CX296506
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CX296506 vs. ExPASy Swiss-Prot
Match: RBS_MUSAC (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Musa acuminata GN=RBCS1 PE=2 SV=1) HSP 1 Score: 241.121 bits (614), Expect = 3.950e-69 Identity = 115/160 (71.88%), Postives = 136/160 (85.00%), Query Frame = 1 Query: 40 MASSMISSATVATANRASLAQASMVAPFTGLKSSSAFPATKKTNNDITSIASNGGRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEISYLIRSGWIPCLEFELEKGWVYREHHRSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRI 519 ++S M+SSA AT RAS AQ+SMVAPFTGLKS+SAFP T+K N D++ + SNGGRVQCMKVWP G+KKFETLSYLP + DEAL+K+I YL+RS WIPCLEF KG+V+RE+HRSPGYYDGRYWTMWKLPM+GCTDA QV KEV E +KEYPH+F+RI Sbjct: 2 VSSMMVSSA--ATFTRASPAQSSMVAPFTGLKSASAFPVTRKPNADLSHLPSNGGRVQCMKVWPIEGVKKFETLSYLPTMKDEALVKQIEYLLRSKWIPCLEF-CPKGFVWRENHRSPGYYDGRYWTMWKLPMFGCTDAVQVAKEVEECKKEYPHAFIRI 158 HSP 2 Score: 40.4318 bits (93), Expect = 3.950e-69 Identity = 18/21 (85.71%), Postives = 18/21 (85.71%), Query Frame = 2 Query: 521 IGFDNKRQVQCISFIAAKPPG 583 IGFDN RQVQCISFIA KP G Sbjct: 159 IGFDNNRQVQCISFIAYKPTG 179
BLAST of CX296506 vs. ExPASy Swiss-Prot
Match: RBS3_AMAHP (Ribulose bisphosphate carboxylase small chain 3, chloroplastic OS=Amaranthus hypochondriacus GN=RBCS3 PE=2 SV=1) HSP 1 Score: 236.498 bits (602), Expect = 3.950e-69 Identity = 113/160 (70.62%), Postives = 132/160 (82.50%), Query Frame = 1 Query: 40 MASSMISSATVATANRASLAQASMVAPFTGLKSSSAFPATKKTNNDITSIASNGGRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEISYLIRSGWIPCLEFELEKGWVYREHHRSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRI 519 MASS++S+A A AS AQA+MVAPF GLKS ++FP T+K+N DITSIASNGGRVQCM+VWPP G KKFETLSYLPPLSD LL ++ YL+ +GWIPC+EFELE +VYRE+HRSPGY DGRYWTMWKLPMYGCTD QVL EV E +K YP +F+RI Sbjct: 1 MASSLMSNAITAVVG-ASGAQANMVAPFNGLKSIASFPVTRKSN-DITSIASNGGRVQCMQVWPPVGKKKFETLSYLPPLSDAQLLAQVQYLLNNGWIPCIEFELEHPFVYRENHRSPGYQDGRYWTMWKLPMYGCTDPAQVLNEVEEAKKAYPSAFIRI 158 HSP 2 Score: 45.0542 bits (105), Expect = 3.950e-69 Identity = 19/21 (90.48%), Postives = 20/21 (95.24%), Query Frame = 2 Query: 521 IGFDNKRQVQCISFIAAKPPG 583 IGFDNKRQVQC+SFIA KPPG Sbjct: 159 IGFDNKRQVQCVSFIAFKPPG 179
BLAST of CX296506 vs. ExPASy Swiss-Prot
Match: RBS_STELP (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Stellaria longipes GN=RBCS PE=2 SV=1) HSP 1 Score: 242.276 bits (617), Expect = 1.142e-68 Identity = 114/160 (71.25%), Postives = 136/160 (85.00%), Query Frame = 1 Query: 40 MASSMISSATVATANRASLAQASMVAPFTGLKSSSAFPATKKTNNDITSIASNGGRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEISYLIRSGWIPCLEFELEKGWVYREHHRSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRI 519 MASS++SSA VAT R++ AQASMVAPFTGLKS+++FP ++KTN DITSIASNGGRV+CM+VWPP +KK+ETLSYLP LS E LL