CX296506
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CX296506 vs. ExPASy Swiss-Prot
Match: RBS1_PETHY (Ribulose bisphosphate carboxylase small chain SSU8, chloroplastic OS=Petunia hybrida GN=RBCS PE=3 SV=1) HSP 1 Score: 243.047 bits (619), Expect = 2.129e-70 Identity = 115/160 (71.88%), Postives = 135/160 (84.38%), Query Frame = 1 Query: 40 MASSMISSATVATANRASLAQASMVAPFTGLKSSSAFPATKKTNNDITSIASNGGRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEISYLIRSGWIPCLEFELEKGWVYREHHRSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRI 519 MASS+ISSA VAT R ++AQASMVAPF GLKS+ +FP + K N DITSIASNGGRVQCM+VWPP G KK+ETLSYLP L+DE LLKEI YL+ GW+PCLEFE E G+VYRE+H SP YYDGRYWTMWKLPM+GCTDATQVL E+ E +K YP++++RI Sbjct: 1 MASSVISSAAVAT--RTNVAQASMVAPFNGLKSAVSFPVSSKQNLDITSIASNGGRVQCMQVWPPYGKKKYETLSYLPDLTDEQLLKEIEYLLNKGWVPCLEFETEHGFVYREYHASPRYYDGRYWTMWKLPMFGCTDATQVLGELQEAKKAYPNAWIRI 158 HSP 2 Score: 42.743 bits (99), Expect = 2.129e-70 Identity = 19/21 (90.48%), Postives = 19/21 (90.48%), Query Frame = 2 Query: 521 IGFDNKRQVQCISFIAAKPPG 583 IGFDN RQVQCISFIA KPPG Sbjct: 159 IGFDNVRQVQCISFIAYKPPG 179
BLAST of CX296506 vs. ExPASy Swiss-Prot
Match: RBS1_MESCR (Ribulose bisphosphate carboxylase small chain 1, chloroplastic OS=Mesembryanthemum crystallinum GN=RBCS-1 PE=2 SV=2) HSP 1 Score: 247.284 bits (630), Expect = 3.620e-70 Identity = 115/160 (71.88%), Postives = 136/160 (85.00%), Query Frame = 1 Query: 40 MASSMISSATVATANRASLAQASMVAPFTGLKSSSAFPATKKTNNDITSIASNGGRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEISYLIRSGWIPCLEFELEKGWVYREHHRSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRI 519 MASSM+SSA VAT NR AQASMVAPF GLKS +AFP TKK NNDITS+A+NGGRVQCM+VWPP G KKFETLSYLPPLS+E+L+KE+ YL+ +GW+PCLEFE G+VYREH +PGYYDGRYWTMWKLPM+GCTD +QV+ E+ E +K YP +F+RI Sbjct: 1 MASSMVSSAAVATVNRTP-AQASMVAPFNGLKSVAAFPVTKK-NNDITSVATNGGRVQCMQVWPPLGKKKFETLSYLPPLSEESLMKEVQYLLNNGWVPCLEFEPTHGFVYREHGNTPGYYDGRYWTMWKLPMFGCTDPSQVVAELEEAKKAYPEAFIRI 158 HSP 2 Score: 37.7354 bits (86), Expect = 3.620e-70 Identity = 17/19 (89.47%), Postives = 17/19 (89.47%), Query Frame = 2 Query: 521 IGFDNKRQVQCISFIAAKP 577 IGFDN RQVQCISFIA KP Sbjct: 159 IGFDNVRQVQCISFIAYKP 177
BLAST of CX296506 vs. ExPASy Swiss-Prot
Match: RBS4_SOYBN (Ribulose bisphosphate carboxylase small chain 4, chloroplastic OS=Glycine max GN=RBCS-4 PE=3 SV=1) HSP 1 Score: 244.588 bits (623), Expect = 3.620e-70 Identity = 118/160 (73.75%), Postives = 131/160 (81.88%), Query Frame = 1 Query: 40 MASSMISSATVATANRASLAQASMVAPFTGLKSSSAFPATKKTNNDITSIASNGGRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEISYLIRSGWIPCLEFELEKGWVYREHHRSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRI 519 MASSMISS V T NRA A MVAPFTGLKS + P T+KTNNDITSIASNGGRVQCM+VWPP G