CX296506
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CX296506 vs. ExPASy Swiss-Prot
Match: RBS2_PEA (Ribulose bisphosphate carboxylase small chain 3C, chloroplastic OS=Pisum sativum GN=RBCS-3C PE=2 SV=1) HSP 1 Score: 240.35 bits (612), Expect = 2.119e-67 Identity = 112/158 (70.89%), Postives = 132/158 (83.54%), Query Frame = 1 Query: 46 SSMISSATVATANRASLAQASMVAPFTGLKSSSAFPATKKTNNDITSIASNGGRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEISYLIRSGWIPCLEFELEKGWVYREHHRSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRI 519 +SMISS+ V T +RAS Q++ VAPF GLKS + FP KK N DITSI SNGGRV+CM+VWPP G KKFETLSYLPPL+ + LLKE+ YL+R GW+PCLEFELEKG+VYREH++SPGYYDGRYWTMWKLPM+G TDA+QVLKE+ EV YP +FVRI Sbjct: 2 ASMISSSAVTTVSRASRGQSAAVAPFGGLKSMTGFPV-KKVNTDITSITSNGGRVKCMQVWPPIGKKKFETLSYLPPLTRDQLLKEVEYLLRKGWVPCLEFELEKGFVYREHNKSPGYYDGRYWTMWKLPMFGTTDASQVLKELDEVVAAYPQAFVRI 158 HSP 2 Score: 35.4242 bits (80), Expect = 2.119e-67 Identity = 16/19 (84.21%), Postives = 16/19 (84.21%), Query Frame = 2 Query: 521 IGFDNKRQVQCISFIAAKP 577 IGFDN RQVQCISFIA P Sbjct: 159 IGFDNVRQVQCISFIAHTP 177
BLAST of CX296506 vs. ExPASy Swiss-Prot
Match: RBS5_MESCR (Ribulose bisphosphate carboxylase small chain 5, chloroplastic OS=Mesembryanthemum crystallinum GN=RBCS-5 PE=3 SV=1) HSP 1 Score: 237.269 bits (604), Expect = 4.699e-67 Identity = 110/160 (68.75%), Postives = 133/160 (83.12%), Query Frame = 1 Query: 40 MASSMISSATVATANRASLAQASMVAPFTGLKSSSAFPATKKTNNDITSIASNGGRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEISYLIRSGWIPCLEFELEKGWVYREHHRSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRI 519 MASS++S+A A + AQA+MVAPF GLKS SAFP T+K NNDITS+ASNGGRVQCM VWPP G+KKFETLSYLPPLS+E+LLKE+ YL+ +GW+PCLEFE G+VYREH +PGYYDGRYWTMWKLPM+GCTD +QV+ E+ E +K YP +F+RI Sbjct: 1 MASSLMSNAATTMAAATTTAQANMVAPFNGLKSISAFPVTRK-NNDITSVASNGGRVQCM-VWPPLGMKKFETLSYLPPLSEESLLKEVQYLLNNGWVPCLEFEPTHGFVYREHGNTPGYYDGRYWTMWKLPMFGCTDPSQVVAELEEAKKAYPEAFIRI 158 HSP 2 Score: 37.3502 bits (85), Expect = 4.699e-67 Identity = 16/19 (84.21%), Postives = 17/19 (89.47%), Query Frame = 2 Query: 521 IGFDNKRQVQCISFIAAKP 577 IGFDN RQVQC+SFIA KP Sbjct: 159 IGFDNVRQVQCVSFIAYKP 177
BLAST of CX296506 vs. ExPASy Swiss-Prot
Match: RBS_HELAN (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Helianthus annuus GN=RBCS PE=2 SV=1) HSP 1 Score: 236.884 bits (603), Expect = 4.699e-67 Identity = 106/153 (69.28%), Postives = 132/153 (86.27%), Query Frame = 1 Query: 61 SATVATANRASLAQASMVAPFTGLKSSSAFPATKKTNNDITSIASNGGRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEISYLIRSGWIPCLEFELEKGWVYREHHRSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRI 519 S++VAT +R + AQA+MVAPFTGLKS++AFP TKK N D +++ SNGGRVQCMKVWPP GLKK+ETLSYLPPL++ L KE+ YL+R W+PCLEFELE G+VYRE+ RSPGYYDGRYWTMWKLPM+GCTD+ QV+KE+ E +KEYP +++RI Sbjct: 5 SSSVATVSRTAPAQANMVAPFTGLKSNAAFPTTKKAN-DFSTLPSNGGRVQCMKVWPPLGLKKYETLSYLPPLTETQLAKEVDYLLRKKWVPCLEFELEHGFVYRENARSPGYYDGRYWTMWKLPMFGCTDSAQVMKELAECKKEYPQAWIRI 156 HSP 2 Score: 37.7354 bits (86), Expect = 4.699e-67 Identity = 16/21 (76.19%), Postives = 18/21 (85.71%), Query Frame = 2 Query: 521 IGFDNKRQVQCISFIAAKPPG 583 IGFDN RQVQCI FIA++P G Sbjct: 157 IGFDNVRQVQCIMFIASRPDG 177
BLAST of CX296506 vs. ExPASy Swiss-Prot
Match: RBS2_MESCR (Ribulose bisphosphate carboxylase small chain 2, chloroplastic OS=Mesembryanthemum crystallinum GN=RBCS-2 PE=2 SV=1) HSP 1 Score: 235.728 bits (600), Expect = 7.990e-67 Identity = 111/158 (70.25%), Postives = 132/158 (83.54%), Query Frame = 1 Query: 46 SSMISSATVATANRASLAQASMVAPFTGLKSSSAFPATKKTNNDITSIASNGGRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEISYLIRSGWIPCLEFELEKGWVYREHHRSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRI 519 +SM+S+A V R + AQASMVAPFTGLKS SAFP TKK+N DITSIASNGGRVQCM+VWPP G KKFETLSYLPPLS+E+L+KE+ YL+ +GW+PCLEFE G+VYREH +PGYYDGRYWTMWKLPM+GCTD +QV+ E+ E +K YP +F RI Sbjct: 2 ASMMSNAAVV--GRTTPAQASMVAPFTGLKSVSAFPVTKKSN-DITSIASNGGRVQCMQVWPPLGKKKFETLSYLPPLSEESLMKEVQYLLNNGWVPCLEFEPTHGFVYREHGNTPGYYDGRYWTMWKLPMFGCTDPSQVVAELEEAKKAYPEAFTRI 156 HSP 2 Score: 38.1206 bits (87), Expect = 7.990e-67 Identity = 17/22 (77.27%), Postives = 18/22 (81.82%), Query Frame = 2 Query: 512 SEFIGFDNKRQVQCISFIAAKP 577 + IGFDN RQVQCISFIA KP Sbjct: 154 TRIIGFDNVRQVQCISFIAYKP 175
BLAST of CX296506 vs. ExPASy Swiss-Prot
Match: RBS_TRIRP (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Trifolium repens GN=RBCS PE=3 SV=1) HSP 1 Score: 237.269 bits (604), Expect = 7.991e-67 Identity = 109/157 (69.43%), Postives = 132/157 (84.08%), Query Frame = 1 Query: 49 SMISSATVATANRASLAQASMVAPFTGLKSSSAFPATKKTNNDITSIASNGGRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEISYLIRSGWIPCLEFELEKGWVYREHHRSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRI 519 ++ISSA V T NRA + QA++ PFTGLKSS+ FP TKK NNDITSI SNG RV CM+VWPP G KKFETLSYLPPL+DE LLKE+ YL+R GW+PC+EFELEKG+V+R+++ SPGYYDGRYWTMW+LP++G TDA QVLKEV E + EYP +F+RI Sbjct: 2 ALISSAAVTTINRAPV-QANLATPFTGLKSSAGFPVTKK-NNDITSITSNGSRVNCMQVWPPVGKKKFETLSYLPPLTDEQLLKEVEYLLRKGWVPCVEFELEKGFVHRQYNSSPGYYDGRYWTMWRLPLFGTTDAAQVLKEVAECKAEYPEAFIRI 156 HSP 2 Score: 36.5798 bits (83), Expect = 7.991e-67 Identity = 16/19 (84.21%), Postives = 17/19 (89.47%), Query Frame = 2 Query: 521 IGFDNKRQVQCISFIAAKP 577 IGFDN RQVQCISFIA+ P Sbjct: 157 IGFDNVRQVQCISFIASTP 175
BLAST of CX296506 vs. ExPASy Swiss-Prot
