CX296506

Overview
NameCX296506
Unique NameCX296506
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length709
Libraries
Library NameType
FerrChloL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX296506 vs. ExPASy Swiss-Prot
Match: RBS6_FLAPR (Ribulose bisphosphate carboxylase small chain 6, chloroplastic OS=Flaveria pringlei GN=RBCS6 PE=2 SV=1)

HSP 1 Score: 221.09 bits (562), Expect = 1.128e-62
Identity = 99/147 (67.35%), Postives = 125/147 (85.03%), Query Frame = 1
Query:   79 ANRASLAQASMVAPFTGLKSSSAFPATKKTNNDITSIASNGGRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEISYLIRSGWIPCLEFELEKGWVYREHHRSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRI 519
            A  A++AQA+MVAPFTGLK+++AFP TKK N D +++ SNGGRVQCMKVWPP G KK+ TLSYLP L++  L KE+ YL+R+ W+PCLEFELE G+VYRE+ RSPGYYDGRYWTMWKLPM+GCTD+ QV+KE+ E +KEYP +++RI
Sbjct:    6 ATVAAVAQANMVAPFTGLKANAAFPVTKKVN-DFSTLPSNGGRVQCMKVWPPLGKKKYXTLSYLPNLTEAQLAKEVDYLLRNKWVPCLEFELEHGFVYRENARSPGYYDGRYWTMWKLPMFGCTDSVQVMKELQECKKEYPQAWIRI 151          

HSP 2 Score: 38.891 bits (89), Expect = 1.128e-62
Identity = 17/19 (89.47%), Postives = 18/19 (94.74%), Query Frame = 2
Query:  521 IGFDNKRQVQCISFIAAKP 577
            IGFDN RQVQCISFIA+KP
Sbjct:  152 IGFDNVRQVQCISFIASKP 170          
BLAST of CX296506 vs. ExPASy Swiss-Prot
Match: RBS_FLATR (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Flaveria trinervia GN=RBCS PE=2 SV=1)

HSP 1 Score: 216.083 bits (549), Expect = 1.229e-61
Identity = 96/147 (65.31%), Postives = 122/147 (82.99%), Query Frame = 1
Query:   79 ANRASLAQASMVAPFTGLKSSSAFPATKKTNNDITSIASNGGRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEISYLIRSGWIPCLEFELEKGWVYREHHRSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRI 519
            A  A++ Q +MVAPFTGLK+++AFP TKK N   +++ SNGGRVQCMKVWPP G KK+ETLSYLP L++  L KE+ YL+R+ W+PCLEFELE G+VYRE+  SPGYYDGRYWTMWKLPM+GCTD+ QV+KE+ E +KEYP +++RI
Sbjct:    6 ATVAAVPQTNMVAPFTGLKANAAFPVTKKVNG-FSTLPSNGGRVQCMKVWPPVGKKKYETLSYLPELTEAQLAKEVDYLLRNKWVPCLEFELEHGFVYRENASSPGYYDGRYWTMWKLPMFGCTDSAQVMKELQECKKEYPQAWIRI 151          

HSP 2 Score: 40.4318 bits (93), Expect = 1.229e-61
Identity = 17/21 (80.95%), Postives = 19/21 (90.48%), Query Frame = 2
Query:  521 IGFDNKRQVQCISFIAAKPPG 583
            IGFDN RQVQC+SFIA+KP G
Sbjct:  152 IGFDNVRQVQCVSFIASKPTG 172          
BLAST of CX296506 vs. ExPASy Swiss-Prot
Match: RBS1_LEMGI (Ribulose bisphosphate carboxylase small chain SSU1, chloroplastic OS=Lemna gibba GN=SSU1 PE=2 SV=2)

