboxylase small chain 1B, ... [more]
RBS3A_SOLLC9.597e-7172.50Ribulose bisphosphate carboxylase small chain 3A/3... [more]
RBSB_SOLTU1.252e-7071.25Ribulose bisphosphate carboxylase small chain 2B, ... [more]
RBS2_BRANA1.252e-7072.50Ribulose bisphosphate carboxylase small chain F1, ... [more]
RBS2B_ARATH1.632e-7072.50Ribulose bisphosphate carboxylase small chain 2B, ... [more]
RBS1_BRANA1.632e-7072.50Ribulose bisphosphate carboxylase small chain, chl... [more]
RBSC_SOLTU2.129e-7071.25Ribulose bisphosphate carboxylase small chain 2C, ... [more]
RBSA_SOLTU2.129e-7071.25Ribulose bisphosphate carboxylase small chain 2A, ... [more]

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Properties
Property NameValue
Genbank descriptionC05142A05SK FerrChloL1 Citrus clementina cDNA clone C05142A05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX296506 ID=CX296506; Name=CX296506; organism=Citrus clementina; type=EST; length=709bp
GAGGCCTCGTGCCGAATTCGGCACGAGGAGCAAGTACCAATGGCTTCCTC
AATGATCTCATCGGCCACCGTTGCCACCGCGAACCGCGCCAGCCTTGCTC
AGGCCAGCATGGTCGCCCCCTTCACCGGCCTCAAGTCTTCTTCTGCTTTC
CCAGCAACCAAGAAGACCAACAATGACATTACTTCCATTGCAAGCAACGG
CGGAAGAGTCCAATGCATGAAGGTGTGGCCACCAACTGGCTTGAAGAAGT
TCGAGACTCTCTCATACCTCCCGCCACTGTCCGATGAAGCTTTGCTCAAG
GAAATCAGTTACCTTATCCGCTCCGGCTGGATTCCCTGCTTGGAATTCGA
GTTGGAGAAAGGATGGGTGTACCGTGAGCACCACAGGTCACCAGGATACT
ACGATGGACGCTACTGGACAATGTGGAAGCTGCCCATGTATGGGTGCACA
GATGCAACCCAGGTTTTGAAGGAGGTTGGGGAGGTCCAGAAGGAATACCC
ACATTCATTCGTCCGAATTTATCGGATTTGACAACAAGCGTCAAGTGCAG
TGCATCAGTTTCATTGCTGCCAAGCCACCAGGCGTCTAGGTTCCCAATTA
AATTTGTGTAACCACCCATGCAATATTGTTGATTATTATTATGTGTAACC
CCCATAATGATCATTCGATCAATGGGGGTTCGGTTTGCGTTTAATTTGTA
CTTAGGCTG
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