Match: RBS2_FLAPR (Ribulose bisphosphate carboxylase small chain 2, chloroplastic OS=Flaveria pringlei GN=RBCS2 PE=2 SV=1) HSP 1 Score: 233.032 bits (593), Expect = 7.991e-67 Identity = 106/153 (69.28%), Postives = 132/153 (86.27%), Query Frame = 1 Query: 61 SATVATANRASLAQASMVAPFTGLKSSSAFPATKKTNNDITSIASNGGRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEISYLIRSGWIPCLEFELEKGWVYREHHRSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRI 519 S+TVAT +RA+ AQA+MVAPFTGLKS+ AFPATKK N D +++ SNGGRVQCMKVWPP G K++ETLSYLP L++ L KE+ YL+R+ W+PCLEFELE G+VYRE+ RSPGYYDGRYWTMWKLPM+GCTD+ QV+KE+ E +KEYP +++RI Sbjct: 5 SSTVATVSRAAPAQANMVAPFTGLKSNVAFPATKKAN-DFSTLPSNGGRVQCMKVWPPLGKKRYETLSYLPNLTEAQLAKEVDYLLRNKWVPCLEFELEHGFVYRENARSPGYYDGRYWTMWKLPMFGCTDSAQVMKELQECKKEYPQAWIRI 156 HSP 2 Score: 40.817 bits (94), Expect = 7.991e-67 Identity = 18/21 (85.71%), Postives = 19/21 (90.48%), Query Frame = 2 Query: 521 IGFDNKRQVQCISFIAAKPPG 583 IGFDN RQVQCISFIA+KP G Sbjct: 157 IGFDNVRQVQCISFIASKPEG 177
BLAST of CX296506 vs. ExPASy Swiss-Prot
Match: RBS5_LEMGI (Ribulose bisphosphate carboxylase small chain SSU5A, chloroplastic OS=Lemna gibba GN=SSU5A PE=3 SV=1) HSP 1 Score: 232.646 bits (592), Expect = 1.359e-66 Identity = 110/160 (68.75%), Postives = 131/160 (81.88%), Query Frame = 1 Query: 40 MASSMISSATVATANRASLAQASMVAPFTGLKSSSAFPATKKTNNDITSIASNGGRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEISYLIRSGWIPCLEFELEKGWVYREHHRSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRI 519 MASSM++S A RA AQ+SMVAPF GL+SS AFPAT+K NND++++ SNGGRV CM+VWPP GLKKFETLSYLPPLS E L KE+ YL+R+ W+PC+EF E G+VYRE+H SPGYYDGRYWTMWKLPM+GCTDA+QV+ EV E +K YP FVRI Sbjct: 1 MASSMMAST--AAVARAGPAQSSMVAPFNGLRSSVAFPATRKANNDLSTLPSNGGRVSCMQVWPPEGLKKFETLSYLPPLSVEDLAKEVDYLLRNDWVPCIEFSKE-GFVYRENHASPGYYDGRYWTMWKLPMFGCTDASQVIAEVEEAKKAYPEYFVRI 157 HSP 2 Score: 40.4318 bits (93), Expect = 1.359e-66 Identity = 18/19 (94.74%), Postives = 18/19 (94.74%), Query Frame = 2 Query: 521 IGFDNKRQVQCISFIAAKP 577 IGFDNKRQVQCISFIA KP Sbjct: 158 IGFDNKRQVQCISFIAYKP 176
BLAST of CX296506 vs. ExPASy Swiss-Prot
Match: RBS6_LEMGI (Ribulose bisphosphate carboxylase small chain SSU5B, chloroplastic OS=Lemna gibba GN=SSU5B PE=3 SV=1) HSP 1 Score: 229.565 bits (584), Expect = 1.136e-65 Identity = 108/160 (67.50%), Postives = 129/160 (80.62%), Query Frame = 1 Query: 40 MASSMISSATVATANRASLAQASMVAPFTGLKSSSAFPATKKTNNDITSIASNGGRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEISYLIRSGWIPCLEFELEKGWVYREHHRSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRI 519 MASSM++S A R AQ +MVAPF GL+SS AFPAT+K NND++++ SNGGRV CM+VWPP GLKKFETLSYLPPLS E L KE+ YL+R+ W+PC+EF E G+VYRE+H SPGYYDGRYWTMWKLPM+GCTDA+QV+ EV E +K YP FVRI Sbjct: 1 MASSMMAST--AAVARVGPAQTNMVAPFNGLRSSVAFPATRKANNDLSTLPSNGGRVSCMQVWPPEGLKKFETLSYLPPLSVEDLAKEVDYLLRNDWVPCIEFSKE-GFVYRENHASPGYYDGRYWTMWKLPMFGCTDASQVIAEVEEAKKAYPEYFVRI 157 HSP 2 Score: 40.4318 bits (93), Expect = 1.136e-65 Identity = 18/19 (94.74%), Postives = 18/19 (94.74%), Query Frame = 2 Query: 521 IGFDNKRQVQCISFIAAKP 577 IGFDNKRQVQCISFIA KP Sbjct: 158 IGFDNKRQVQCISFIAYKP 176