HSP 1 Score: 215.698 bits (548), Expect = 1.603e-61
Identity = 101/156 (64.74%), Postives = 124/156 (79.49%), Query Frame = 1
Query:   52 MISSATVATANRASLAQASMVAPFTGLKSSSAFPATKKTNNDITSIASNGGRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEISYLIRSGWIPCLEFELEKGWVYREHHRSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRI 519
            M+S+A VA   R   AQ +MV  F G +SS AFPAT+K NND++++ S+GGRV CM+VWPP GLKKFETLSYLPPLS E L KE+ YL+R+ W+PC+EF  E G+VYRE++ SPGYYDGRYWTMWKLPM+GCTDA+QV+ EV E +K YP  FVRI
Sbjct:    2 MVSTAAVA---RVRPAQTNMVGAFNGCRSSVAFPATRKANNDLSTLPSSGGRVSCMQVWPPEGLKKFETLSYLPPLSVEDLAKEVDYLLRNDWVPCIEFSKE-GFVYRENNASPGYYDGRYWTMWKLPMFGCTDASQVIAEVEEAKKAYPEYFVRI 153          

HSP 2 Score: 40.4318 bits (93), Expect = 1.603e-61
Identity = 18/19 (94.74%), Postives = 18/19 (94.74%), Query Frame = 2
Query:  521 IGFDNKRQVQCISFIAAKP 577
            IGFDNKRQVQCISFIA KP
Sbjct:  154 IGFDNKRQVQCISFIAYKP 172          
BLAST of CX296506 vs. ExPASy Swiss-Prot
Match: RBS_HORVU (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Hordeum vulgare PE=2 SV=1)

HSP 1 Score: 205.682 bits (522), Expect = 3.232e-59
Identity = 93/141 (65.96%), Postives = 118/141 (83.69%), Query Frame = 1
Query:   97 AQASMVAPFTGLKSSSAFPATKKTNNDITSIASNGGRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEISYLIRSGWIPCLEFELEKGWVYREHHRSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRI 519
            + A+ VAPF GLKS++  P ++++N    S+ SNGGR++CM+VWP  G+KKFETLSYLPPLS EALLK++ YLIRS W+PCLEF  + G+++REH+ SPGYYDGRYWTMWKLPM+GCTDATQVL EV EV+KEYP ++VRI
Sbjct:    8 SSATSVAPFQGLKSTAGLPVSRRSNASSASV-SNGGRIRCMQVWPIEGIKKFETLSYLPPLSTEALLKQVDYLIRSKWVPCLEFS-KVGFIFREHNASPGYYDGRYWTMWKLPMFGCTDATQVLNEVEEVKKEYPDAYVRI 146          

HSP 2 Score: 42.743 bits (99), Expect = 3.232e-59
Identity = 18/21 (85.71%), Postives = 19/21 (90.48%), Query Frame = 2
Query:  521 IGFDNKRQVQCISFIAAKPPG 583
            IGFDN RQVQC+SFIA KPPG
Sbjct:  147 IGFDNMRQVQCVSFIAFKPPG 167          
BLAST of CX296506 vs. ExPASy Swiss-Prot
Match: RBS_ZANAE (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Zantedeschia aethiopica GN=RBCS PE=2 SV=1)

HSP 1 Score: 207.994 bits (528), Expect = 1.587e-58
Identity = 103/160 (64.38%), Postives = 124/160 (77.50%), Query Frame = 1
Query:   40 MASSMISSATVATANRASLAQASMVAPFTGLKSSSAFPATKKTNNDITSIASNGGRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEISYLIRSGWIPCLEFELEKGWVYREHHRSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRI 519
            MASSM+ S   A  +R S AQ++MV PF GL SS+AFP T+K   D + + SNG RV+CM+VWPP G KKFETLSYLPPL+ E L +E+ YLIR+GWIPC+EF  + G+VYRE+H SPGYYDGRYWTMWKLPM+GCTD++QVLKEV E  K YP  F RI
Sbjct:    1 MASSMMVST--AAVSRTSPAQSNMVVPFAGLHSSAAFPVTRKFA-DSSKLPSNGLRVRCMQVWPPEGKKKFETLSYLPPLTREQLGQEVDYLIRNGWIPCIEF-CKVGFVYREYHNSPGYYDGRYWTMWKLPMFGCTDSSQVLKEVDECSKAYPDYFNRI 156          

