CX296506

Overview
NameCX296506
Unique NameCX296506
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length709
Libraries
Library NameType
FerrChloL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig9879 contig Ccv1_Contig9879:1..708. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX296506 vs. ExPASy Swiss-Prot
Match: RBS_MUSAC (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Musa acuminata GN=RBCS1 PE=2 SV=1)

HSP 1 Score: 241.121 bits (614), Expect = 3.950e-69
Identity = 115/160 (71.88%), Postives = 136/160 (85.00%), Query Frame = 1
Query:   40 MASSMISSATVATANRASLAQASMVAPFTGLKSSSAFPATKKTNNDITSIASNGGRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEISYLIRSGWIPCLEFELEKGWVYREHHRSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRI 519
            ++S M+SSA  AT  RAS AQ+SMVAPFTGLKS+SAFP T+K N D++ + SNGGRVQCMKVWP  G+KKFETLSYLP + DEAL+K+I YL+RS WIPCLEF   KG+V+RE+HRSPGYYDGRYWTMWKLPM+GCTDA QV KEV E +KEYPH+F+RI
Sbjct:    2 VSSMMVSSA--ATFTRASPAQSSMVAPFTGLKSASAFPVTRKPNADLSHLPSNGGRVQCMKVWPIEGVKKFETLSYLPTMKDEALVKQIEYLLRSKWIPCLEF-CPKGFVWRENHRSPGYYDGRYWTMWKLPMFGCTDAVQVAKEVEECKKEYPHAFIRI 158          

HSP 2 Score: 40.4318 bits (93), Expect = 3.950e-69
Identity = 18/21 (85.71%), Postives = 18/21 (85.71%), Query Frame = 2
Query:  521 IGFDNKRQVQCISFIAAKPPG 583
            IGFDN RQVQCISFIA KP G
Sbjct:  159 IGFDNNRQVQCISFIAYKPTG 179          
BLAST of CX296506 vs. ExPASy Swiss-Prot
Match: RBS3_AMAHP (Ribulose bisphosphate carboxylase small chain 3, chloroplastic OS=Amaranthus hypochondriacus GN=RBCS3 PE=2 SV=1)

HSP 1 Score: 236.498 bits (602), Expect = 3.950e-69
Identity = 113/160 (70.62%), Postives = 132/160 (82.50%), Query Frame = 1
Query:   40 MASSMISSATVATANRASLAQASMVAPFTGLKSSSAFPATKKTNNDITSIASNGGRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEISYLIRSGWIPCLEFELEKGWVYREHHRSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRI 519
            MASS++S+A  A    AS AQA+MVAPF GLKS ++FP T+K+N DITSIASNGGRVQCM+VWPP G KKFETLSYLPPLSD  LL ++ YL+ +GWIPC+EFELE  +VYRE+HRSPGY DGRYWTMWKLPMYGCTD  QVL EV E +K YP +F+RI
Sbjct:    1 MASSLMSNAITAVVG-ASGAQANMVAPFNGLKSIASFPVTRKSN-DITSIASNGGRVQCMQVWPPVGKKKFETLSYLPPLSDAQLLAQVQYLLNNGWIPCIEFELEHPFVYRENHRSPGYQDGRYWTMWKLPMYGCTDPAQVLNEVEEAKKAYPSAFIRI 158          

HSP 2 Score: 45.0542 bits (105), Expect = 3.950e-69
Identity = 19/21 (90.48%), Postives = 20/21 (95.24%), Query Frame = 2
Query:  521 IGFDNKRQVQCISFIAAKPPG 583
            IGFDNKRQVQC+SFIA KPPG
Sbjct:  159 IGFDNKRQVQCVSFIAFKPPG 179          
BLAST of CX296506 vs. ExPASy Swiss-Prot
Match: RBS_STELP (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Stellaria longipes GN=RBCS PE=2 SV=1)

