CX296506

Overview
NameCX296506
Unique NameCX296506
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length709
Libraries
Library NameType
FerrChloL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX296506 vs. ExPASy Swiss-Prot
Match: RBS2_LEMGI (Ribulose bisphosphate carboxylase small chain SSU26, chloroplastic OS=Lemna gibba GN=SSU26 PE=3 SV=1)

HSP 1 Score: 226.098 bits (575), Expect = 1.239e-64
Identity = 106/160 (66.25%), Postives = 130/160 (81.25%), Query Frame = 1
Query:   40 MASSMISSATVATANRASLAQASMVAPFTGLKSSSAFPATKKTNNDITSIASNGGRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEISYLIRSGWIPCLEFELEKGWVYREHHRSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRI 519
            MASSM++S   A   RA  AQ++MVAPF GL+SS AFPAT+K N +++++ SNGG+V CM+VWPP GLKKFETLSYLPPLS E L KE+ YL+R+ W+PC+EF  E G+VYRE+H SPGYYDGRYWTMWKLPM+GCTDA+QV+ EV E +K YP  FVRI
Sbjct:    1 MASSMMAST--AAVARAGPAQSNMVAPFNGLRSSVAFPATRKANKNLSTLPSNGGKVSCMQVWPPEGLKKFETLSYLPPLSVEDLAKEVDYLLRNDWVPCIEFSKE-GFVYRENHASPGYYDGRYWTMWKLPMFGCTDASQVIAEVEEAKKAYPEYFVRI 157          

HSP 2 Score: 40.4318 bits (93), Expect = 1.239e-64
Identity = 18/19 (94.74%), Postives = 18/19 (94.74%), Query Frame = 2
Query:  521 IGFDNKRQVQCISFIAAKP 577
            IGFDNKRQVQCISFIA KP
Sbjct:  158 IGFDNKRQVQCISFIAYKP 176          
BLAST of CX296506 vs. ExPASy Swiss-Prot
Match: RBS2_FRIAG (Ribulose bisphosphate carboxylase small chain 2, chloroplastic OS=Fritillaria agrestis GN=RBCS2 PE=2 SV=1)

HSP 1 Score: 229.95 bits (585), Expect = 1.615e-64
Identity = 109/160 (68.12%), Postives = 133/160 (83.12%), Query Frame = 1
Query:   40 MASSMISSATVATANRASLAQASMVAPFTGLKSSSAFPATKKTNNDITSIASNGGRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEISYLIRSGWIPCLEFELEKGWVYREHHRSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRI 519
            MASS    ++VATA   + AQASMVAPF GLKS+SAFP T+KT   ++++ SNGGRVQCMKVWP  GLKKFETLSYLP LS E+LLK+I YLIR+GW+PCLEF LE G+V R++++SPGYYDGRYWTMWKLPM+GCTDA QV+KE  E +KEYP +F+R+
Sbjct:    1 MASSATMLSSVATAACVAPAQASMVAPFVGLKSASAFPVTQKTVTGLSTLPSNGGRVQCMKVWPIVGLKKFETLSYLPTLSVESLLKQIEYLIRNGWVPCLEFSLE-GFVSRDNNKSPGYYDGRYWTMWKLPMFGCTDAAQVVKEAAECKKEYPAAFIRV 159          

HSP 2 Score: 36.1946 bits (82), Expect = 1.615e-64
Identity = 15/19 (78.95%), Postives = 16/19 (84.21%), Query Frame = 2
Query:  521 IGFDNKRQVQCISFIAAKP 577
            IGFDN RQVQC+SFI  KP
Sbjct:  160 IGFDNVRQVQCVSFIVEKP 178          
BLAST of CX296506 vs. ExPASy Swiss-Prot
Match: RBS7_FLAPR (Ribulose bisphosphate carboxylase small chain 7, chloroplastic OS=Flaveria pringlei GN=RBCS7 PE=2 SV=1)