HSP 2 Score: 38.1206 bits (87), Expect = 1.587e-58
Identity = 16/24 (66.67%), Postives = 18/24 (75.00%), Query Frame = 2
Query:  512 SEFIGFDNKRQVQCISFIAAKPPG 583
            +  IGFDN RQVQCISF+  KP G
Sbjct:  154 NRIIGFDNTRQVQCISFLTYKPEG 177          
BLAST of CX296506 vs. ExPASy Swiss-Prot
Match: RBS2_WHEAT (Ribulose bisphosphate carboxylase small chain PW9, chloroplastic OS=Triticum aestivum PE=3 SV=1)

HSP 1 Score: 203.371 bits (516), Expect = 3.518e-58
Identity = 92/141 (65.25%), Postives = 116/141 (82.27%), Query Frame = 1
Query:   97 AQASMVAPFTGLKSSSAFPATKKTNNDITSIASNGGRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEISYLIRSGWIPCLEFELEKGWVYREHHRSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRI 519
            + A+ VAPF GLKS++  P + ++ +   S  SNGGR++CM+VWP  G+KKFETLSYLPPLS EALLK++ YLIRS W+PCLEF  + G+V+REH+ SPGYYDGRYWTMWKLPM+GCTDATQVL EV EV+KEYP ++VR+
Sbjct:    8 SSATTVAPFQGLKSTAGLPISCRSGSTGLSSVSNGGRIRCMQVWPIEGIKKFETLSYLPPLSTEALLKQVDYLIRSKWVPCLEFS-KVGFVFREHNSSPGYYDGRYWTMWKLPMFGCTDATQVLNEVEEVKKEYPDAYVRV 147          

HSP 2 Score: 41.5874 bits (96), Expect = 3.518e-58
Identity = 17/21 (80.95%), Postives = 19/21 (90.48%), Query Frame = 2
Query:  521 IGFDNKRQVQCISFIAAKPPG 583
            IGFDN RQVQC+SFIA +PPG
Sbjct:  148 IGFDNMRQVQCVSFIAFRPPG 168          
BLAST of CX296506 vs. ExPASy Swiss-Prot
Match: RBS1_WHEAT (Ribulose bisphosphate carboxylase small chain PWS4.3, chloroplastic OS=Triticum aestivum PE=3 SV=2)

HSP 1 Score: 202.601 bits (514), Expect = 7.797e-58
Identity = 91/141 (64.54%), Postives = 117/141 (82.98%), Query Frame = 1
Query:   97 AQASMVAPFTGLKSSSAFPATKKTNNDITSIASNGGRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEISYLIRSGWIPCLEFELEKGWVYREHHRSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRI 519
            + A+ VAPF GLKS++  P ++++   + S+ SNGGR++CM+VWP  G+KKFETLSYLPPLS EAL K++ YLIRS W+PCLEF  + G+V+REH+ SPGYYDGRYWTMWKLPM+GCTDATQVL EV EV+KEYP ++VR+
Sbjct:    8 SSATTVAPFQGLKSTAGLPVSRRSRGSLGSV-SNGGRIRCMQVWPIEGIKKFETLSYLPPLSTEALSKQVDYLIRSKWVPCLEFS-KVGFVFREHNSSPGYYDGRYWTMWKLPMFGCTDATQVLNEVEEVKKEYPDAYVRV 146          

HSP 2 Score: 41.2022 bits (95), Expect = 7.797e-58
Identity = 17/21 (80.95%), Postives = 19/21 (90.48%), Query Frame = 2
Query:  521 IGFDNKRQVQCISFIAAKPPG 583
            IGFDN RQVQC+SFIA +PPG
Sbjct:  147 IGFDNLRQVQCVSFIAFRPPG 167          
BLAST of CX296506 vs. ExPASy Swiss-Prot
Match: RBS1_ORYSJ (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Oryza sativa subsp. japonica GN=RBCS PE=1 SV=1)