BLAST of CX296506 vs. ExPASy Swiss-Prot
Match: RBS3_FRIAG (Ribulose bisphosphate carboxylase small chain 3, chloroplastic OS=Fritillaria agrestis GN=RBCS3 PE=2 SV=1) HSP 1 Score: 232.646 bits (592), Expect = 2.519e-65 Identity = 110/160 (68.75%), Postives = 134/160 (83.75%), Query Frame = 1 Query: 40 MASSMISSATVATANRASLAQASMVAPFTGLKSSSAFPATKKTNNDITSIASNGGRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEISYLIRSGWIPCLEFELEKGWVYREHHRSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRI 519 MASS ++VATA RA+ AQASMVAPF GLKS+SAFP T+K ++++ SNGGRVQCMKVWP GLKKFETLSYLP LS E+LLK+I YLIR+GW+PCLEF LE G+V R++++SPGYYDGRYWTMWKLPM+GCTDA QV+KE E +KEYP +F+R+ Sbjct: 1 MASSATMLSSVATAARAAPAQASMVAPFVGLKSASAFPVTQKPATGLSTLPSNGGRVQCMKVWPIVGLKKFETLSYLPTLSVESLLKQIEYLIRNGWVPCLEFSLE-GFVSRDNNKSPGYYDGRYWTMWKLPMFGCTDAAQVVKEAAECKKEYPAAFIRV 159 HSP 2 Score: 36.1946 bits (82), Expect = 2.519e-65 Identity = 15/19 (78.95%), Postives = 16/19 (84.21%), Query Frame = 2 Query: 521 IGFDNKRQVQCISFIAAKP 577 IGFDN RQVQC+SFI KP Sbjct: 160 IGFDNVRQVQCVSFIVEKP 178
BLAST of CX296506 vs. ExPASy Swiss-Prot
Match: RBS_SILPR (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Silene pratensis GN=RBCS PE=2 SV=1) HSP 1 Score: 226.868 bits (577), Expect = 7.284e-65 Identity = 106/158 (67.09%), Postives = 133/158 (84.18%), Query Frame = 1 Query: 46 SSMISSATVATANRASLAQASMVAPFTGLKSSSAFPATKKTNNDITSIASNGGRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEISYLIRSGWIPCLEFELEKGWVYREHHRSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRI 519 +S++S+A V TA+ A AQA+MVAPF+GLKS+SAFP ++K+N DITS+A+NGGRV CM+VWPP LKKFETLSYLP LS+E+LLKEI+YL+ GW+PCLEFE+ VYRE+++SPGYYDGRYWTMWKLPM+GCTDA+QV EV E + YP + VRI Sbjct: 2 ASLMSNAAVVTASTA--AQANMVAPFSGLKSTSAFPVSRKSNVDITSLATNGGRVNCMQVWPPRNLKKFETLSYLPTLSEESLLKEINYLLIKGWVPCLEFEVGPAHVYRENNKSPGYYDGRYWTMWKLPMFGCTDASQVAAEVVECKNAYPDAHVRI 157 HSP 2 Score: 40.4318 bits (93), Expect = 7.284e-65 Identity = 18/19 (94.74%), Postives = 18/19 (94.74%), Query Frame = 2 Query: 521 IGFDNKRQVQCISFIAAKP 577 IGFDNKRQVQCISFIA KP Sbjct: 158 IGFDNKRQVQCISFIAYKP 176 The following BLAST results are available for this feature:
BLAST of CX296506 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 120
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Sequences
The
following sequences are available for this feature:
EST sequence >CX296506 ID=CX296506; Name=CX296506; organism=Citrus clementina; type=EST; length=709bpback to top |