KKFETLSYLP L D L KE+ YL+R GWIPCLEFELE G+VYREH+RS GYYDGRYWTMWKLPM+GCTDA+QVLKE+ E + YP+ F+RI Sbjct: 1 MASSMISSPAVTTVNRAG---AGMVAPFTGLKSMAGLP-TRKTNNDITSIASNGGRVQCMQVWPPVGKKKFETLSYLPDLDDAQLAKEVEYLLRKGWIPCLEFELEHGFVYREHNRSLGYYDGRYWTMWKLPMFGCTDASQVLKELQEAKTAYPNGFIRI 156 HSP 2 Score: 40.4318 bits (93), Expect = 3.620e-70 Identity = 18/20 (90.00%), Postives = 18/20 (90.00%), Query Frame = 2 Query: 521 IGFDNKRQVQCISFIAAKPP 580 IGFDN RQVQCISFIA KPP Sbjct: 157 IGFDNVRQVQCISFIAYKPP 176
BLAST of CX296506 vs. ExPASy Swiss-Prot
Match: RBS_GLYTO (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Glycine tomentella GN=RBCS PE=3 SV=1) HSP 1 Score: 243.817 bits (621), Expect = 6.157e-70 Identity = 117/160 (73.12%), Postives = 131/160 (81.88%), Query Frame = 1 Query: 40 MASSMISSATVATANRASLAQASMVAPFTGLKSSSAFPATKKTNNDITSIASNGGRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEISYLIRSGWIPCLEFELEKGWVYREHHRSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRI 519 MASSMISS V T NRA A VAPFTGLKS + FP T+KTNNDI SIASNGGRVQCM+VWP TG KKFETLSYLP L D L KE+ YL+R GWIPCLEFELE G+VYRE+HRSPGYYDGRYWTMWKLP++GCTDA+QVLKE+ E + YP+ F+RI Sbjct: 1 MASSMISSPAVTTVNRAG---AGTVAPFTGLKSMAGFP-TRKTNNDIASIASNGGRVQCMQVWPTTGKKKFETLSYLPDLDDAQLAKEVEYLLRKGWIPCLEFELEHGFVYRENHRSPGYYDGRYWTMWKLPVFGCTDASQVLKELQEAKTAYPNGFIRI 156 HSP 2 Score: 40.4318 bits (93), Expect = 6.157e-70 Identity = 18/20 (90.00%), Postives = 18/20 (90.00%), Query Frame = 2 Query: 521 IGFDNKRQVQCISFIAAKPP 580 IGFDN RQVQCISFIA KPP Sbjct: 157 IGFDNVRQVQCISFIAYKPP 176
BLAST of CX296506 vs. ExPASy Swiss-Prot
Match: RBS_CAPAN (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Capsicum annuum GN=RBCS PE=2 SV=1) HSP 1 Score: 246.128 bits (627), Expect = 8.027e-70 Identity = 115/160 (71.88%), Postives = 136/160 (85.00%), Query Frame = 1 Query: 40 MASSMISSATVATANRASLAQASMVAPFTGLKSSSAFPATKKTNNDITSIASNGGRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEISYLIRSGWIPCLEFELEKGWVYREHHRSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRI 519 MASS++S+ATVAT A+ AQASM+A F GLKS+++FP T+K + DITSIASNGGRV+CM VWPP KK+ETLSYLP LSDE LLKEI YL++ GW+PCLEFE E G+VYREHHRSPGYYDGRYWTMWKLPM+GCTDATQVL EV E +K YP +++RI Sbjct: 1 MASSVMSTATVATG--ANAAQASMIASFNGLKSAASFPVTRKQDLDITSIASNGGRVECMLVWPPINKKKYETLSYLPDLSDEQLLKEIEYLLQKGWVPCLEFETEHGFVYREHHRSPGYYDGRYWTMWKLPMFGCTDATQVLNEVQEAKKAYPQAWIRI 158 HSP 2 Score: 37.7354 bits (86), Expect = 8.027e-70 Identity = 17/19 (89.47%), Postives = 17/19 (89.47%), Query Frame = 2 Query: 521 IGFDNKRQVQCISFIAAKP 577 IGFDN RQVQCISFIA KP Sbjct: 159 IGFDNVRQVQCISFIAYKP 177
BLAST of CX296506 vs. ExPASy Swiss-Prot