HSP 1 Score: 224.942 bits (572), Expect = 2.107e-64
Identity = 101/147 (68.71%), Postives = 127/147 (86.39%), Query Frame = 1
Query:   79 ANRASLAQASMVAPFTGLKSSSAFPATKKTNNDITSIASNGGRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEISYLIRSGWIPCLEFELEKGWVYREHHRSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRI 519
            A  A++AQA+MVAPFTGLKS++AFP TKK N D +++ASNGGRVQCMKVWPP G K++ETLSYLP L++  L KE+ YL+R+ W+PCLEFELE G+VYRE+ RSPGYYDGRYWTMWKLPM+GCTD+ QV+KE+ E +KEYP +++RI
Sbjct:    6 ATVATVAQANMVAPFTGLKSNAAFPVTKKVN-DFSTLASNGGRVQCMKVWPPLGKKRYETLSYLPNLTEVQLAKEVDYLLRNKWVPCLEFELEHGFVYRENARSPGYYDGRYWTMWKLPMFGCTDSAQVMKELQECKKEYPQAWIRI 151          

HSP 2 Score: 40.817 bits (94), Expect = 2.107e-64
Identity = 18/21 (85.71%), Postives = 19/21 (90.48%), Query Frame = 2
Query:  521 IGFDNKRQVQCISFIAAKPPG 583
            IGFDN RQVQCISFIA+KP G
Sbjct:  152 IGFDNVRQVQCISFIASKPDG 172          
BLAST of CX296506 vs. ExPASy Swiss-Prot
Match: RBS5_FRIAG (Ribulose bisphosphate carboxylase small chain 5, chloroplastic OS=Fritillaria agrestis GN=RBCS5 PE=2 SV=1)

HSP 1 Score: 229.18 bits (583), Expect = 2.746e-64
Identity = 109/160 (68.12%), Postives = 133/160 (83.12%), Query Frame = 1
Query:   40 MASSMISSATVATANRASLAQASMVAPFTGLKSSSAFPATKKTNNDITSIASNGGRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEISYLIRSGWIPCLEFELEKGWVYREHHRSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRI 519
            MASS    ++VATA  A+ AQASMVAPF GLKS+SAFP T+KT   ++++ SNGGRVQCMKVWP  GLKKFETLSYLP LS E+LLK+I YLIR+GW+PCLEF LE G+V R++++SPGYYDGRYWTMWKLPM+GCT A QV+KE  E +KEYP +F+R+
Sbjct:    1 MASSATMLSSVATAACAAPAQASMVAPFVGLKSASAFPVTQKTATGLSTLPSNGGRVQCMKVWPIVGLKKFETLSYLPTLSVESLLKQIEYLIRNGWVPCLEFSLE-GFVSRDNNKSPGYYDGRYWTMWKLPMFGCTGAAQVVKEAAECKKEYPAAFIRV 159          

HSP 2 Score: 36.1946 bits (82), Expect = 2.746e-64
Identity = 15/19 (78.95%), Postives = 16/19 (84.21%), Query Frame = 2
Query:  521 IGFDNKRQVQCISFIAAKP 577
            IGFDN RQVQC+SFI  KP
Sbjct:  160 IGFDNVRQVQCVSFIVEKP 178          
BLAST of CX296506 vs. ExPASy Swiss-Prot
Match: RBS3_FLAPR (Ribulose bisphosphate carboxylase small chain 3, chloroplastic OS=Flaveria pringlei GN=RBCS3 PE=2 SV=1)

HSP 1 Score: 223.787 bits (569), Expect = 4.671e-64
Identity = 100/147 (68.03%), Postives = 126/147 (85.71%), Query Frame = 1
Query:   79 ANRASLAQASMVAPFTGLKSSSAFPATKKTNNDITSIASNGGRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEISYLIRSGWIPCLEFELEKGWVYREHHRSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRI 519
            A  A++AQA+MVAPFTGLKS++AFP TKK N D +++ SNGGRVQCMKVWPP G K++ETLSYLP L++  L KE+ YL+R+ W+PCLEFELE G+VYRE+ RSPGYYDGRYWTMWKLPM+GCTD+ QV+KE+ E +KEYP +++RI
Sbjct:    6 ATVATVAQANMVAPFTGLKSNAAFPVTKKVN-DFSTLPSNGGRVQCMKVWPPLGKKRYETLSYLPNLTESQLAKEVDYLLRNKWVPCLEFELEHGFVYRENARSPGYYDGRYWTMWKLPMFGCTDSAQVMKELQECKKEYPQAWIRI 151          