EI YL+++GW+PCLEFE E G+VYREH SPGYYDGRYWTMWKLPM+GCTDATQV EV E +K YP + +RI Sbjct: 1 MASSIMSSAAVAT--RSNGAQASMVAPFTGLKSNASFPVSRKTNLDITSIASNGGRVRCMQVWPPINMKKYETLSYLPDLSSEQLLSEIEYLLKNGWVPCLEFETEHGFVYREHTSSPGYYDGRYWTMWKLPMFGCTDATQVAAEVQEAKKAYPDAHIRI 158 HSP 2 Score: 37.7354 bits (86), Expect = 1.142e-68 Identity = 17/19 (89.47%), Postives = 17/19 (89.47%), Query Frame = 2 Query: 521 IGFDNKRQVQCISFIAAKP 577 IGFDN RQVQCISFIA KP Sbjct: 159 IGFDNVRQVQCISFIAYKP 177
BLAST of CX296506 vs. ExPASy Swiss-Prot
Match: RBS4_MESCR (Ribulose bisphosphate carboxylase small chain 4, chloroplastic OS=Mesembryanthemum crystallinum GN=RBCS-4 PE=2 SV=1) HSP 1 Score: 242.276 bits (617), Expect = 1.490e-68 Identity = 110/160 (68.75%), Postives = 134/160 (83.75%), Query Frame = 1 Query: 40 MASSMISSATVATANRASLAQASMVAPFTGLKSSSAFPATKKTNNDITSIASNGGRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEISYLIRSGWIPCLEFELEKGWVYREHHRSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRI 519 MASS++S+A A + AQA+MVAPF GLKS SAFP T+K NNDITS+ASNGGRVQCM+VWPP G+KKFETLSYLPPLS+E+LLKE+ YL+ +GW+PCLEFE G+VYREH +PGYYDGRYWTMWKLPM+GCTD +QV+ E+ E +K YP +F+RI Sbjct: 1 MASSLMSNAATTMAAATTTAQANMVAPFNGLKSISAFPVTRK-NNDITSVASNGGRVQCMQVWPPLGMKKFETLSYLPPLSEESLLKEVQYLLNNGWVPCLEFEPTHGFVYREHGNTPGYYDGRYWTMWKLPMFGCTDPSQVVAELEEAKKAYPEAFIRI 159 HSP 2 Score: 37.3502 bits (85), Expect = 1.490e-68 Identity = 16/19 (84.21%), Postives = 17/19 (89.47%), Query Frame = 2 Query: 521 IGFDNKRQVQCISFIAAKP 577 IGFDN RQVQC+SFIA KP Sbjct: 160 IGFDNVRQVQCVSFIAYKP 178
BLAST of CX296506 vs. ExPASy Swiss-Prot
Match: RBS3_MESCR (Ribulose bisphosphate carboxylase small chain 3, chloroplastic OS=Mesembryanthemum crystallinum GN=RBCS-3 PE=2 SV=1) HSP 1 Score: 239.965 bits (611), Expect = 5.618e-68 Identity = 109/160 (68.12%), Postives = 133/160 (83.12%), Query Frame = 1 Query: 40 MASSMISSATVATANRASLAQASMVAPFTGLKSSSAFPATKKTNNDITSIASNGGRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEISYLIRSGWIPCLEFELEKGWVYREHHRSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRI 519 MASS++S+A A + AQA+MVAPF GLKS SAFP T+K NNDITS+ASNGGRVQCM+VWPP G KKFETLSYLPPLS+E+L+KE+ YL+ +GW+PCLEFE G+VYREH +PGYYDGRYWTMWKLPM+GCTD +QV+ E+ E +K YP +F+RI Sbjct: 1 MASSLMSNAATTMAAATTTAQANMVAPFNGLKSVSAFPVTRK-NNDITSVASNGGRVQCMQVWPPLGKKKFETLSYLPPLSEESLMKEVQYLLNNGWVPCLEFEPTHGFVYREHGNTPGYYDGRYWTMWKLPMFGCTDPSQVVAELEEAKKAYPEAFIRI 159 HSP 2 Score: 37.7354 bits (86), Expect = 5.618e-68 Identity = 17/19 (89.47%), Postives = 17/19 (89.47%), Query Frame = 2 Query: 521 IGFDNKRQVQCISFIAAKP 577 IGFDN RQVQCISFIA KP Sbjct: 160 IGFDNVRQVQCISFIAYKP 178
BLAST of CX296506 vs. ExPASy Swiss-Prot
