CX296506
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CX296506 vs. ExPASy Swiss-Prot
Match: RBS2_LEMGI (Ribulose bisphosphate carboxylase small chain SSU26, chloroplastic OS=Lemna gibba GN=SSU26 PE=3 SV=1) HSP 1 Score: 226.098 bits (575), Expect = 1.239e-64 Identity = 106/160 (66.25%), Postives = 130/160 (81.25%), Query Frame = 1 Query: 40 MASSMISSATVATANRASLAQASMVAPFTGLKSSSAFPATKKTNNDITSIASNGGRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEISYLIRSGWIPCLEFELEKGWVYREHHRSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRI 519 MASSM++S A RA AQ++MVAPF GL+SS AFPAT+K N +++++ SNGG+V CM+VWPP GLKKFETLSYLPPLS E L KE+ YL+R+ W+PC+EF E G+VYRE+H SPGYYDGRYWTMWKLPM+GCTDA+QV+ EV E +K YP FVRI Sbjct: 1 MASSMMAST--AAVARAGPAQSNMVAPFNGLRSSVAFPATRKANKNLSTLPSNGGKVSCMQVWPPEGLKKFETLSYLPPLSVEDLAKEVDYLLRNDWVPCIEFSKE-GFVYRENHASPGYYDGRYWTMWKLPMFGCTDASQVIAEVEEAKKAYPEYFVRI 157 HSP 2 Score: 40.4318 bits (93), Expect = 1.239e-64 Identity = 18/19 (94.74%), Postives = 18/19 (94.74%), Query Frame = 2 Query: 521 IGFDNKRQVQCISFIAAKP 577 IGFDNKRQVQCISFIA KP Sbjct: 158 IGFDNKRQVQCISFIAYKP 176
BLAST of CX296506 vs. ExPASy Swiss-Prot
Match: RBS2_FRIAG (Ribulose bisphosphate carboxylase small chain 2, chloroplastic OS=Fritillaria agrestis GN=RBCS2 PE=2 SV=1) HSP 1 Score: 229.95 bits (585), Expect = 1.615e-64 Identity = 109/160 (68.12%), Postives = 133/160 (83.12%), Query Frame = 1 Query: 40 MASSMISSATVATANRASLAQASMVAPFTGLKSSSAFPATKKTNNDITSIASNGGRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEISYLIRSGWIPCLEFELEKGWVYREHHRSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRI 519 MASS ++VATA + AQASMVAPF GLKS+SAFP T+KT ++++ SNGGRVQCMKVWP GLKKFETLSYLP LS E+LLK+I YLIR+GW+PCLEF LE G+V R++++SPGYYDGRYWTMWKLPM+GCTDA QV+KE E +KEYP +F+R+ Sbjct: 1 MASSATMLSSVATAACVAPAQASMVAPFVGLKSASAFPVTQKTVTGLSTLPSNGGRVQCMKVWPIVGLKKFETLSYLPTLSVESLLKQIEYLIRNGWVPCLEFSLE-GFVSRDNNKSPGYYDGRYWTMWKLPMFGCTDAAQVVKEAAECKKEYPAAFIRV 159 HSP 2 Score: 36.1946 bits (82), Expect = 1.615e-64 Identity = 15/19 (78.95%), Postives = 16/19 (84.21%), Query Frame = 2 Query: 521 IGFDNKRQVQCISFIAAKP 577 IGFDN RQVQC+SFI KP Sbjct: 160 IGFDNVRQVQCVSFIVEKP 178
BLAST of CX296506 vs. ExPASy Swiss-Prot
Match: RBS7_FLAPR (Ribulose bisphosphate carboxylase small chain 7, chloroplastic OS=Flaveria pringlei GN=RBCS7 PE=2 SV=1) HSP 1 Score: 224.942 bits (572), Expect = 2.107e-64 Identity = 101/147 (68.71%), Postives = 127/147 (86.39%), Query Frame = 1 Query: 79 ANRASLAQASMVAPFTGLKSSSAFPATKKTNNDITSIASNGGRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEISYLIRSGWIPCLEFELEKGWVYREHHRSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRI 519 A A++AQA+MVAPFTGLKS++AFP TKK N D +++ASNGGRVQCMKVWPP G