HSP 2 Score: 40.817 bits (94), Expect = 4.671e-64
Identity = 18/21 (85.71%), Postives = 19/21 (90.48%), Query Frame = 2
Query:  521 IGFDNKRQVQCISFIAAKPPG 583
            IGFDN RQVQCISFIA+KP G
Sbjct:  152 IGFDNVRQVQCISFIASKPDG 172          
BLAST of CX296506 vs. ExPASy Swiss-Prot
Match: RBS1_FLAPR (Ribulose bisphosphate carboxylase small chain 1, chloroplastic OS=Flaveria pringlei GN=RBCS1 PE=2 SV=1)

HSP 1 Score: 223.402 bits (568), Expect = 7.942e-64
Identity = 100/147 (68.03%), Postives = 126/147 (85.71%), Query Frame = 1
Query:   79 ANRASLAQASMVAPFTGLKSSSAFPATKKTNNDITSIASNGGRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEISYLIRSGWIPCLEFELEKGWVYREHHRSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRI 519
            A  A++AQA+MVAPFTGLK+++AFP TKK N D +++ SNGGRVQCMKVWPP G KK+ETLSYLP L++  L KE+ YL+R+ W+PCLEFELE G+VYRE+ RSPGYYDGRYWTMWKLPM+GCTD+ QV+KE+ E +KEYP +++RI
Sbjct:    6 ATVATVAQANMVAPFTGLKANAAFPVTKKVN-DFSTLPSNGGRVQCMKVWPPLGKKKYETLSYLPDLTEVQLAKEVDYLLRNKWVPCLEFELEHGFVYRENARSPGYYDGRYWTMWKLPMFGCTDSAQVMKELQECKKEYPQAWIRI 151          

HSP 2 Score: 40.4318 bits (93), Expect = 7.942e-64
Identity = 18/21 (85.71%), Postives = 19/21 (90.48%), Query Frame = 2
Query:  521 IGFDNKRQVQCISFIAAKPPG 583
            IGFDN RQVQCISFIA+KP G
Sbjct:  152 IGFDNVRQVQCISFIASKPGG 172          
BLAST of CX296506 vs. ExPASy Swiss-Prot
Match: RBS5_FLAPR (Ribulose bisphosphate carboxylase small chain 5, chloroplastic OS=Flaveria pringlei GN=RBCS5 PE=2 SV=1)

HSP 1 Score: 223.016 bits (567), Expect = 7.942e-64
Identity = 100/147 (68.03%), Postives = 126/147 (85.71%), Query Frame = 1
Query:   79 ANRASLAQASMVAPFTGLKSSSAFPATKKTNNDITSIASNGGRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEISYLIRSGWIPCLEFELEKGWVYREHHRSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRI 519
            A  A++AQA+MVAPFTGLKS++AFP TKK N D +++ SNGGRVQCMKVWPP G K++ETLSYLP L++  L KE+ YL+R+ W+PCLEFELE G+VYRE+ RSPGYYDGRYWTMWKLPM+GCTD+ QV+KE+ E +KEYP +++RI
Sbjct:    6 ATVATVAQANMVAPFTGLKSNAAFPVTKKVN-DFSTLPSNGGRVQCMKVWPPLGKKRYETLSYLPNLTEVQLAKEVDYLLRNKWVPCLEFELEHGFVYRENARSPGYYDGRYWTMWKLPMFGCTDSAQVMKELQECKKEYPQAWIRI 151          

HSP 2 Score: 40.817 bits (94), Expect = 7.942e-64
Identity = 18/21 (85.71%), Postives = 19/21 (90.48%), Query Frame = 2
Query:  521 IGFDNKRQVQCISFIAAKPPG 583
            IGFDN RQVQCISFIA+KP G
Sbjct:  152 IGFDNVRQVQCISFIASKPDG 172          
BLAST of CX296506 vs. ExPASy Swiss-Prot
Match: RBS1_FRIAG (Ribulose bisphosphate carboxylase small chain 1/4, chloroplastic OS=Fritillaria agrestis GN=RBCS1 PE=2 SV=1)