HSP 1 Score: 242.276 bits (617), Expect = 1.142e-68
Identity = 114/160 (71.25%), Postives = 136/160 (85.00%), Query Frame = 1
Query:   40 MASSMISSATVATANRASLAQASMVAPFTGLKSSSAFPATKKTNNDITSIASNGGRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEISYLIRSGWIPCLEFELEKGWVYREHHRSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRI 519
            MASS++SSA VAT  R++ AQASMVAPFTGLKS+++FP ++KTN DITSIASNGGRV+CM+VWPP  +KK+ETLSYLP LS E LL EI YL+++GW+PCLEFE E G+VYREH  SPGYYDGRYWTMWKLPM+GCTDATQV  EV E +K YP + +RI
Sbjct:    1 MASSIMSSAAVAT--RSNGAQASMVAPFTGLKSNASFPVSRKTNLDITSIASNGGRVRCMQVWPPINMKKYETLSYLPDLSSEQLLSEIEYLLKNGWVPCLEFETEHGFVYREHTSSPGYYDGRYWTMWKLPMFGCTDATQVAAEVQEAKKAYPDAHIRI 158          

HSP 2 Score: 37.7354 bits (86), Expect = 1.142e-68
Identity = 17/19 (89.47%), Postives = 17/19 (89.47%), Query Frame = 2
Query:  521 IGFDNKRQVQCISFIAAKP 577
            IGFDN RQVQCISFIA KP
Sbjct:  159 IGFDNVRQVQCISFIAYKP 177          
BLAST of CX296506 vs. ExPASy Swiss-Prot
Match: RBS4_MESCR (Ribulose bisphosphate carboxylase small chain 4, chloroplastic OS=Mesembryanthemum crystallinum GN=RBCS-4 PE=2 SV=1)

HSP 1 Score: 242.276 bits (617), Expect = 1.490e-68
Identity = 110/160 (68.75%), Postives = 134/160 (83.75%), Query Frame = 1
Query:   40 MASSMISSATVATANRASLAQASMVAPFTGLKSSSAFPATKKTNNDITSIASNGGRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEISYLIRSGWIPCLEFELEKGWVYREHHRSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRI 519
            MASS++S+A    A   + AQA+MVAPF GLKS SAFP T+K NNDITS+ASNGGRVQCM+VWPP G+KKFETLSYLPPLS+E+LLKE+ YL+ +GW+PCLEFE   G+VYREH  +PGYYDGRYWTMWKLPM+GCTD +QV+ E+ E +K YP +F+RI
Sbjct:    1 MASSLMSNAATTMAAATTTAQANMVAPFNGLKSISAFPVTRK-NNDITSVASNGGRVQCMQVWPPLGMKKFETLSYLPPLSEESLLKEVQYLLNNGWVPCLEFEPTHGFVYREHGNTPGYYDGRYWTMWKLPMFGCTDPSQVVAELEEAKKAYPEAFIRI 159          

HSP 2 Score: 37.3502 bits (85), Expect = 1.490e-68
Identity = 16/19 (84.21%), Postives = 17/19 (89.47%), Query Frame = 2
Query:  521 IGFDNKRQVQCISFIAAKP 577
            IGFDN RQVQC+SFIA KP
Sbjct:  160 IGFDNVRQVQCVSFIAYKP 178          
BLAST of CX296506 vs. ExPASy Swiss-Prot
Match: RBS3_MESCR (Ribulose bisphosphate carboxylase small chain 3, chloroplastic OS=Mesembryanthemum crystallinum GN=RBCS-3 PE=2 SV=1)

HSP 1 Score: 239.965 bits (611), Expect = 5.618e-68
Identity = 109/160 (68.12%), Postives = 133/160 (83.12%), Query Frame = 1
Query:   40 MASSMISSATVATANRASLAQASMVAPFTGLKSSSAFPATKKTNNDITSIASNGGRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEISYLIRSGWIPCLEFELEKGWVYREHHRSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRI 519
            MASS++S+A    A   + AQA+MVAPF GLKS SAFP T+K NNDITS+ASNGGRVQCM+VWPP G KKFETLSYLPPLS+E+L+KE+ YL+ +GW+PCLEFE   G+VYREH  +PGYYDGRYWTMWKLPM+GCTD +QV+ E+ E +K YP +F+RI
Sbjct:    1 MASSLMSNAATTMAAATTTAQANMVAPFNGLKSVSAFPVTRK-NNDITSVASNGGRVQCMQVWPPLGKKKFETLSYLPPLSEESLMKEVQYLLNNGWVPCLEFEPTHGFVYREHGNTPGYYDGRYWTMWKLPMFGCTDPSQVVAELEEAKKAYPEAFIRI 159          