K++ETLSYLP L++ L KE+ YL+R+ W+PCLEFELE G+VYRE+ RSPGYYDGRYWTMWKLPM+GCTD+ QV+KE+ E +KEYP +++RI Sbjct: 6 ATVATVAQANMVAPFTGLKSNAAFPVTKKVN-DFSTLASNGGRVQCMKVWPPLGKKRYETLSYLPNLTEVQLAKEVDYLLRNKWVPCLEFELEHGFVYRENARSPGYYDGRYWTMWKLPMFGCTDSAQVMKELQECKKEYPQAWIRI 151 HSP 2 Score: 40.817 bits (94), Expect = 2.107e-64 Identity = 18/21 (85.71%), Postives = 19/21 (90.48%), Query Frame = 2 Query: 521 IGFDNKRQVQCISFIAAKPPG 583 IGFDN RQVQCISFIA+KP G Sbjct: 152 IGFDNVRQVQCISFIASKPDG 172
BLAST of CX296506 vs. ExPASy Swiss-Prot
Match: RBS5_FRIAG (Ribulose bisphosphate carboxylase small chain 5, chloroplastic OS=Fritillaria agrestis GN=RBCS5 PE=2 SV=1) HSP 1 Score: 229.18 bits (583), Expect = 2.746e-64 Identity = 109/160 (68.12%), Postives = 133/160 (83.12%), Query Frame = 1 Query: 40 MASSMISSATVATANRASLAQASMVAPFTGLKSSSAFPATKKTNNDITSIASNGGRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEISYLIRSGWIPCLEFELEKGWVYREHHRSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRI 519 MASS ++VATA A+ AQASMVAPF GLKS+SAFP T+KT ++++ SNGGRVQCMKVWP GLKKFETLSYLP LS E+LLK+I YLIR+GW+PCLEF LE G+V R++++SPGYYDGRYWTMWKLPM+GCT A QV+KE E +KEYP +F+R+ Sbjct: 1 MASSATMLSSVATAACAAPAQASMVAPFVGLKSASAFPVTQKTATGLSTLPSNGGRVQCMKVWPIVGLKKFETLSYLPTLSVESLLKQIEYLIRNGWVPCLEFSLE-GFVSRDNNKSPGYYDGRYWTMWKLPMFGCTGAAQVVKEAAECKKEYPAAFIRV 159 HSP 2 Score: 36.1946 bits (82), Expect = 2.746e-64 Identity = 15/19 (78.95%), Postives = 16/19 (84.21%), Query Frame = 2 Query: 521 IGFDNKRQVQCISFIAAKP 577 IGFDN RQVQC+SFI KP Sbjct: 160 IGFDNVRQVQCVSFIVEKP 178
BLAST of CX296506 vs. ExPASy Swiss-Prot
Match: RBS3_FLAPR (Ribulose bisphosphate carboxylase small chain 3, chloroplastic OS=Flaveria pringlei GN=RBCS3 PE=2 SV=1) HSP 1 Score: 223.787 bits (569), Expect = 4.671e-64 Identity = 100/147 (68.03%), Postives = 126/147 (85.71%), Query Frame = 1 Query: 79 ANRASLAQASMVAPFTGLKSSSAFPATKKTNNDITSIASNGGRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEISYLIRSGWIPCLEFELEKGWVYREHHRSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRI 519 A A++AQA+MVAPFTGLKS++AFP TKK N D +++ SNGGRVQCMKVWPP G K++ETLSYLP L++ L KE+ YL+R+ W+PCLEFELE G+VYRE+ RSPGYYDGRYWTMWKLPM+GCTD+ QV+KE+ E +KEYP +++RI Sbjct: 6 ATVATVAQANMVAPFTGLKSNAAFPVTKKVN-DFSTLPSNGGRVQCMKVWPPLGKKRYETLSYLPNLTESQLAKEVDYLLRNKWVPCLEFELEHGFVYRENARSPGYYDGRYWTMWKLPMFGCTDSAQVMKELQECKKEYPQAWIRI 151 HSP 2 Score: 40.817 bits (94), Expect = 4.671e-64 Identity = 18/21 (85.71%), Postives = 19/21 (90.48%), Query Frame = 2 Query: 521 IGFDNKRQVQCISFIAAKPPG 583 IGFDN RQVQCISFIA+KP G Sbjct: 152 IGFDNVRQVQCISFIASKPDG 172
BLAST of CX296506 vs. ExPASy Swiss-Prot