HSP 1 Score: 228.409 bits (581), Expect = 1.035e-63
Identity = 108/160 (67.50%), Postives = 133/160 (83.12%), Query Frame = 1
Query:   40 MASSMISSATVATANRASLAQASMVAPFTGLKSSSAFPATKKTNNDITSIASNGGRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEISYLIRSGWIPCLEFELEKGWVYREHHRSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRI 519
            MA+S    ++VATA  A+ AQASMVAPF GLKS+SAFP T+K    ++++ SNGGRVQCMKVWP  GLKKFETLSYLP LS E+LLK+I YLIR+GW+PCLEF LE G+V R++++SPGYYDGRYWTMWKLPM+GCTDA QV+KE  E +KEYP +F+R+
Sbjct:    1 MAASSTMLSSVATAACAAPAQASMVAPFVGLKSTSAFPVTQKPATGLSTLPSNGGRVQCMKVWPIVGLKKFETLSYLPTLSVESLLKQIEYLIRNGWVPCLEFSLE-GFVSRDNNKSPGYYDGRYWTMWKLPMFGCTDAAQVVKEAAECKKEYPAAFIRV 159          

HSP 2 Score: 35.039 bits (79), Expect = 1.035e-63
Identity = 14/19 (73.68%), Postives = 16/19 (84.21%), Query Frame = 2
Query:  521 IGFDNKRQVQCISFIAAKP 577
            IGFDN RQVQC+SFI  +P
Sbjct:  160 IGFDNVRQVQCVSFIVERP 178          
BLAST of CX296506 vs. ExPASy Swiss-Prot
Match: RBS4_LEMGI (Ribulose bisphosphate carboxylase small chain SSU40B, chloroplastic OS=Lemna gibba GN=SSU40B PE=3 SV=1)

HSP 1 Score: 221.476 bits (563), Expect = 2.993e-63
Identity = 106/160 (66.25%), Postives = 127/160 (79.38%), Query Frame = 1
Query:   40 MASSMISSATVATANRASLAQASMVAPFTGLKSSSAFPATKKTNNDITSIASNGGRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEISYLIRSGWIPCLEFELEKGWVYREHHRSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRI 519
            MASSM++S   A A RA  AQ +MV PF   +SS  FPAT+K NND++++ SNGGRV CM+VWPP GLKKFETLSYLPPLS E L KE+ YL+R+ W+PC+EF  E G+VYRE+H SPGYYDGRYWTMWKLPM+GCTDA+QV+ EV E +K YP  FVRI
Sbjct:    1 MASSMMASTAAAVA-RAGPAQTNMV-PFNACRSSVPFPATRKANNDLSTLPSNGGRVSCMQVWPPEGLKKFETLSYLPPLSVEDLAKEVDYLLRNDWVPCIEFSKE-GFVYRENHASPGYYDGRYWTMWKLPMFGCTDASQVIAEVEEAKKAYPEYFVRI 157          

HSP 2 Score: 40.4318 bits (93), Expect = 2.993e-63
Identity = 18/19 (94.74%), Postives = 18/19 (94.74%), Query Frame = 2
Query:  521 IGFDNKRQVQCISFIAAKP 577
            IGFDNKRQVQCISFIA KP
Sbjct:  158 IGFDNKRQVQCISFIAYKP 176          
BLAST of CX296506 vs. ExPASy Swiss-Prot
Match: RBS3_LEMGI (Ribulose bisphosphate carboxylase small chain SSU40A, chloroplastic OS=Lemna gibba GN=SSU40A PE=3 SV=1)