Match: RBS2_SPIOL (Ribulose bisphosphate carboxylase small chain 2, chloroplastic OS=Spinacia oleracea GN=RBCS2 PE=1 SV=1) HSP 1 Score: 239.195 bits (609), Expect = 7.327e-68 Identity = 110/160 (68.75%), Postives = 135/160 (84.38%), Query Frame = 1 Query: 40 MASSMISSATVATANRASLAQASMVAPFTGLKSSSAFPATKKTNNDITSIASNGGRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEISYLIRSGWIPCLEFELEKGWVYREHHRSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRI 519 MASS++SSA VAT +R AQASMVAPFTGLKS+ FPATKK N+DITS+ASNGGRVQCMKVWP +K++ETLSYLPPL+ + L +++ YL+ + W+PCLEFE + G+VYREHH SPGYYDGRYWTMWKLPM+GCTD QVL E+ E +KEYP++F+RI Sbjct: 1 MASSVLSSAAVATVSRTP-AQASMVAPFTGLKSTVGFPATKK-NDDITSLASNGGRVQCMKVWPTQNMKRYETLSYLPPLTTDQLARQVDYLLNNKWVPCLEFETDHGFVYREHHNSPGYYDGRYWTMWKLPMFGCTDPAQVLNELEECKKEYPNAFIRI 158 HSP 2 Score: 38.1206 bits (87), Expect = 7.327e-68 Identity = 16/21 (76.19%), Postives = 18/21 (85.71%), Query Frame = 2 Query: 521 IGFDNKRQVQCISFIAAKPPG 583 IGFD+ RQVQC+SFIA KP G Sbjct: 159 IGFDSNRQVQCVSFIAYKPAG 179
BLAST of CX296506 vs. ExPASy Swiss-Prot
Match: RBS2_AMAHP (Ribulose bisphosphate carboxylase small chain 2, chloroplastic OS=Amaranthus hypochondriacus GN=RBCS2 PE=2 SV=1) HSP 1 Score: 236.498 bits (602), Expect = 1.246e-67 Identity = 114/162 (70.37%), Postives = 132/162 (81.48%), Query Frame = 1 Query: 40 MASSMISSATVATANRASL--AQASMVAPFTGLKSSSAFPATKKTNNDITSIASNGGRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEISYLIRSGWIPCLEFELEKGWVYREHHRSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRI 519 MASSM+S+A A A A+ AQA+MVAPF GLKS ++FP T+K+N DITSIASNGGRVQCM+VWPP G KKFETLSYLPPLSD LL ++ YL+ GWIPC+EFELE +VYRE+HRSPGY DGRYWTMWKLPMYGCTD QVL EV E +K YP +F+RI Sbjct: 1 MASSMMSNAATAVAVAATSGGAQANMVAPFNGLKSIASFPVTRKSN-DITSIASNGGRVQCMQVWPPVGKKKFETLSYLPPLSDAQLLAQVQYLLNKGWIPCIEFELEHPFVYRENHRSPGYQDGRYWTMWKLPMYGCTDPAQVLNEVEEAKKAYPTAFIRI 161 HSP 2 Score: 40.0466 bits (92), Expect = 1.246e-67 Identity = 17/19 (89.47%), Postives = 18/19 (94.74%), Query Frame = 2 Query: 521 IGFDNKRQVQCISFIAAKP 577 IGFDNKRQVQC+SFIA KP Sbjct: 162 IGFDNKRQVQCVSFIAYKP 180
BLAST of CX296506 vs. ExPASy Swiss-Prot
Match: RBS3_PEA (Ribulose bisphosphate carboxylase small chain 3A, chloroplastic OS=Pisum sativum GN=RBCS-3A PE=3 SV=1) HSP 1 Score: 240.736 bits (613), Expect = 1.625e-67 Identity = 112/158 (70.89%), Postives = 132/158 (83.54%), Query Frame = 1 Query: 46 SSMISSATVATANRASLAQASMVAPFTGLKSSSAFPATKKTNNDITSIASNGGRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEISYLIRSGWIPCLEFELEKGWVYREHHRSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRI 519 +SMISS+ V T +RAS Q++ VAPF GLKS + FP KK N DITSI SNGGRV+CM+VWPP G KKFETLSYLPPL+ + LLKE+ YL+R GW+PCLEFELEKG+VYREH++SPGYYDGRYWTMWKLPM+G TDA+QVLKE+ EV YP +FVRI Sbjct: 2 ASMISSSAVTTVSRASTVQSAAVAPFGGLKSMTGFPV-KKVNTDITSITSNGGRVKCMQVWPPIGKKKFETLSYLPPLTRDQLLKEVEYLLRKGWVPCLEFELEKGFVYREHNKSPGYYDGRYWTMWKLPMFGTTDASQVLKELDEVVAAYPQAFVRI 158 HSP 2 Score: 35.4242 bits (80), Expect = 1.625e-67 Identity = 16/19 (84.21%), Postives = 16/19 (84.21%), Query Frame = 2 Query: 521 IGFDNKRQVQCISFIAAKP 577 IGFDN RQVQCISFIA P Sbjct: 159 IGFDNVRQVQCISFIAHTP 177