Match: RBS1_FLAPR (Ribulose bisphosphate carboxylase small chain 1, chloroplastic OS=Flaveria pringlei GN=RBCS1 PE=2 SV=1) HSP 1 Score: 223.402 bits (568), Expect = 7.942e-64 Identity = 100/147 (68.03%), Postives = 126/147 (85.71%), Query Frame = 1 Query: 79 ANRASLAQASMVAPFTGLKSSSAFPATKKTNNDITSIASNGGRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEISYLIRSGWIPCLEFELEKGWVYREHHRSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRI 519 A A++AQA+MVAPFTGLK+++AFP TKK N D +++ SNGGRVQCMKVWPP G KK+ETLSYLP L++ L KE+ YL+R+ W+PCLEFELE G+VYRE+ RSPGYYDGRYWTMWKLPM+GCTD+ QV+KE+ E +KEYP +++RI Sbjct: 6 ATVATVAQANMVAPFTGLKANAAFPVTKKVN-DFSTLPSNGGRVQCMKVWPPLGKKKYETLSYLPDLTEVQLAKEVDYLLRNKWVPCLEFELEHGFVYRENARSPGYYDGRYWTMWKLPMFGCTDSAQVMKELQECKKEYPQAWIRI 151 HSP 2 Score: 40.4318 bits (93), Expect = 7.942e-64 Identity = 18/21 (85.71%), Postives = 19/21 (90.48%), Query Frame = 2 Query: 521 IGFDNKRQVQCISFIAAKPPG 583 IGFDN RQVQCISFIA+KP G Sbjct: 152 IGFDNVRQVQCISFIASKPGG 172
BLAST of CX296506 vs. ExPASy Swiss-Prot
Match: RBS5_FLAPR (Ribulose bisphosphate carboxylase small chain 5, chloroplastic OS=Flaveria pringlei GN=RBCS5 PE=2 SV=1) HSP 1 Score: 223.016 bits (567), Expect = 7.942e-64 Identity = 100/147 (68.03%), Postives = 126/147 (85.71%), Query Frame = 1 Query: 79 ANRASLAQASMVAPFTGLKSSSAFPATKKTNNDITSIASNGGRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEISYLIRSGWIPCLEFELEKGWVYREHHRSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRI 519 A A++AQA+MVAPFTGLKS++AFP TKK N D +++ SNGGRVQCMKVWPP G K++ETLSYLP L++ L KE+ YL+R+ W+PCLEFELE G+VYRE+ RSPGYYDGRYWTMWKLPM+GCTD+ QV+KE+ E +KEYP +++RI Sbjct: 6 ATVATVAQANMVAPFTGLKSNAAFPVTKKVN-DFSTLPSNGGRVQCMKVWPPLGKKRYETLSYLPNLTEVQLAKEVDYLLRNKWVPCLEFELEHGFVYRENARSPGYYDGRYWTMWKLPMFGCTDSAQVMKELQECKKEYPQAWIRI 151 HSP 2 Score: 40.817 bits (94), Expect = 7.942e-64 Identity = 18/21 (85.71%), Postives = 19/21 (90.48%), Query Frame = 2 Query: 521 IGFDNKRQVQCISFIAAKPPG 583 IGFDN RQVQCISFIA+KP G Sbjct: 152 IGFDNVRQVQCISFIASKPDG 172
BLAST of CX296506 vs. ExPASy Swiss-Prot
Match: RBS1_FRIAG (Ribulose bisphosphate carboxylase small chain 1/4, chloroplastic OS=Fritillaria agrestis GN=RBCS1 PE=2 SV=1) HSP 1 Score: 228.409 bits (581), Expect = 1.035e-63 Identity = 108/160 (67.50%), Postives = 133/160 (83.12%), Query Frame = 1 Query: 40 MASSMISSATVATANRASLAQASMVAPFTGLKSSSAFPATKKTNNDITSIASNGGRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEISYLIRSGWIPCLEFELEKGWVYREHHRSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRI 519 MA+S ++VATA A+ AQASMVAPF GLKS+SAFP T+K ++++ SNGGRVQCMKVWP GLKKFETLSYLP LS E+LLK+I YLIR+GW+PCLEF LE G+V R++++SPGYYDGRYWTMWKLPM+GCTDA QV+KE E +KEYP +F+R+ Sbjct: 1 MAASSTMLSSVATAACAAPAQASMVAPFVGLKSTSAFPVTQKPATGLSTLPSNGGRVQCMKVWPIVGLKKFETLSYLPTLSVESLLKQIEYLIRNGWVPCLEFSLE-GFVSRDNNKSPGYYDGRYWTMWKLPMFGCTDAAQVVKEAAECKKEYPAAFIRV 159 HSP 2 Score: 35.039 bits (79), Expect = 1.035e-63 Identity = 14/19 (73.68%), Postives = 16/19 (84.21%), Query Frame = 2 Query: 521 IGFDNKRQVQCISFIAAKP 577 IGFDN RQVQC+SFI +P Sbjct: 160 IGFDNVRQVQCVSFIVERP 178