HSP 1 Score: 219.55 bits (558), Expect = 1.128e-62
Identity = 105/160 (65.62%), Postives = 127/160 (79.38%), Query Frame = 1
Query:   40 MASSMISSATVATANRASLAQASMVAPFTGLKSSSAFPATKKTNNDITSIASNGGRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEISYLIRSGWIPCLEFELEKGWVYREHHRSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRI 519
            MASSM++S   A A RA  AQ+SMV PF   +SS  FPAT+K NN+++++  NGGRV CM+VWPP GLKKFETLSYLPPLS E L KE+ YL+R+ W+PC+EF  E G+VYRE+H SPGYYDGRYWTMWKLPM+GCTDA+QV+ EV E +K YP  FVRI
Sbjct:    1 MASSMMASTAAAVA-RAGPAQSSMV-PFNACRSSVPFPATRKANNNLSTLPGNGGRVSCMQVWPPEGLKKFETLSYLPPLSVEDLAKEVDYLLRNDWVPCIEFSKE-GFVYRENHASPGYYDGRYWTMWKLPMFGCTDASQVIAEVEEAKKAYPEYFVRI 157          

HSP 2 Score: 40.4318 bits (93), Expect = 1.128e-62
Identity = 18/19 (94.74%), Postives = 18/19 (94.74%), Query Frame = 2
Query:  521 IGFDNKRQVQCISFIAAKP 577
            IGFDNKRQVQCISFIA KP
Sbjct:  158 IGFDNKRQVQCISFIAYKP 176          
The following BLAST results are available for this feature:
BLAST of CX296506 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 120
Match NameE-valueIdentityDescription
RBS2_LEMGI1.239e-6466.25Ribulose bisphosphate carboxylase small chain SSU2... [more]
RBS2_FRIAG1.615e-6468.13Ribulose bisphosphate carboxylase small chain 2, c... [more]
RBS7_FLAPR2.107e-6468.71Ribulose bisphosphate carboxylase small chain 7, c... [more]
RBS5_FRIAG2.746e-6468.13Ribulose bisphosphate carboxylase small chain 5, c... [more]
RBS3_FLAPR4.671e-6468.03Ribulose bisphosphate carboxylase small chain 3, c... [more]
RBS1_FLAPR7.942e-6468.03Ribulose bisphosphate carboxylase small chain 1, c... [more]
RBS5_FLAPR7.942e-6468.03Ribulose bisphosphate carboxylase small chain 5, c... [more]
RBS1_FRIAG1.035e-6367.50Ribulose bisphosphate carboxylase small chain 1/4,... [more]
RBS4_LEMGI2.993e-6366.25Ribulose bisphosphate carboxylase small chain SSU4... [more]
RBS3_LEMGI1.128e-6265.63Ribulose bisphosphate carboxylase small chain SSU4... [more]

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Properties
Property NameValue
Genbank descriptionC05142A05SK FerrChloL1 Citrus clementina cDNA clone C05142A05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX296506 ID=CX296506; Name=CX296506; organism=Citrus clementina; type=EST; length=709bp
GAGGCCTCGTGCCGAATTCGGCACGAGGAGCAAGTACCAATGGCTTCCTC
AATGATCTCATCGGCCACCGTTGCCACCGCGAACCGCGCCAGCCTTGCTC
AGGCCAGCATGGTCGCCCCCTTCACCGGCCTCAAGTCTTCTTCTGCTTTC
CCAGCAACCAAGAAGACCAACAATGACATTACTTCCATTGCAAGCAACGG
CGGAAGAGTCCAATGCATGAAGGTGTGGCCACCAACTGGCTTGAAGAAGT
TCGAGACTCTCTCATACCTCCCGCCACTGTCCGATGAAGCTTTGCTCAAG
GAAATCAGTTACCTTATCCGCTCCGGCTGGATTCCCTGCTTGGAATTCGA
GTTGGAGAAAGGATGGGTGTACCGTGAGCACCACAGGTCACCAGGATACT
ACGATGGACGCTACTGGACAATGTGGAAGCTGCCCATGTATGGGTGCACA
GATGCAACCCAGGTTTTGAAGGAGGTTGGGGAGGTCCAGAAGGAATACCC
ACATTCATTCGTCCGAATTTATCGGATTTGACAACAAGCGTCAAGTGCAG
TGCATCAGTTTCATTGCTGCCAAGCCACCAGGCGTCTAGGTTCCCAATTA
AATTTGTGTAACCACCCATGCAATATTGTTGATTATTATTATGTGTAACC
CCCATAATGATCATTCGATCAATGGGGGTTCGGTTTGCGTTTAATTTGTA
CTTAGGCTG
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