HSP 1 Score: 203.756 bits (517), Expect = 1.728e-57
Identity = 92/141 (65.25%), Postives = 114/141 (80.85%), Query Frame = 1
Query:   97 AQASMVAPFTGLKSSSAFPATKKTNNDITSIASNGGRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEISYLIRSGWIPCLEFELEKGWVYREHHRSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRI 519
            + A+ VAPF GLKS++  P  +++ N      SNGGR++CM+VWP  G+KKFETLSYLPPL+ E LLK+I YL+RS W+PCLEF  + G+VYRE+HRSPGYYDGRYWTMWKLPM+GCTDATQVLKE+ E +K YP +FVRI
Sbjct:    8 SSATTVAPFQGLKSTAGMPVARRSGNSSFGNVSNGGRIRCMQVWPIEGIKKFETLSYLPPLTVEDLLKQIEYLLRSKWVPCLEFS-KVGFVYRENHRSPGYYDGRYWTMWKLPMFGCTDATQVLKELEEAKKAYPDAFVRI 147          

HSP 2 Score: 38.891 bits (89), Expect = 1.728e-57
Identity = 18/21 (85.71%), Postives = 18/21 (85.71%), Query Frame = 2
Query:  521 IGFDNKRQVQCISFIAAKPPG 583
            IGFDN RQVQ ISFIA KPPG
Sbjct:  148 IGFDNVRQVQLISFIAYKPPG 168          
BLAST of CX296506 vs. ExPASy Swiss-Prot
Match: RBS1_ORYSI (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Oryza sativa subsp. indica GN=RBCS PE=2 SV=2)

HSP 1 Score: 203.756 bits (517), Expect = 1.728e-57
Identity = 92/141 (65.25%), Postives = 114/141 (80.85%), Query Frame = 1
Query:   97 AQASMVAPFTGLKSSSAFPATKKTNNDITSIASNGGRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEISYLIRSGWIPCLEFELEKGWVYREHHRSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRI 519
            + A+ VAPF GLKS++  P  +++ N      SNGGR++CM+VWP  G+KKFETLSYLPPL+ E LLK+I YL+RS W+PCLEF  + G+VYRE+HRSPGYYDGRYWTMWKLPM+GCTDATQVLKE+ E +K YP +FVRI
Sbjct:    8 SSATTVAPFQGLKSTAGMPVARRSGNSSFGNVSNGGRIRCMQVWPIEGIKKFETLSYLPPLTVEDLLKQIEYLLRSKWVPCLEFS-KVGFVYRENHRSPGYYDGRYWTMWKLPMFGCTDATQVLKELEEAKKAYPDAFVRI 147          

HSP 2 Score: 38.891 bits (89), Expect = 1.728e-57
Identity = 18/21 (85.71%), Postives = 18/21 (85.71%), Query Frame = 2
Query:  521 IGFDNKRQVQCISFIAAKPPG 583
            IGFDN RQVQ ISFIA KPPG
Sbjct:  148 IGFDNVRQVQLISFIAYKPPG 168          
BLAST of CX296506 vs. ExPASy Swiss-Prot
Match: RBS2_ORYSJ (Ribulose bisphosphate carboxylase small chain A, chloroplastic OS=Oryza sativa subsp. japonica GN=RBCS-A PE=2 SV=2)

HSP 1 Score: 203.371 bits (516), Expect = 2.253e-57
Identity = 92/141 (65.25%), Postives = 115/141 (81.56%), Query Frame = 1
Query:   97 AQASMVAPFTGLKSSSAFPATKKTNNDITSIASNGGRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEISYLIRSGWIPCLEFELEKGWVYREHHRSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRI 519
            + A+ VAPF GLKS++  P ++++ N      SNGGR++CM+VWP  G+KKFETLSYLPPL+ E LLK+I YL+RS W+PCLEF  + G+VYRE+HRSPGYYDGRYWTMWKLPM+GCTDATQVLKE+ E +K YP +FVRI
Sbjct:    8 SSATSVAPFQGLKSTAGLPVSRRSTNSGFGNVSNGGRIKCMQVWPIEGIKKFETLSYLPPLTVEDLLKQIEYLLRSKWVPCLEFS-KVGFVYRENHRSPGYYDGRYWTMWKLPMFGCTDATQVLKELEEAKKAYPDAFVRI 147          