BLAST of CX296506 vs. ExPASy Swiss-Prot
Match: RBS4_LEMGI (Ribulose bisphosphate carboxylase small chain SSU40B, chloroplastic OS=Lemna gibba GN=SSU40B PE=3 SV=1) HSP 1 Score: 221.476 bits (563), Expect = 2.993e-63 Identity = 106/160 (66.25%), Postives = 127/160 (79.38%), Query Frame = 1 Query: 40 MASSMISSATVATANRASLAQASMVAPFTGLKSSSAFPATKKTNNDITSIASNGGRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEISYLIRSGWIPCLEFELEKGWVYREHHRSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRI 519 MASSM++S A A RA AQ +MV PF +SS FPAT+K NND++++ SNGGRV CM+VWPP GLKKFETLSYLPPLS E L KE+ YL+R+ W+PC+EF E G+VYRE+H SPGYYDGRYWTMWKLPM+GCTDA+QV+ EV E +K YP FVRI Sbjct: 1 MASSMMASTAAAVA-RAGPAQTNMV-PFNACRSSVPFPATRKANNDLSTLPSNGGRVSCMQVWPPEGLKKFETLSYLPPLSVEDLAKEVDYLLRNDWVPCIEFSKE-GFVYRENHASPGYYDGRYWTMWKLPMFGCTDASQVIAEVEEAKKAYPEYFVRI 157 HSP 2 Score: 40.4318 bits (93), Expect = 2.993e-63 Identity = 18/19 (94.74%), Postives = 18/19 (94.74%), Query Frame = 2 Query: 521 IGFDNKRQVQCISFIAAKP 577 IGFDNKRQVQCISFIA KP Sbjct: 158 IGFDNKRQVQCISFIAYKP 176
BLAST of CX296506 vs. ExPASy Swiss-Prot
Match: RBS3_LEMGI (Ribulose bisphosphate carboxylase small chain SSU40A, chloroplastic OS=Lemna gibba GN=SSU40A PE=3 SV=1) HSP 1 Score: 219.55 bits (558), Expect = 1.128e-62 Identity = 105/160 (65.62%), Postives = 127/160 (79.38%), Query Frame = 1 Query: 40 MASSMISSATVATANRASLAQASMVAPFTGLKSSSAFPATKKTNNDITSIASNGGRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEISYLIRSGWIPCLEFELEKGWVYREHHRSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRI 519 MASSM++S A A RA AQ+SMV PF +SS FPAT+K NN+++++ NGGRV CM+VWPP GLKKFETLSYLPPLS E L KE+ YL+R+ W+PC+EF E G+VYRE+H SPGYYDGRYWTMWKLPM+GCTDA+QV+ EV E +K YP FVRI Sbjct: 1 MASSMMASTAAAVA-RAGPAQSSMV-PFNACRSSVPFPATRKANNNLSTLPGNGGRVSCMQVWPPEGLKKFETLSYLPPLSVEDLAKEVDYLLRNDWVPCIEFSKE-GFVYRENHASPGYYDGRYWTMWKLPMFGCTDASQVIAEVEEAKKAYPEYFVRI 157 HSP 2 Score: 40.4318 bits (93), Expect = 1.128e-62 Identity = 18/19 (94.74%), Postives = 18/19 (94.74%), Query Frame = 2 Query: 521 IGFDNKRQVQCISFIAAKP 577 IGFDNKRQVQCISFIA KP Sbjct: 158 IGFDNKRQVQCISFIAYKP 176 The following BLAST results are available for this feature:
BLAST of CX296506 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 120
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Sequences
The
following sequences are available for this feature:
EST sequence >CX296506 ID=CX296506; Name=CX296506; organism=Citrus clementina; type=EST; length=709bpback to top |