HSP 2 Score: 37.7354 bits (86), Expect = 5.618e-68
Identity = 17/19 (89.47%), Postives = 17/19 (89.47%), Query Frame = 2
Query:  521 IGFDNKRQVQCISFIAAKP 577
            IGFDN RQVQCISFIA KP
Sbjct:  160 IGFDNVRQVQCISFIAYKP 178          
BLAST of CX296506 vs. ExPASy Swiss-Prot
Match: RBS2_SPIOL (Ribulose bisphosphate carboxylase small chain 2, chloroplastic OS=Spinacia oleracea GN=RBCS2 PE=1 SV=1)

HSP 1 Score: 239.195 bits (609), Expect = 7.327e-68
Identity = 110/160 (68.75%), Postives = 135/160 (84.38%), Query Frame = 1
Query:   40 MASSMISSATVATANRASLAQASMVAPFTGLKSSSAFPATKKTNNDITSIASNGGRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEISYLIRSGWIPCLEFELEKGWVYREHHRSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRI 519
            MASS++SSA VAT +R   AQASMVAPFTGLKS+  FPATKK N+DITS+ASNGGRVQCMKVWP   +K++ETLSYLPPL+ + L +++ YL+ + W+PCLEFE + G+VYREHH SPGYYDGRYWTMWKLPM+GCTD  QVL E+ E +KEYP++F+RI
Sbjct:    1 MASSVLSSAAVATVSRTP-AQASMVAPFTGLKSTVGFPATKK-NDDITSLASNGGRVQCMKVWPTQNMKRYETLSYLPPLTTDQLARQVDYLLNNKWVPCLEFETDHGFVYREHHNSPGYYDGRYWTMWKLPMFGCTDPAQVLNELEECKKEYPNAFIRI 158          

HSP 2 Score: 38.1206 bits (87), Expect = 7.327e-68
Identity = 16/21 (76.19%), Postives = 18/21 (85.71%), Query Frame = 2
Query:  521 IGFDNKRQVQCISFIAAKPPG 583
            IGFD+ RQVQC+SFIA KP G
Sbjct:  159 IGFDSNRQVQCVSFIAYKPAG 179          
BLAST of CX296506 vs. ExPASy Swiss-Prot
Match: RBS2_AMAHP (Ribulose bisphosphate carboxylase small chain 2, chloroplastic OS=Amaranthus hypochondriacus GN=RBCS2 PE=2 SV=1)

HSP 1 Score: 236.498 bits (602), Expect = 1.246e-67
Identity = 114/162 (70.37%), Postives = 132/162 (81.48%), Query Frame = 1
Query:   40 MASSMISSATVATANRASL--AQASMVAPFTGLKSSSAFPATKKTNNDITSIASNGGRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEISYLIRSGWIPCLEFELEKGWVYREHHRSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRI 519
            MASSM+S+A  A A  A+   AQA+MVAPF GLKS ++FP T+K+N DITSIASNGGRVQCM+VWPP G KKFETLSYLPPLSD  LL ++ YL+  GWIPC+EFELE  +VYRE+HRSPGY DGRYWTMWKLPMYGCTD  QVL EV E +K YP +F+RI
Sbjct:    1 MASSMMSNAATAVAVAATSGGAQANMVAPFNGLKSIASFPVTRKSN-DITSIASNGGRVQCMQVWPPVGKKKFETLSYLPPLSDAQLLAQVQYLLNKGWIPCIEFELEHPFVYRENHRSPGYQDGRYWTMWKLPMYGCTDPAQVLNEVEEAKKAYPTAFIRI 161          

HSP 2 Score: 40.0466 bits (92), Expect = 1.246e-67
Identity = 17/19 (89.47%), Postives = 18/19 (94.74%), Query Frame = 2
Query:  521 IGFDNKRQVQCISFIAAKP 577
            IGFDNKRQVQC+SFIA KP
Sbjct:  162 IGFDNKRQVQCVSFIAYKP 180          
BLAST of CX296506 vs. ExPASy Swiss-Prot
Match: RBS3_PEA (Ribulose bisphosphate carboxylase small chain 3A, chloroplastic OS=Pisum sativum GN=RBCS-3A PE=3 SV=1)