HSP 2 Score: 38.891 bits (89), Expect = 2.253e-57
Identity = 18/21 (85.71%), Postives = 18/21 (85.71%), Query Frame = 2
Query:  521 IGFDNKRQVQCISFIAAKPPG 583
            IGFDN RQVQ ISFIA KPPG
Sbjct:  148 IGFDNVRQVQLISFIAYKPPG 168          
The following BLAST results are available for this feature:
BLAST of CX296506 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 120
Match NameE-valueIdentityDescription
RBS6_FLAPR1.128e-6267.35Ribulose bisphosphate carboxylase small chain 6, c... [more]
RBS_FLATR1.229e-6165.31Ribulose bisphosphate carboxylase small chain, chl... [more]
RBS1_LEMGI1.603e-6164.74Ribulose bisphosphate carboxylase small chain SSU1... [more]
RBS_HORVU3.232e-5965.96Ribulose bisphosphate carboxylase small chain, chl... [more]
RBS_ZANAE1.587e-5864.38Ribulose bisphosphate carboxylase small chain, chl... [more]
RBS2_WHEAT3.518e-5865.25Ribulose bisphosphate carboxylase small chain PW9,... [more]
RBS1_WHEAT7.797e-5864.54Ribulose bisphosphate carboxylase small chain PWS4... [more]
RBS1_ORYSJ1.728e-5765.25Ribulose bisphosphate carboxylase small chain, chl... [more]
RBS1_ORYSI1.728e-5765.25Ribulose bisphosphate carboxylase small chain, chl... [more]
RBS2_ORYSJ2.253e-5765.25Ribulose bisphosphate carboxylase small chain A, c... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC05142A05SK FerrChloL1 Citrus clementina cDNA clone C05142A05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX296506 ID=CX296506; Name=CX296506; organism=Citrus clementina; type=EST; length=709bp
GAGGCCTCGTGCCGAATTCGGCACGAGGAGCAAGTACCAATGGCTTCCTC
AATGATCTCATCGGCCACCGTTGCCACCGCGAACCGCGCCAGCCTTGCTC
AGGCCAGCATGGTCGCCCCCTTCACCGGCCTCAAGTCTTCTTCTGCTTTC
CCAGCAACCAAGAAGACCAACAATGACATTACTTCCATTGCAAGCAACGG
CGGAAGAGTCCAATGCATGAAGGTGTGGCCACCAACTGGCTTGAAGAAGT
TCGAGACTCTCTCATACCTCCCGCCACTGTCCGATGAAGCTTTGCTCAAG
GAAATCAGTTACCTTATCCGCTCCGGCTGGATTCCCTGCTTGGAATTCGA
GTTGGAGAAAGGATGGGTGTACCGTGAGCACCACAGGTCACCAGGATACT
ACGATGGACGCTACTGGACAATGTGGAAGCTGCCCATGTATGGGTGCACA
GATGCAACCCAGGTTTTGAAGGAGGTTGGGGAGGTCCAGAAGGAATACCC
ACATTCATTCGTCCGAATTTATCGGATTTGACAACAAGCGTCAAGTGCAG
TGCATCAGTTTCATTGCTGCCAAGCCACCAGGCGTCTAGGTTCCCAATTA
AATTTGTGTAACCACCCATGCAATATTGTTGATTATTATTATGTGTAACC
CCCATAATGATCATTCGATCAATGGGGGTTCGGTTTGCGTTTAATTTGTA
CTTAGGCTG
back to top