Match: RBS1_AMAHP (Ribulose bisphosphate carboxylase small chain 1, chloroplastic OS=Amaranthus hypochondriacus GN=RBCS1 PE=2 SV=1) HSP 1 Score: 241.891 bits (616), Expect = 8.028e-70 Identity = 111/160 (69.38%), Postives = 130/160 (81.25%), Query Frame = 1 Query: 40 MASSMISSATVATANRASLAQASMVAPFTGLKSSSAFPATKKTNNDITSIASNGGRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEISYLIRSGWIPCLEFELEKGWVYREHHRSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRI 519 MASSM+S+A +AT + AQASMVAPF GLKS + FP TKK++ND +S+ SNGGRVQCM+VWPP G KKFETLSYLPPLSD LL ++ YL+ GWIPC+EFELE +VYRE+HRSPGY DGRYWTMWKLPMYGCTD QVL EV E +K YP +F+RI Sbjct: 1 MASSMLSNAAMATTAATAGAQASMVAPFNGLKSFATFPITKKSSNDFSSLPSNGGRVQCMQVWPPVGKKKFETLSYLPPLSDAQLLAQVQYLLNKGWIPCIEFELEHPFVYRENHRSPGYQDGRYWTMWKLPMYGCTDPAQVLNEVEEAKKAYPSAFIRI 160 HSP 2 Score: 41.9726 bits (97), Expect = 8.028e-70 Identity = 18/21 (85.71%), Postives = 19/21 (90.48%), Query Frame = 2 Query: 521 IGFDNKRQVQCISFIAAKPPG 583 IGFDNKRQVQC+SFIA KP G Sbjct: 161 IGFDNKRQVQCVSFIAYKPAG 181
BLAST of CX296506 vs. ExPASy Swiss-Prot
Match: RBS1_SOLTU (Ribulose bisphosphate carboxylase small chain 1, chloroplastic OS=Solanum tuberosum GN=RBCS-1 PE=3 SV=1) HSP 1 Score: 243.817 bits (621), Expect = 1.047e-69 Identity = 113/161 (70.19%), Postives = 139/161 (86.34%), Query Frame = 1 Query: 40 MASSMISSATVATANRASLAQA-SMVAPFTGLKSSSAFPATKKTNNDITSIASNGGRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEISYLIRSGWIPCLEFELEKGWVYREHHRSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRI 519 MASS+ISSA VAT R ++ QA SM+APFTGLKS++ FP ++K N DITSIASNGGRV+CM+VWPP +KK+ETLSYLP L+DE LLKE+ YL+++GW+PCLEFE E G+VYRE+H+SPGYYDGRYWTMWKLPM+GCTDATQVL EV E +K YP +++RI Sbjct: 1 MASSVISSAAVAT--RTNVTQAGSMIAPFTGLKSAATFPVSRKQNLDITSIASNGGRVRCMQVWPPINMKKYETLSYLPDLTDEQLLKEVEYLLKNGWVPCLEFETEHGFVYRENHKSPGYYDGRYWTMWKLPMFGCTDATQVLAEVQECKKSYPQAWIRI 159 HSP 2 Score: 39.6614 bits (91), Expect = 1.047e-69 Identity = 18/21 (85.71%), Postives = 18/21 (85.71%), Query Frame = 2 Query: 521 IGFDNKRQVQCISFIAAKPPG 583 IGFDN RQVQCISFIA KP G Sbjct: 160 IGFDNVRQVQCISFIAYKPEG 180
BLAST of CX296506 vs. ExPASy Swiss-Prot
Match: RBS_TOBAC (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Nicotiana tabacum GN=RBCS PE=1 SV=1) HSP 1 Score: 243.432 bits (620), Expect = 1.366e-69 Identity = 112/160 (70.00%), Postives = 139/160 (86.88%), Query Frame = 1 Query: 40 MASSMISSATVATANRASLAQASMVAPFTGLKSSSAFPATKKTNNDITSIASNGGRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEISYLIRSGWIPCLEFELEKGWVYREHHRSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRI 519 MASS++SSA VAT R+++AQA+MVAPFTGLKS+++FP ++K N DITSIASNGGRVQCM+VWPP KK+ETLSYLP LS E LL E+ YL+++GW+PCLEFE E G+VYRE+++SPGYYDGRYWTMWKLPM+GCTDATQVL EV E +K YP +++RI Sbjct: 1 MASSVLSSAAVAT--RSNVAQANMVAPFTGLKSAASFPVSRKQNLDITSIASNGGRVQCMQVWPPINKKKYETLSYLPDLSQEQLLSEVEYLLKNGWVPCLEFETEHGFVYRENNKSPGYYDGRYWTMWKLPMFGCTDATQVLAEVEEAKKAYPQAWIRI 158 HSP 2 Score: 39.6614 bits (91), Expect = 1.366e-69 Identity = 18/21 (85.71%), Postives = 18/21 (85.71%), Query Frame = 2 Query: 521 IGFDNKRQVQCISFIAAKPPG 583 IGFDN RQVQCISFIA KP G Sbjct: 159 IGFDNVRQVQCISFIAYKPEG 179