HSP 1 Score: 240.736 bits (613), Expect = 1.625e-67
Identity = 112/158 (70.89%), Postives = 132/158 (83.54%), Query Frame = 1
Query:   46 SSMISSATVATANRASLAQASMVAPFTGLKSSSAFPATKKTNNDITSIASNGGRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEISYLIRSGWIPCLEFELEKGWVYREHHRSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRI 519
            +SMISS+ V T +RAS  Q++ VAPF GLKS + FP  KK N DITSI SNGGRV+CM+VWPP G KKFETLSYLPPL+ + LLKE+ YL+R GW+PCLEFELEKG+VYREH++SPGYYDGRYWTMWKLPM+G TDA+QVLKE+ EV   YP +FVRI
Sbjct:    2 ASMISSSAVTTVSRASTVQSAAVAPFGGLKSMTGFPV-KKVNTDITSITSNGGRVKCMQVWPPIGKKKFETLSYLPPLTRDQLLKEVEYLLRKGWVPCLEFELEKGFVYREHNKSPGYYDGRYWTMWKLPMFGTTDASQVLKELDEVVAAYPQAFVRI 158          

HSP 2 Score: 35.4242 bits (80), Expect = 1.625e-67
Identity = 16/19 (84.21%), Postives = 16/19 (84.21%), Query Frame = 2
Query:  521 IGFDNKRQVQCISFIAAKP 577
            IGFDN RQVQCISFIA  P
Sbjct:  159 IGFDNVRQVQCISFIAHTP 177          
BLAST of CX296506 vs. ExPASy Swiss-Prot
Match: RBS2_NICSY (Ribulose bisphosphate carboxylase small chain S41, chloroplastic OS=Nicotiana sylvestris PE=3 SV=1)

HSP 1 Score: 236.498 bits (602), Expect = 1.625e-67
Identity = 108/156 (69.23%), Postives = 133/156 (85.26%), Query Frame = 1
Query:   52 MISSATVATANRASLAQASMVAPFTGLKSSSAFPATKKTNNDITSIASNGGRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEISYLIRSGWIPCLEFELEKGWVYREHHRSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRI 519
            M S+A VAT   A  AQASM+APFTGLKS+++FP ++K N DITSIASNGGRVQCM+VWPP   KK+ETLSYLP LS+E LL+E+ YL+++GW+PCLEFE E G+VYRE+++SPGYYDGRYWTMWKLPM+GCTDATQVL EV E +K YP +++RI
Sbjct:    6 MSSAAAVATGTNA--AQASMIAPFTGLKSATSFPVSRKQNLDITSIASNGGRVQCMQVWPPINKKKYETLSYLPDLSEEQLLREVEYLLKNGWVPCLEFETEHGFVYRENNKSPGYYDGRYWTMWKLPMFGCTDATQVLAEVEEAKKAYPQAWIRI 159          

HSP 2 Score: 39.6614 bits (91), Expect = 1.625e-67
Identity = 18/21 (85.71%), Postives = 18/21 (85.71%), Query Frame = 2
Query:  521 IGFDNKRQVQCISFIAAKPPG 583
            IGFDN RQVQCISFIA KP G
Sbjct:  160 IGFDNVRQVQCISFIAYKPEG 180          
BLAST of CX296506 vs. ExPASy Swiss-Prot
Match: RBS4_FLAPR (Ribulose bisphosphate carboxylase small chain 4, chloroplastic OS=Flaveria pringlei GN=RBCS4 PE=2 SV=1)