BLAST of CX296506 vs. ExPASy Swiss-Prot
Match: RBS2_NICSY (Ribulose bisphosphate carboxylase small chain S41, chloroplastic OS=Nicotiana sylvestris PE=3 SV=1) HSP 1 Score: 236.498 bits (602), Expect = 1.625e-67 Identity = 108/156 (69.23%), Postives = 133/156 (85.26%), Query Frame = 1 Query: 52 MISSATVATANRASLAQASMVAPFTGLKSSSAFPATKKTNNDITSIASNGGRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEISYLIRSGWIPCLEFELEKGWVYREHHRSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRI 519 M S+A VAT A AQASM+APFTGLKS+++FP ++K N DITSIASNGGRVQCM+VWPP KK+ETLSYLP LS+E LL+E+ YL+++GW+PCLEFE E G+VYRE+++SPGYYDGRYWTMWKLPM+GCTDATQVL EV E +K YP +++RI Sbjct: 6 MSSAAAVATGTNA--AQASMIAPFTGLKSATSFPVSRKQNLDITSIASNGGRVQCMQVWPPINKKKYETLSYLPDLSEEQLLREVEYLLKNGWVPCLEFETEHGFVYRENNKSPGYYDGRYWTMWKLPMFGCTDATQVLAEVEEAKKAYPQAWIRI 159 HSP 2 Score: 39.6614 bits (91), Expect = 1.625e-67 Identity = 18/21 (85.71%), Postives = 18/21 (85.71%), Query Frame = 2 Query: 521 IGFDNKRQVQCISFIAAKPPG 583 IGFDN RQVQCISFIA KP G Sbjct: 160 IGFDNVRQVQCISFIAYKPEG 180
BLAST of CX296506 vs. ExPASy Swiss-Prot
Match: RBS4_FLAPR (Ribulose bisphosphate carboxylase small chain 4, chloroplastic OS=Flaveria pringlei GN=RBCS4 PE=2 SV=1) HSP 1 Score: 235.343 bits (599), Expect = 1.625e-67 Identity = 107/153 (69.93%), Postives = 133/153 (86.93%), Query Frame = 1 Query: 61 SATVATANRASLAQASMVAPFTGLKSSSAFPATKKTNNDITSIASNGGRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEISYLIRSGWIPCLEFELEKGWVYREHHRSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRI 519 S+TVAT +RA+ AQA+MVAPFTGLKS++AFPATKK N D +++ SNGGRVQCMKVWPP G KK+ETLSYLP L++ L KE+ YL+R+ W+PCLEFELE G+VYRE+ RSPGYYDGRYWTMWKLPM+GCTD+ QV+KE+ E +KEYP +++RI Sbjct: 5 SSTVATVSRAAPAQANMVAPFTGLKSNAAFPATKKAN-DFSTLPSNGGRVQCMKVWPPLGKKKYETLSYLPNLTEAQLAKEVDYLLRNKWVPCLEFELEHGFVYRENARSPGYYDGRYWTMWKLPMFGCTDSAQVMKELQECKKEYPQAWIRI 156 HSP 2 Score: 40.817 bits (94), Expect = 1.625e-67 Identity = 18/21 (85.71%), Postives = 19/21 (90.48%), Query Frame = 2 Query: 521 IGFDNKRQVQCISFIAAKPPG 583 IGFDN RQVQCISFIA+KP G Sbjct: 157 IGFDNVRQVQCISFIASKPDG 177 The following BLAST results are available for this feature:
BLAST of CX296506 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 120
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Sequences
The
following sequences are available for this feature:
EST sequence >CX296506 ID=CX296506; Name=CX296506; organism=Citrus clementina; type=EST; length=709bpback to top |