BLAST of CX296506 vs. ExPASy Swiss-Prot
Match: RBS1_NICSY (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Nicotiana sylvestris GN=RBCS PE=2 SV=1) HSP 1 Score: 243.432 bits (620), Expect = 1.366e-69 Identity = 112/160 (70.00%), Postives = 139/160 (86.88%), Query Frame = 1 Query: 40 MASSMISSATVATANRASLAQASMVAPFTGLKSSSAFPATKKTNNDITSIASNGGRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEISYLIRSGWIPCLEFELEKGWVYREHHRSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRI 519 MASS++SSA VAT R+++AQA+MVAPFTGLKS+++FP ++K N DITSIASNGGRVQCM+VWPP KK+ETLSYLP LS E LL E+ YL+++GW+PCLEFE E G+VYRE+++SPGYYDGRYWTMWKLPM+GCTDATQVL EV E +K YP +++RI Sbjct: 1 MASSVLSSAAVAT--RSNVAQANMVAPFTGLKSAASFPVSRKQNLDITSIASNGGRVQCMQVWPPINKKKYETLSYLPDLSQEQLLSEVEYLLKNGWVPCLEFETEHGFVYRENNKSPGYYDGRYWTMWKLPMFGCTDATQVLAEVEEAKKAYPQAWIRI 158 HSP 2 Score: 39.6614 bits (91), Expect = 1.366e-69 Identity = 18/21 (85.71%), Postives = 18/21 (85.71%), Query Frame = 2 Query: 521 IGFDNKRQVQCISFIAAKPPG 583 IGFDN RQVQCISFIA KP G Sbjct: 159 IGFDNVRQVQCISFIAYKPEG 179
BLAST of CX296506 vs. ExPASy Swiss-Prot
Match: RBS6_MESCR (Ribulose bisphosphate carboxylase small chain 6, chloroplastic OS=Mesembryanthemum crystallinum GN=RBCS-6 PE=3 SV=1) HSP 1 Score: 244.973 bits (624), Expect = 2.322e-69 Identity = 111/162 (68.52%), Postives = 140/162 (86.42%), Query Frame = 1 Query: 40 MASSMISSATVAT--ANRASLAQASMVAPFTGLKSSSAFPATKKTNNDITSIASNGGRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEISYLIRSGWIPCLEFELEKGWVYREHHRSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRI 519 MASSM+S+A VAT A+R++ AQASMVAPFTGLKS SAFP T+K++ND++++ SNGG+VQCM+VWPP G KKFETLSYLPPLS+E+LLKE+ YL+ +GW+PCLEFE G+VYREH +PGYYDGRYWTMWKLPM+GCTD +QV+ E+ E +K YP +F+RI Sbjct: 1 MASSMLSNAAVATTAASRSAGAQASMVAPFTGLKSVSAFPVTRKSSNDLSTVPSNGGKVQCMQVWPPLGKKKFETLSYLPPLSEESLLKEVQYLLNNGWVPCLEFEPTHGFVYREHGNTPGYYDGRYWTMWKLPMFGCTDPSQVVAELEEAKKAYPEAFIRI 162 HSP 2 Score: 37.3502 bits (85), Expect = 2.322e-69 Identity = 16/19 (84.21%), Postives = 17/19 (89.47%), Query Frame = 2 Query: 521 IGFDNKRQVQCISFIAAKP 577 IGFDN RQVQC+SFIA KP Sbjct: 163 IGFDNVRQVQCVSFIAYKP 181 The following BLAST results are available for this feature:
BLAST of CX296506 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 120
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Sequences
The
following sequences are available for this feature:
EST sequence >CX296506 ID=CX296506; Name=CX296506; organism=Citrus clementina; type=EST; length=709bpback to top |