HSP 1 Score: 235.343 bits (599), Expect = 1.625e-67
Identity = 107/153 (69.93%), Postives = 133/153 (86.93%), Query Frame = 1
Query:   61 SATVATANRASLAQASMVAPFTGLKSSSAFPATKKTNNDITSIASNGGRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEISYLIRSGWIPCLEFELEKGWVYREHHRSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRI 519
            S+TVAT +RA+ AQA+MVAPFTGLKS++AFPATKK N D +++ SNGGRVQCMKVWPP G KK+ETLSYLP L++  L KE+ YL+R+ W+PCLEFELE G+VYRE+ RSPGYYDGRYWTMWKLPM+GCTD+ QV+KE+ E +KEYP +++RI
Sbjct:    5 SSTVATVSRAAPAQANMVAPFTGLKSNAAFPATKKAN-DFSTLPSNGGRVQCMKVWPPLGKKKYETLSYLPNLTEAQLAKEVDYLLRNKWVPCLEFELEHGFVYRENARSPGYYDGRYWTMWKLPMFGCTDSAQVMKELQECKKEYPQAWIRI 156          

HSP 2 Score: 40.817 bits (94), Expect = 1.625e-67
Identity = 18/21 (85.71%), Postives = 19/21 (90.48%), Query Frame = 2
Query:  521 IGFDNKRQVQCISFIAAKPPG 583
            IGFDN RQVQCISFIA+KP G
Sbjct:  157 IGFDNVRQVQCISFIASKPDG 177          
The following BLAST results are available for this feature:
BLAST of CX296506 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 120
Match NameE-valueIdentityDescription
RBS_MUSAC3.950e-6971.88Ribulose bisphosphate carboxylase small chain, chl... [more]
RBS3_AMAHP3.950e-6970.63Ribulose bisphosphate carboxylase small chain 3, c... [more]
RBS_STELP1.142e-6871.25Ribulose bisphosphate carboxylase small chain, chl... [more]
RBS4_MESCR1.490e-6868.75Ribulose bisphosphate carboxylase small chain 4, c... [more]
RBS3_MESCR5.618e-6868.13Ribulose bisphosphate carboxylase small chain 3, c... [more]
RBS2_SPIOL7.327e-6868.75Ribulose bisphosphate carboxylase small chain 2, c... [more]
RBS2_AMAHP1.246e-6770.37Ribulose bisphosphate carboxylase small chain 2, c... [more]
RBS3_PEA1.625e-6770.89Ribulose bisphosphate carboxylase small chain 3A, ... [more]
RBS2_NICSY1.625e-6769.23Ribulose bisphosphate carboxylase small chain S41,... [more]
RBS4_FLAPR1.625e-6769.93Ribulose bisphosphate carboxylase small chain 4, c... [more]

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Properties
Property NameValue
Genbank descriptionC05142A05SK FerrChloL1 Citrus clementina cDNA clone C05142A05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX296506 ID=CX296506; Name=CX296506; organism=Citrus clementina; type=EST; length=709bp
GAGGCCTCGTGCCGAATTCGGCACGAGGAGCAAGTACCAATGGCTTCCTC
AATGATCTCATCGGCCACCGTTGCCACCGCGAACCGCGCCAGCCTTGCTC
AGGCCAGCATGGTCGCCCCCTTCACCGGCCTCAAGTCTTCTTCTGCTTTC
CCAGCAACCAAGAAGACCAACAATGACATTACTTCCATTGCAAGCAACGG
CGGAAGAGTCCAATGCATGAAGGTGTGGCCACCAACTGGCTTGAAGAAGT
TCGAGACTCTCTCATACCTCCCGCCACTGTCCGATGAAGCTTTGCTCAAG
GAAATCAGTTACCTTATCCGCTCCGGCTGGATTCCCTGCTTGGAATTCGA
GTTGGAGAAAGGATGGGTGTACCGTGAGCACCACAGGTCACCAGGATACT
ACGATGGACGCTACTGGACAATGTGGAAGCTGCCCATGTATGGGTGCACA
GATGCAACCCAGGTTTTGAAGGAGGTTGGGGAGGTCCAGAAGGAATACCC
ACATTCATTCGTCCGAATTTATCGGATTTGACAACAAGCGTCAAGTGCAG
TGCATCAGTTTCATTGCTGCCAAGCCACCAGGCGTCTAGGTTCCCAATTA
AATTTGTGTAACCACCCATGCAATATTGTTGATTATTATTATGTGTAACC
CCCATAATGATCATTCGATCAATGGGGGTTCGGTTTGCGTTTAATTTGTA
CTTAGGCTG
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